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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular amino acid catabolic process
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Accession:GO:0009063 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid catabolic process;   cellular amino acid breakdown;   cellular amino acid catabolism;   cellular amino acid degradation


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cellular amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENOSF1 enolase superfamily member 1 IEA InterPro GO_REF:0000002 NCBI chr 7:67,498,425...67,527,534
Ensembl chr 7:67,498,432...67,527,490
JBrowse link
G IL4I1 interleukin 4 induced 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:106,636,282...106,673,438
Ensembl chr 1:106,657,477...106,673,422
JBrowse link
4-hydroxyproline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 IEA Ensembl GO_REF:0000107 NCBI chr28:10,849,037...10,872,238
Ensembl chr28:10,849,046...10,871,853
JBrowse link
arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDAH1 dimethylarginine dimethylaminohydrolase 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 6:62,548,852...62,683,687
Ensembl chr 6:62,549,152...62,683,729
JBrowse link
G DDAH2 dimethylarginine dimethylaminohydrolase 2 IEA InterPro GO_REF:0000002 NCBI chr12:1,206,180...1,209,459
Ensembl chr12:1,206,309...1,208,389
JBrowse link
G FAH fumarylacetoacetate hydrolase IEA Ensembl GO_REF:0000107 NCBI chr 3:57,300,422...57,326,546
Ensembl chr 3:57,300,441...57,326,486
JBrowse link
G NOS1 nitric oxide synthase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:13,787,341...13,895,176
Ensembl chr26:13,786,309...13,962,332
JBrowse link
G NOS2 nitric oxide synthase 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:42,171,821...42,210,217
Ensembl chr 9:42,171,821...42,208,588
JBrowse link
G NOS3 nitric oxide synthase 3 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr16:15,054,196...15,072,454
Ensembl chr16:15,011,344...15,072,277
JBrowse link
arginine catabolic process to glutamate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OAT ornithine aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:33,763,661...33,788,817
Ensembl chr28:33,758,473...33,788,759
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:242,717...255,736
Ensembl chr12:242,714...255,305
JBrowse link
G ARG2 arginase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:41,588,051...41,619,406
Ensembl chr 8:41,588,150...41,619,402
JBrowse link
arginine catabolic process to proline via ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OAT ornithine aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:33,763,661...33,788,817
Ensembl chr28:33,758,473...33,788,759
JBrowse link
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:54,215,920...54,238,094
Ensembl chr18:54,216,926...54,238,059
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase ISO (PMID:9163533) UniProtKB PMID:9163533 NCBI chr12:67,080,646...67,104,429
Ensembl chr12:67,081,329...67,104,397
JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr28:12,352,658...12,377,960
Ensembl chr28:12,352,659...12,414,579
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:57,968,833...57,994,219
Ensembl chr 2:57,968,833...57,994,218
JBrowse link
beta-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO RGD PMID:2768248 RGD:1599052 NCBI chr 8:47,280,872...47,304,460
Ensembl chr 8:47,282,235...47,304,283
JBrowse link
branched-chain amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAT1 branched chain amino acid transaminase 1 ISO (MGI:MGI:3027291|PMID:14755340) MGI PMID:14755340 MGI:MGI:3027291 NCBI chr27:22,536,297...22,643,350
Ensembl chr27:22,535,254...22,636,959
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 ISO (MGI:MGI:3027291|PMID:14755340) RGD
MGI
PMID:11733007, PMID:14755340 MGI:MGI:3027291, RGD:1582175 NCBI chr 1:107,539,125...107,549,286
Ensembl chr 1:107,538,465...107,549,234
JBrowse link
G BCKDHA branched chain keto acid dehydrogenase E1 subunit alpha IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 1:112,579,345...112,599,163 JBrowse link
G BCKDHB branched chain keto acid dehydrogenase E1 subunit beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:41,009,798...41,224,802
Ensembl chr12:41,009,730...41,224,802
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO PMID:1377677 HGNC PMID:1377677 RGD:68712 NCBI chr 6:17,128,615...17,132,925
Ensembl chr 6:17,128,824...17,133,585
JBrowse link
G IVD isovaleryl-CoA dehydrogenase ISO (PMID:7640268) UniProt PMID:7640268 NCBI chr30:7,584,122...7,594,599
Ensembl chr30:7,584,086...7,594,150
JBrowse link
G SLC25A44 solute carrier family 25 member 44 ISO (PMID:31435015)
