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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular amino acid catabolic process
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Accession:GO:0009063 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid catabolic process;   cellular amino acid breakdown;   cellular amino acid catabolism;   cellular amino acid degradation


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4-hydroxyproline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 ISO (PMID:21998747) BHF-UCL PMID:21998747 NCBI chrNW_004955507:3,687,449...3,711,939
Ensembl chrNW_004955507:3,687,769...3,711,151
JBrowse link
arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddah1 dimethylarginine dimethylaminohydrolase 1 ISO (PMID:24895913) BHF-UCL PMID:24895913 NCBI chrNW_004955423:8,637,116...8,673,881
Ensembl chrNW_004955423:8,636,756...8,676,790
JBrowse link
G Fah fumarylacetoacetate hydrolase ISO (MGI:MGI:1929783|PMID:11209059) MGI PMID:11209059 MGI:MGI:1929783 NCBI chrNW_004955533:904,294...921,730
Ensembl chrNW_004955533:904,295...921,730
JBrowse link
G Nos1 nitric oxide synthase 1 ISO PMID:1383204 BHF-UCL PMID:1383204 RGD:8553334 NCBI chrNW_004955455:13,797,557...13,978,402
Ensembl chrNW_004955455:13,797,545...13,972,566
JBrowse link
G Nos2 nitric oxide synthase 2 ISO (PMID:7504305)
(MGI:MGI:3807772|PMID:1383204)
BHF-UCL PMID:1383204, PMID:7504305 MGI:MGI:3807772 NCBI chrNW_004955481:5,197,957...5,232,406
Ensembl chrNW_004955481:5,201,234...5,231,961
JBrowse link
G Nos3 nitric oxide synthase 3 ISO (PMID:1378832), (PMID:7488039) BHF-UCL PMID:1378832, PMID:7488039 NCBI chrNW_004955491:5,438,228...5,457,308
Ensembl chrNW_004955491:5,438,010...5,460,814
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arg1 arginase 1 ISO RGD PMID:15753084 RGD:8693655 NCBI chrNW_004955436:12,235,767...12,247,817
Ensembl chrNW_004955436:12,235,767...12,251,972
JBrowse link
G Arg2 arginase 2 ISO RGD PMID:15753084 RGD:8693655 NCBI chrNW_004955466:2,549,557...2,577,060
Ensembl chrNW_004955466:2,549,557...2,577,060
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase ISO (PMID:9163533) UniProtKB PMID:9163533 NCBI chrNW_004955411:35,142,415...35,163,234
Ensembl chrNW_004955411:35,143,735...35,163,276
JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 ISO (PMID:2241899) UniProtKB PMID:2241899 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO (PMID:2567216) UniProtKB PMID:2567216 NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113
JBrowse link
beta-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 ISO RGD PMID:2768248 RGD:1599052 NCBI chrNW_004955523:1,343,545...1,369,080
Ensembl chrNW_004955523:1,343,545...1,369,073
JBrowse link
branched-chain amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 ISO (MGI:MGI:3027291|PMID:14755340) MGI PMID:14755340 MGI:MGI:3027291 NCBI chrNW_004955413:19,975,395...20,087,656
Ensembl chrNW_004955413:19,981,328...20,087,638
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 ISO (MGI:MGI:3027291|PMID:14755340) RGD
MGI
PMID:11733007, PMID:14755340 MGI:MGI:3027291, RGD:1582175 NCBI chrNW_004955559:1,785,253...1,796,838
Ensembl chrNW_004955559:1,785,253...1,797,899
JBrowse link
G Bckdha branched chain keto acid dehydrogenase E1 subunit alpha ISO (PMID:7883996) HGNC PMID:7883996 NCBI chrNW_004955555:334,253...357,417 JBrowse link
G Bckdhb branched chain keto acid dehydrogenase E1 subunit beta ISO (PMID:2022752) HGNC PMID:2022752 NCBI chrNW_004955411:8,427,875...8,626,564
Ensembl chrNW_004955411:8,437,548...8,628,363
JBrowse link
G Bckdk branched chain keto acid dehydrogenase kinase ISO PMID:1377677 HGNC PMID:1377677 RGD:68712 NCBI chrNW_004955493:7,940,358...7,946,317
Ensembl chrNW_004955493:7,940,315...7,946,317
JBrowse link
G Ivd isovaleryl-CoA dehydrogenase ISO (PMID:7640268) UniProt PMID:7640268 NCBI chrNW_004955416:7,327,557...7,341,533