(MGI:MGI:6359503|PMID:31435015)
UniProt PMID:31435015 MGI:MGI:6359503 NCBI chr 7:41,630,868...41,665,894
Ensembl chr 7:41,630,098...41,665,791
JBrowse link
G TMEM91 transmembrane protein 91 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 1:112,610,660...112,615,813 JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:18,032,663...18,057,277
Ensembl chr26:18,033,392...18,057,238
JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:18,032,663...18,057,277
Ensembl chr26:18,033,392...18,057,238
JBrowse link
G DDO D-aspartate oxidase IEA Ensembl GO_REF:0000107 NCBI chr12:67,080,646...67,104,429
Ensembl chr12:67,081,329...67,104,397
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:18,032,663...18,057,277
Ensembl chr26:18,033,392...18,057,238
JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:33,385,779...33,471,348
Ensembl chr 6:33,376,996...33,471,326
JBrowse link
G ALDH5A1 aldehyde dehydrogenase 5 family member A1 IEA UniProt GO_REF:0000041 NCBI chr35:22,560,005...22,590,996
Ensembl chr35:22,560,008...22,587,875
JBrowse link
glutamate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLUD1 glutamate dehydrogenase 1 ISO (PMID:11032875), (PMID:6121377) UniProtKB PMID:6121377, PMID:11032875 NCBI chr 4:34,629,046...34,662,711 JBrowse link
G LOC483859 glutamate dehydrogenase 1 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:21,387,335...21,388,831 JBrowse link
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr28:12,352,658...12,377,960
Ensembl chr28:12,352,659...12,414,579
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 ISO (MGI:MGI:53641|PMID:4193185) MGI
RGD
PMID:4193185, PMID:16489927 MGI:MGI:53641, RGD:13504861 NCBI chr 2:57,968,833...57,994,219
Ensembl chr 2:57,968,833...57,994,218
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr28:12,352,658...12,377,960
Ensembl chr28:12,352,659...12,414,579
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 ISO (MGI:MGI:53641|PMID:4193185) MGI PMID:4193185 MGI:MGI:53641 NCBI chr 2:57,968,833...57,994,219
Ensembl chr 2:57,968,833...57,994,218
JBrowse link
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADHFE1 alcohol dehydrogenase iron containing 1 ISO (PMID:16435184) UniProtKB PMID:16435184 NCBI chr29:16,019,183...16,054,060
Ensembl chr29:16,019,246...16,050,535
JBrowse link
glutamate decarboxylation to succinate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAD2 glutamate decarboxylase 2 ISO RGD PMID:8999827 RGD:1625237 NCBI chr 2:7,365,708...7,450,893
Ensembl chr 2:7,365,283...7,450,893
JBrowse link
glutamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLS glutaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr37:1,433,640...1,508,347
Ensembl chr37:1,433,398...1,508,146
JBrowse link
G GLS2 glutaminase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:722,105...737,857
Ensembl chr10:722,202...737,753
JBrowse link
G PPAT phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:8463258 RGD:633710 NCBI chr13:48,618,460...48,656,164
Ensembl chr13:48,620,714...48,655,780
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase IEA InterPro GO_REF:0000002 NCBI chr20:39,815,449...39,820,907
Ensembl chr20:39,815,814...39,820,506
JBrowse link
G GLDC glycine decarboxylase IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr11:27,491,639...27,584,450
Ensembl chr11:27,414,834...27,584,450
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr20:39,815,449...39,820,907
Ensembl chr20:39,815,814...39,820,506
JBrowse link
G GCSH glycine cleavage system protein H IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr 5:70,745,591...70,757,292
Ensembl chr 5:70,745,258...70,756,830
JBrowse link
G GLDC glycine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:27,491,639...27,584,450
Ensembl chr11:27,414,834...27,584,450
JBrowse link
histidine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:35,741,190...35,761,848
Ensembl chr15:35,692,161...35,760,978
JBrowse link
G HAL histidine ammonia-lyase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:35,767,314...35,791,086
Ensembl chr15:35,759,672...35,791,003
JBrowse link
G HDC histidine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:16,201,222...16,223,452
Ensembl chr30:16,201,589...16,223,662
JBrowse link
G UROC1 urocanate hydratase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:676,624...717,109
Ensembl chr20:678,073...717,141
JBrowse link
histidine catabolic process to glutamate and formamide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProt GO_REF:0000041 NCBI chr15:35,741,190...35,761,848
Ensembl chr15:35,692,161...35,760,978
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProt GO_REF:0000041 NCBI chr31:39,451,557...39,464,249
Ensembl chr31:39,275,159...39,464,715
JBrowse link
G HAL histidine ammonia-lyase IEA UniProtKB GO_REF:0000041 NCBI chr15:35,767,314...35,791,086
Ensembl chr15:35,759,672...35,791,003
JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProt GO_REF:0000041 NCBI chr20:676,624...717,109
Ensembl chr20:678,073...717,141
JBrowse link
histidine catabolic process to glutamate and formate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProt GO_REF:0000041 NCBI chr15:35,741,190...35,761,848
Ensembl chr15:35,692,161...35,760,978
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProt GO_REF:0000041 NCBI chr31:39,451,557...39,464,249
Ensembl chr31:39,275,159...39,464,715
JBrowse link
G HAL histidine ammonia-lyase IEA UniProtKB GO_REF:0000041 NCBI chr15:35,767,314...35,791,086
Ensembl chr15:35,759,672...35,791,003
JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProt GO_REF:0000041 NCBI chr20:676,624...717,109
Ensembl chr20:678,073...717,141
JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLMH bleomycin hydrolase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:44,271,662...44,319,814
Ensembl chr 9:44,272,385...44,319,769
JBrowse link
G CBS cystathionine beta-synthase ISO (PMID:18776696), (PMID:24416422) UniProtKB PMID:18776696, PMID:24416422 NCBI chr31:37,230,900...37,247,170 JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase IEA Ensembl GO_REF:0000107 NCBI chr34:6,068,572...6,119,580
Ensembl chr34:6,070,046...6,098,312
JBrowse link
isoleucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADSB acyl-CoA dehydrogenase short/branched chain ISO (PMID:11013134) UniProt PMID:11013134 NCBI chr28:32,563,697...32,604,006
Ensembl chr28:32,563,671...32,601,063
JBrowse link
G ACAT1 acetyl-CoA acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:24,361,301...24,379,807
Ensembl chr 5:24,361,301...24,379,812
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:107,539,125...107,549,286
Ensembl chr 1:107,538,465...107,549,234
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr 6:17,128,615...17,132,925
Ensembl chr 6:17,128,824...17,133,585
JBrowse link
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 ISO (PMID:18996107), (PMID:19706438) UniProt PMID:18996107, PMID:19706438 NCBI chr  X:45,165,272...45,167,683
Ensembl chr  X:45,165,272...45,167,574
JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100855679 serine--pyruvate aminotransferase, mitochondrial IEA Ensembl GO_REF:0000107 NCBI chr25:50,968,291...50,976,089 JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT2 alanine--glyoxylate aminotransferase 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 4:73,292,117...73,327,769
Ensembl chr 4:73,292,101...73,327,962
JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase ISO (PMID:15520012) UniProtKB PMID:15520012 NCBI chr31:37,230,900...37,247,170 JBrowse link
G CDO1 cysteine dioxygenase type 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:5,512,996...5,524,556
Ensembl chr11:5,371,378...5,524,562
JBrowse link
G LOC100855679 serine--pyruvate aminotransferase, mitochondrial IEA Ensembl GO_REF:0000107 NCBI chr25:50,968,291...50,976,089 JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr27:2,005,482...2,036,703
Ensembl chr27:2,005,355...2,036,228
JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr27:2,005,482...2,036,703
Ensembl chr27:2,005,355...2,036,228
JBrowse link
L-kynurenine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase IEA UniProtKB GO_REF:0000041 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase ISO (MGI:MGI:1350812|PMID:10567240) MGI PMID:10567240 MGI:MGI:1350812 NCBI chr14:59,950,123...59,993,457
Ensembl chr14:59,951,216...60,000,212
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIPOX pipecolic acid and sarcosine oxidase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:43,200,343...43,212,288
Ensembl chr 9:43,200,371...43,212,288
JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase IEA UniProt GO_REF:0000041 NCBI chr14:59,950,123...59,993,457
Ensembl chr14:59,951,216...60,000,212
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase IEA UniProt GO_REF:0000041 NCBI chr 8:48,003,730...48,025,001
Ensembl chr 8:48,002,211...48,024,999
JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAH fumarylacetoacetate hydrolase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr 3:57,300,422...57,326,546
Ensembl chr 3:57,300,441...57,326,486
JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 8:50,133,496...50,143,487
Ensembl chr 8:50,133,714...50,143,439
JBrowse link
G HGD homogentisate 1,2-dioxygenase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr33:24,066,099...24,107,827