Ensembl chrNW_004955416:7,327,557...7,346,027
JBrowse link
G Slc25a44 solute carrier family 25 member 44 ISO (MGI:MGI:6359503|PMID:31435015)
(PMID:31435015)
UniProt PMID:31435015 MGI:MGI:6359503 NCBI chrNW_004955545:2,347,951...2,364,935
Ensembl chrNW_004955545:2,347,844...2,364,935
JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase ISO (MGI:MGI:5442503|PMID:20603179)
(PMID:16616139), (PMID:20603179)
UniProtKB PMID:16616139, PMID:20603179 MGI:MGI:5442503 NCBI chrNW_004955455:10,095,597...10,127,244
Ensembl chrNW_004955455:10,095,300...10,127,666
JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase ISO (MGI:MGI:5442503|PMID:20603179)
(PMID:20603179)
UniProtKB PMID:20603179 MGI:MGI:5442503 NCBI chrNW_004955411:35,142,415...35,163,234
Ensembl chrNW_004955411:35,143,735...35,163,276
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase ISO (PMID:18544534) UniProtKB PMID:18544534 NCBI chrNW_004955455:10,095,597...10,127,244
Ensembl chrNW_004955455:10,095,300...10,127,666
JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase ISO (PMID:11561735) UniProt PMID:11561735 NCBI chrNW_004955442:9,422,849...9,516,054
Ensembl chrNW_004955442:9,422,849...9,516,103
JBrowse link
G Aldh5a1 aldehyde dehydrogenase 5 family member A1 ISO (PMID:9683595)
(MGI:MGI:2151301|PMID:11544478), (MGI:MGI:3050939|PMID:15262267)
(PMID:15037717)
UniProtKB
MGI
PMID:9683595, PMID:11544478, PMID:15037717, PMID:15262267 MGI:MGI:2151301, MGI:MGI:3050939 NCBI chrNW_004955483:2,467,425...2,494,416
Ensembl chrNW_004955483:2,467,425...2,494,416
JBrowse link
glutamate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glud1 glutamate dehydrogenase 1 ISO (PMID:11032875), (PMID:6121377) UniProtKB PMID:6121377, PMID:11032875 NCBI chrNW_004955510:5,987,811...6,021,001 JBrowse link
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 ISO (MGI:MGI:53641|PMID:4193185) RGD
MGI
PMID:4193185, PMID:16489927 MGI:MGI:53641, RGD:13504861 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO (MGI:MGI:53641|PMID:4193185) MGI
RGD
PMID:4193185, PMID:16489927 MGI:MGI:53641, RGD:13504861 NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 ISO (MGI:MGI:53641|PMID:4193185) MGI PMID:4193185 MGI:MGI:53641 NCBI chrNW_004955507:5,346,937...5,370,072
Ensembl chrNW_004955507:5,346,838...5,370,072
JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 ISO (MGI:MGI:53641|PMID:4193185) MGI PMID:4193185 MGI:MGI:53641 NCBI chrNW_004955433:16,121,795...16,145,129
Ensembl chrNW_004955433:16,122,824...16,145,113
JBrowse link
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adhfe1 alcohol dehydrogenase iron containing 1 ISO (PMID:16435184) UniProtKB PMID:16435184 NCBI chrNW_004955444:12,706,404...12,745,106 JBrowse link
glutamate decarboxylation to succinate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gad2 glutamate decarboxylase 2 ISO RGD PMID:8999827 RGD:1625237 NCBI chrNW_004955429:3,092,977...3,170,128
Ensembl chrNW_004955429:3,096,453...3,169,259
JBrowse link
glutamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase ISO (PMID:22049910)
(MGI:MGI:3623875|PMID:16641247)
(MGI:MGI:5320252|PMID:22228304)
UniProtKB
MGI
PMID:16641247, PMID:22049910, PMID:22228304 MGI:MGI:3623875, MGI:MGI:5320252 NCBI chrNW_004955403:8,195,241...8,261,402
Ensembl chrNW_004955403:8,195,255...8,261,402
JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:8463258 RGD:633710 NCBI chrNW_004955447:14,552,846...14,607,416
Ensembl chrNW_004955447:14,574,407...14,607,416
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gldc glycine decarboxylase ISO (PMID:28244183) UniProtKB PMID:28244183 NCBI chrNW_004955434:10,431,434...10,533,118
Ensembl chrNW_004955434:10,431,983...10,533,002
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amt aminomethyltransferase ISO (PMID:16051266) UniProtKB PMID:16051266 NCBI chrNW_004955532:1,351,743...1,358,220