Ensembl chr33:24,066,306...24,151,354
JBrowse link
G PAH phenylalanine hydroxylase IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000041 NCBI chr15:41,590,253...41,670,156
Ensembl chr15:41,592,876...41,670,837
JBrowse link
G QDPR quinoid dihydropteridine reductase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:62,970,850...62,987,512
Ensembl chr 3:62,970,121...63,028,395
JBrowse link
G RABL3 RAB, member of RAS oncogene family like 3 IEA UniProt GO_REF:0000041 NCBI chr33:24,107,754...24,151,378
Ensembl chr33:24,066,306...24,151,354
JBrowse link
G TAT tyrosine aminotransferase IEA UniProt GO_REF:0000041 NCBI chr 5:77,365,589...77,378,474
Ensembl chr 5:77,366,138...77,378,419
JBrowse link
L-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase ISO (PMID:18776696) UniProtKB PMID:18776696 NCBI chr31:37,230,900...37,247,170 JBrowse link
G SDS serine dehydratase ISO (PMID:15689518), (PMID:18342636) UniProtKB PMID:15689518, PMID:18342636 NCBI chr26:10,725,123...10,728,087 JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:1,357,347...1,362,511
Ensembl chr10:1,356,706...1,362,305
JBrowse link
leucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr 6:17,128,615...17,132,925
Ensembl chr 6:17,128,824...17,133,585
JBrowse link
G HMGCL 3-hydroxy-3-methylglutaryl-CoA lyase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:75,688,736...75,703,095
Ensembl chr 2:75,688,827...75,702,965
JBrowse link
G HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:22,748,798...22,953,849
Ensembl chr12:22,701,085...22,954,133
JBrowse link
G IVD isovaleryl-CoA dehydrogenase IEA UniProt GO_REF:0000041 NCBI chr30:7,584,122...7,594,599
Ensembl chr30:7,584,086...7,594,150
JBrowse link
G MCCC2 methylcrotonoyl-CoA carboxylase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:54,751,703...54,825,133
Ensembl chr 2:54,751,698...54,823,273
JBrowse link
methionine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A IEA Ensembl GO_REF:0000107 NCBI chr 4:29,450,857...29,467,251
Ensembl chr 4:29,452,601...29,466,929
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IEA Ensembl GO_REF:0000107 NCBI chr38:321,246...420,262
Ensembl chr38:366,656...416,952
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine carbamoyltransferase IEA Ensembl GO_REF:0000107 NCBI chr  X:33,130,921...33,200,441
Ensembl chr  X:33,131,040...33,199,595
JBrowse link
prenylcysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRPEL2 GrpE like 2, mitochondrial IEA InterPro GO_REF:0000002 NCBI chr 4:59,603,384...59,614,491
Ensembl chr 4:59,590,167...59,614,584
JBrowse link
G PCYOX1 prenylcysteine oxidase 1 IEA UniProt GO_REF:0000104 NCBI chr10:68,806,611...68,825,941
Ensembl chr10:68,806,572...68,823,291
JBrowse link
G PCYOX1L prenylcysteine oxidase 1 like IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000104 NCBI chr 4:59,589,846...59,600,725
Ensembl chr 4:59,590,167...59,614,584
JBrowse link
proline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:18,032,663...18,057,277
Ensembl chr26:18,033,392...18,057,238
JBrowse link
G LOC477562 proline dehydrogenase 1, mitochondrial IEA InterPro GO_REF:0000002 NCBI chr26:29,039,007...29,059,722 JBrowse link
G PRODH2 proline dehydrogenase 2 IEA InterPro GO_REF:0000002 NCBI chr 1:116,831,722...116,842,698
Ensembl chr 1:116,831,722...116,916,278
JBrowse link
proline catabolic process to glutamate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH4A1 aldehyde dehydrogenase 4 family member A1 IEA UniProt GO_REF:0000041 NCBI chr 2:79,688,078...79,712,340
Ensembl chr 2:79,688,086...79,710,540
JBrowse link
G LOC477562 proline dehydrogenase 1, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:29,039,007...29,059,722 JBrowse link
G PRODH2 proline dehydrogenase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:116,831,722...116,842,698
Ensembl chr 1:116,831,722...116,916,278
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO (MGI:MGI:2183618|PMID:12023972) RGD
MGI
PMID:11741948, PMID:12023972 MGI:MGI:2183618, RGD:730275 NCBI chr24:23,410,553...23,423,494
Ensembl chr24:23,411,140...23,419,767
JBrowse link
sarcosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SARDH sarcosine dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:50,030,397...50,093,556
Ensembl chr 9:50,030,707...50,091,553
JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCLY selenocysteine lyase ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr25:48,574,648...48,608,367
Ensembl chr25:48,574,130...48,632,035
JBrowse link
serine family amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THNSL2 threonine synthase like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:38,196,605...38,212,624
Ensembl chr17:38,191,494...38,212,809
JBrowse link
threonine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase IEA InterPro GO_REF:0000002 NCBI chr10:26,821,121...26,827,496
Ensembl chr10:26,821,027...26,827,707
JBrowse link
G LOC477365 L-threonine 3-dehydrogenase, mitochondrial IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr25:26,541,717...26,560,366 JBrowse link
G LOC491550 probable low-specificity L-threonine aldolase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:2,909,869...2,917,921 JBrowse link
G SDSL serine dehydratase like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:10,731,972...10,759,768
Ensembl chr26:10,743,947...10,759,777
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chr19:37,658,999...37,725,426
Ensembl chr19:37,659,226...37,725,172
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProtKB GO_REF:0000104 NCBI chr 7:32,941,487...32,994,541
Ensembl chr 7:32,941,487...32,994,541
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BIRC5 baculoviral IAP repeat containing 5 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 9:2,930,308...2,959,307 JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr16:25,391,759...25,407,161
Ensembl chr16:25,391,754...25,407,048
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr16:25,319,035...25,375,085
Ensembl chr16:25,319,035...25,385,515
JBrowse link
G KYNU kynureninase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:45,022,450...45,150,977
Ensembl chr19:45,022,072...45,149,339
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IEA UniProtKB GO_REF:0000041 NCBI chr15:53,406,110...53,424,260
Ensembl chr15:53,405,957...53,423,958
JBrowse link
tyrosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAH fumarylacetoacetate hydrolase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:57,300,422...57,326,546
Ensembl chr 3:57,300,441...57,326,486
JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 IEA UniProt GO_REF:0000043 NCBI chr 8:50,133,496...50,143,487
Ensembl chr 8:50,133,714...50,143,439
JBrowse link
G HPD 4-hydroxyphenylpyruvate dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:7,430,891...7,440,643
Ensembl chr26:7,430,933...7,440,611
JBrowse link
G TAT tyrosine aminotransferase IEA Ensembl GO_REF:0000107 NCBI chr 5:77,365,589...77,378,474
Ensembl chr 5:77,366,138...77,378,419
JBrowse link
valine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:47,280,872...47,304,460
Ensembl chr 8:47,282,235...47,304,283
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr 6:17,128,615...17,132,925
Ensembl chr 6:17,128,824...17,133,585
JBrowse link
G ECHDC1 ethylmalonyl-CoA decarboxylase 1 IEA UniProt GO_REF:0000041 NCBI chr 1:66,012,245...66,073,008
Ensembl chr 1:66,012,782...66,073,000
JBrowse link
G HIBADH 3-hydroxyisobutyrate dehydrogenase IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr14:40,672,294...40,780,608
Ensembl chr14:40,673,008...40,780,516
JBrowse link
G HIBCH 3-hydroxyisobutyryl-CoA hydrolase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr37:841,385...943,972
Ensembl chr37:841,414...943,941
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      primary metabolic process 9470
        cellular amino acid metabolic process 265
          cellular amino acid catabolic process 96
            alpha-amino acid catabolic process + 84
            amino acid catabolic process via Ehrlich pathway + 0
            anaerobic amino acid catabolic process + 0
            aromatic amino acid family catabolic process + 20
            beta-alanine catabolic process + 1
            branched-chain amino acid catabolic process + 18
            fructoselysine catabolic process 0
            gamma-aminobutyric acid catabolic process + 2
            sulfur amino acid catabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      small molecule metabolic process 1678
        organic acid metabolic process 950
          oxoacid metabolic process 927
            carboxylic acid metabolic process 877
              cellular amino acid metabolic process 265
                cellular amino acid catabolic process 96
                  alpha-amino acid catabolic process + 84
                  amino acid catabolic process via Ehrlich pathway + 0
                  anaerobic amino acid catabolic process + 0
                  aromatic amino acid family catabolic process + 20
                  beta-alanine catabolic process + 1
                  branched-chain amino acid catabolic process + 18
                  fructoselysine catabolic process 0
                  gamma-aminobutyric acid catabolic process + 2
                  sulfur amino acid catabolic process + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.