Ensembl chrNW_004955532:1,351,743...1,358,220
JBrowse link
G Gcsh glycine cleavage system protein H ISO RGD PMID:6402507 RGD:1598699 NCBI chrNW_004955522:3,858,156...3,869,730 JBrowse link
G Gldc glycine decarboxylase ISO RGD PMID:6778858 RGD:1642728 NCBI chrNW_004955434:10,431,434...10,533,118
Ensembl chrNW_004955434:10,431,983...10,533,002
JBrowse link
histidine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hal histidine ammonia-lyase ISO (MGI:MGI:52899|PMID:8486363) MGI PMID:8486363 MGI:MGI:52899 NCBI chrNW_004955405:32,317,345...32,341,409
Ensembl chrNW_004955405:32,316,326...32,341,485
JBrowse link
G Hdc histidine decarboxylase ISO (PMID:22767596)
(MGI:MGI:2138019|PMID:11478947)
UniProtKB
MGI
PMID:11478947, PMID:22767596 MGI:MGI:2138019 NCBI chrNW_004955409:4,051,574...4,072,641
Ensembl chrNW_004955409:4,051,271...4,072,642
JBrowse link
G Uroc1 urocanate hydratase 1 ISO (PMID:19304569) BHF-UCL PMID:19304569 NCBI chrNW_004955421:21,734,910...21,765,754
Ensembl chrNW_004955421:21,732,262...21,765,772
JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase ISO (PMID:18776696), (PMID:24416422) UniProtKB PMID:18776696, PMID:24416422 NCBI chrNW_004955407:38,924,355...38,939,790 JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO (PMID:11466310) BHF-UCL PMID:11466310 NCBI chrNW_004955504:5,412,290...5,435,409
Ensembl chrNW_004955504:5,413,586...5,435,645
JBrowse link
isoleucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase short/branched chain ISO (PMID:11013134) UniProt PMID:11013134 NCBI chrNW_004955477:1,177,704...1,213,347
Ensembl chrNW_004955477:1,177,680...1,213,347
JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:1979337), (PMID:8103405) BHF-UCL PMID:1979337, PMID:8103405 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 ISO (MGI:MGI:3770498|PMID:17767905) RGD
MGI
PMID:11733007, PMID:17767905 MGI:MGI:3770498, RGD:1582175 NCBI chrNW_004955559:1,785,253...1,796,838
Ensembl chrNW_004955559:1,785,253...1,797,899
JBrowse link
G Bckdk branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chrNW_004955493:7,940,358...7,946,317
Ensembl chrNW_004955493:7,940,315...7,946,317
JBrowse link
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 ISO (PMID:18996107), (PMID:19706438) UniProt PMID:18996107, PMID:19706438 NCBI chrNW_004955475:478,690...481,029
Ensembl chrNW_004955475:478,690...481,029
JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO (PMID:17696873), (PMID:18492492), (PMID:22198249) UniProtKB PMID:17696873, PMID:18492492, PMID:22198249 NCBI chrNW_004955542:710,506...720,564
Ensembl chrNW_004955542:710,005...717,741
JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt2 alanine--glyoxylate aminotransferase 2 ISO (PMID:20018850) BHF-UCL PMID:20018850 NCBI chrNW_004955426:20,102,368...20,142,596
Ensembl chrNW_004955426:20,101,620...20,142,620
JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO (PMID:18492492) UniProtKB PMID:18492492 NCBI chrNW_004955542:710,506...720,564
Ensembl chrNW_004955542:710,005...717,741
JBrowse link
G Cbs cystathionine beta-synthase ISO (PMID:15520012) UniProtKB PMID:15520012 NCBI chrNW_004955407:38,924,355...38,939,790 JBrowse link
G Cdo1 cysteine dioxygenase type 1 ISO RGD PMID:16611641 RGD:2301357 NCBI chrNW_004955408:35,593,981...35,605,189
Ensembl chrNW_004955408:35,593,767...35,605,189
JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chrNW_004955458:423,156...449,763
Ensembl chrNW_004955458:423,085...433,429
JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chrNW_004955458:423,156...449,763
Ensembl chrNW_004955458:423,085...433,429
JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase ISO (MGI:MGI:1350812|PMID:10567240) MGI PMID:10567240 MGI:MGI:1350812 NCBI chrNW_004955479:3,746,003...3,805,835
Ensembl chrNW_004955479:3,742,757...3,814,338
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase ISO (PMID:10642506) UniProtKB PMID:10642506 NCBI chrNW_004955481:4,128,503...4,225,027
Ensembl chrNW_004955481:4,128,509...4,143,334
JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qdpr quinoid dihydropteridine reductase ISO RGD PMID:4155291 RGD:5128604 NCBI chrNW_004955480:6,646,088...6,666,866
Ensembl chrNW_004955480:6,646,088...6,669,526
JBrowse link
L-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta-synthase ISO (PMID:18776696) UniProtKB PMID:18776696 NCBI chrNW_004955407:38,924,355...38,939,790 JBrowse link
G Sds serine dehydratase ISO (PMID:15689518), (PMID:18342636) UniProtKB PMID:15689518, PMID:18342636 NCBI chrNW_004955482:9,646,523...9,653,471
Ensembl chrNW_004955482:9,643,919...9,653,375
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO (PMID:17482557) UniProtKB PMID:17482557 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202
JBrowse link
leucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bckdk branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chrNW_004955493:7,940,358...7,946,317
Ensembl chrNW_004955493:7,940,315...7,946,317
JBrowse link
G Ivd isovaleryl-CoA dehydrogenase ISO (PMID:7640268)
PMID:6401713
UniProt
BHF-UCL
PMID:6401713, PMID:7640268 RGD:8554099 NCBI chrNW_004955416:7,327,557...7,341,533
Ensembl chrNW_004955416:7,327,557...7,346,027
JBrowse link
methionine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A ISO (PMID:10677294) UniProtKB PMID:10677294 NCBI chrNW_004955510:283,860...300,991
Ensembl chrNW_004955510:281,331...300,985
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 ISO (PMID:19278978) BHF-UCL PMID:19278978 NCBI chrNW_004955406:39,552,034...39,645,694
Ensembl chrNW_004955406:39,552,019...39,645,694
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otc ornithine carbamoyltransferase ISO (PMID:2556444), (PMID:8112735) BHF-UCL PMID:2556444, PMID:8112735 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176
JBrowse link
prenylcysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcyox1 prenylcysteine oxidase 1 ISO (MGI:MGI:2388263|PMID:12151402) MGI PMID:12151402 MGI:MGI:2388263 NCBI chrNW_004955424:14,854,755...14,865,920
Ensembl chrNW_004955424:14,855,106...14,865,840
JBrowse link
proline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino acid oxidase ISO (PMID:16616139) UniProtKB PMID:16616139 NCBI chrNW_004955455:10,095,597...10,127,244
Ensembl chrNW_004955455:10,095,300...10,127,666
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahcy adenosylhomocysteinase ISO (MGI:MGI:2183618|PMID:12023972) RGD
MGI
PMID:11741948, PMID:12023972 MGI:MGI:2183618, RGD:730275 NCBI chrNW_004955422:26,992,295...27,013,100
Ensembl chrNW_004955422:26,992,295...27,013,100
JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chrNW_004955542:2,453,826...2,472,951
Ensembl chrNW_004955542:2,454,708...2,472,851
JBrowse link
serine family amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase like 2 ISO (MGI:MGI:3690523|PMID:17034760) BHF-UCL PMID:17034760 MGI:MGI:3690523 NCBI chrNW_004955424:526,967...543,603
Ensembl chrNW_004955424:526,602...543,603
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acmsd aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chrNW_004955440:2,348,434...2,412,706
Ensembl chrNW_004955440:2,348,396...2,412,706
JBrowse link
G Kynu kynureninase ISO (PMID:17334708) UniProtKB PMID:17334708 NCBI chrNW_004955440:9,420,141...9,536,767
Ensembl chrNW_004955440:9,420,009...9,536,761
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004955440:9,420,141...9,536,767
Ensembl chrNW_004955440:9,420,009...9,536,761
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO RGD PMID:7236232 RGD:2303721 NCBI chrNW_004955471:11,229,795...11,245,255
Ensembl chrNW_004955471:11,229,273...11,245,375
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afmid arylformamidase ISO (MGI:MGI:3587527|PMID:15866519) MGI PMID:15866519 MGI:MGI:3587527 NCBI chrNW_004955506:4,351,623...4,379,528
Ensembl chrNW_004955506:4,365,926...4,379,447
JBrowse link
G Ido1 indoleamine 2,3-dioxygenase 1 ISO (MGI:MGI:2151782|PMID:2419335), (MGI:MGI:2156954|PMID:11751753) MGI
RGD
PMID:2419335, PMID:10719243, PMID:11513477, PMID:11751753 MGI:MGI:2151782, MGI:MGI:2156954, RGD:2290190, RGD:2290543 NCBI chrNW_004955536:2,944,770...2,955,829
Ensembl chrNW_004955536:2,943,611...2,955,829
JBrowse link
G Ido2 indoleamine 2,3-dioxygenase 2 ISO (PMID:17671174)
(MGI:MGI:3712725|PMID:17499941)
(MGI:MGI:3719924|PMID:17671174)
UniProtKB
MGI
PMID:17499941, PMID:17671174 MGI:MGI:3712725, MGI:MGI:3719924 NCBI chrNW_004955536:2,894,410...2,938,862
Ensembl chrNW_004955536:2,894,308...2,939,016
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase ISO (PMID:27762317) UniProtKB PMID:27762317 NCBI chrNW_004955471:11,229,795...11,245,255
Ensembl chrNW_004955471:11,229,273...11,245,375
JBrowse link
tyrosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hpd 4-hydroxyphenylpyruvate dioxygenase ISO PMID:8814303 UniProt PMID:8814303 RGD:8554707 NCBI chrNW_004955482:6,586,975...6,595,034
Ensembl chrNW_004955482:6,586,975...6,595,034
JBrowse link
G Tat tyrosine aminotransferase ISO (PMID:7999802)
(MGI:MGI:5430853|PMID:21153519)
UniProtKB PMID:7999802, PMID:21153519 MGI:MGI:5430853 NCBI chrNW_004955484:4,278,083...4,287,535
Ensembl chrNW_004955484:4,276,953...4,287,627
JBrowse link
valine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh6a1 aldehyde dehydrogenase 6 family member A1 ISO (PMID:23835272) RGD
BHF-UCL
PMID:2768248, PMID:23835272 RGD:1599052 NCBI chrNW_004955523:1,343,545...1,369,080
Ensembl chrNW_004955523:1,343,545...1,369,073
JBrowse link
G Bckdk branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chrNW_004955493:7,940,358...7,946,317
Ensembl chrNW_004955493:7,940,315...7,946,317
JBrowse link
G Hibadh 3-hydroxyisobutyrate dehydrogenase ISO (PMID:16466957) UniProtKB PMID:16466957 NCBI chrNW_004955410:29,180,411...29,294,273
Ensembl chrNW_004955410:29,180,184...29,294,315
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7610
      primary metabolic process 6765
        cellular amino acid metabolic process 185
          cellular amino acid catabolic process 63
            alpha-amino acid catabolic process + 56
            amino acid catabolic process via Ehrlich pathway + 0
            anaerobic amino acid catabolic process + 0
            aromatic amino acid family catabolic process + 12
            beta-alanine catabolic process + 1
            branched-chain amino acid catabolic process + 12
            fructoselysine catabolic process 0
            gamma-aminobutyric acid catabolic process + 2
            sulfur amino acid catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 11892
    metabolic process 7610
      small molecule metabolic process 1236
        organic acid metabolic process 694
          oxoacid metabolic process 675
            carboxylic acid metabolic process 645
              cellular amino acid metabolic process 185
                cellular amino acid catabolic process 63
                  alpha-amino acid catabolic process + 56
                  amino acid catabolic process via Ehrlich pathway + 0
                  anaerobic amino acid catabolic process + 0
                  aromatic amino acid family catabolic process + 12
                  beta-alanine catabolic process + 1
                  branched-chain amino acid catabolic process + 12
                  fructoselysine catabolic process 0
                  gamma-aminobutyric acid catabolic process + 2
                  sulfur amino acid catabolic process + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.