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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular amino acid catabolic process
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Accession:GO:0009063 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid catabolic process;   cellular amino acid breakdown;   cellular amino acid catabolism;   cellular amino acid degradation


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4-hydroxyproline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 ISO (PMID:21998747) BHF-UCL PMID:21998747 NCBI chr10:94,204,627...94,233,312 JBrowse link
arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDAH1 dimethylarginine dimethylaminohydrolase 1 ISO (PMID:24895913) BHF-UCL PMID:24895913 NCBI chr 1:117,875,875...118,136,304 JBrowse link
G FAH fumarylacetoacetate hydrolase ISO (MGI:MGI:1929783|PMID:11209059) MGI PMID:11209059 MGI:MGI:1929783 NCBI chr15:59,121,657...59,155,229
Ensembl chr15:78,048,571...78,115,098
JBrowse link
G NOS1 nitric oxide synthase 1 ISO PMID:1383204 BHF-UCL PMID:1383204 RGD:8553334 NCBI chr12:114,784,232...114,938,385
Ensembl chr12:118,163,655...118,314,005
JBrowse link
G NOS2 nitric oxide synthase 2 ISO (MGI:MGI:3807772|PMID:1383204)
(PMID:7504305)
BHF-UCL PMID:1383204, PMID:7504305 MGI:MGI:3807772 NCBI chr17:28,984,295...29,021,516
Ensembl chr17:29,471,510...29,617,093
JBrowse link
G NOS3 nitric oxide synthase 3 ISO (PMID:1378832), (PMID:7488039) BHF-UCL PMID:1378832, PMID:7488039 NCBI chr 7:142,577,334...142,600,702
Ensembl chr 7:154,730,009...154,755,233
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 ISO RGD PMID:15753084 RGD:8693655 NCBI chr 6:129,372,747...129,383,880
Ensembl chr 6:133,479,966...133,491,162
JBrowse link
G ARG2 arginase 2 ISO RGD PMID:15753084 RGD:8693655 NCBI chr14:48,197,831...48,231,829
Ensembl chr14:67,075,941...67,109,962
JBrowse link
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 ISO (PMID:19839645)
PMID:12753071
UniProtKB
UniProt
PMID:12753071, PMID:19839645 RGD:1299508 NCBI chr11:57,700,104...57,750,371
Ensembl chr11:61,056,817...61,107,485
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase ISO (PMID:9163533) UniProtKB PMID:9163533 NCBI chr 6:108,199,861...108,223,844
Ensembl chr 6:112,269,271...112,292,980
JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 ISO (PMID:2241899) UniProtKB PMID:2241899 NCBI chr10:96,012,345...96,046,266
Ensembl chr10:99,506,205...99,540,178
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 ISO (PMID:2567216) UniProtKB PMID:2567216 NCBI chr16:38,995,770...39,022,750
Ensembl chr16:58,120,781...58,147,378
JBrowse link
beta-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO RGD PMID:2768248 RGD:1599052 NCBI chr14:54,616,531...54,643,346
Ensembl chr14:73,472,255...73,495,734
JBrowse link
branched-chain amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAT1 branched chain amino acid transaminase 1 ISO (MGI:MGI:3027291|PMID:14755340) MGI PMID:14755340 MGI:MGI:3027291 NCBI chr12:61,364,154...61,500,827
Ensembl chr12:63,978,116...64,107,463
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 ISO (MGI:MGI:3027291|PMID:14755340) RGD
MGI
PMID:11733007, PMID:14755340 MGI:MGI:3027291, RGD:1582175 NCBI chr19:45,793,433...45,809,546
Ensembl chr19:54,945,157...54,962,887
JBrowse link
G BCKDHA branched chain keto acid dehydrogenase E1 subunit alpha ISO (PMID:7883996) HGNC PMID:7883996 NCBI chr19:38,391,618...38,418,826 JBrowse link
G BCKDHB branched chain keto acid dehydrogenase E1 subunit beta ISO (PMID:2022752) HGNC PMID:2022752 NCBI chr 6:78,005,287...78,246,287
Ensembl chr 6:81,276,836...81,516,787
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO PMID:1377677 HGNC PMID:1377677 RGD:68712 NCBI chr16:23,856,349...23,860,586
Ensembl chr16:31,476,917...31,483,639
JBrowse link
G IVD isovaleryl-CoA dehydrogenase ISO (PMID:7640268) UniProt PMID:7640268 NCBI chr15:19,342,283...19,372,465
Ensembl chr15:37,596,688...37,609,902
JBrowse link
G SLC25A44 solute carrier family 25 member 44 ISO (PMID:31435015)
(MGI:MGI:6359503|PMID:31435015)
UniProt PMID:31435015 MGI:MGI:6359503 NCBI chr 1:131,535,399...131,556,750
Ensembl chr 1:135,366,049...135,387,643
JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase ISO (MGI:MGI:5442503|PMID:20603179)
(PMID:16616139), (PMID:20603179)
UniProtKB PMID:16616139, PMID:20603179 MGI:MGI:5442503 NCBI chr12:106,453,807...106,475,409
Ensembl chr12:109,849,995...109,870,065
JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase ISO (PMID:20603179)
(MGI:MGI:5442503|PMID:20603179)
UniProtKB PMID:20603179 MGI:MGI:5442503 NCBI chr 6:108,199,861...108,223,844
Ensembl chr 6:112,269,271...112,292,980
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase ISO (PMID:18544534) UniProtKB PMID:18544534 NCBI chr12:106,453,807...106,475,409
Ensembl chr12:109,849,995...109,870,065
JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase ISO (PMID:11561735) UniProt PMID:11561735 NCBI chr16:7,609,282...7,718,049
Ensembl chr16:8,888,178...8,958,420
JBrowse link
G ALDH5A1 aldehyde dehydrogenase 5 family member A1 ISO (PMID:15037717)
(MGI:MGI:2151301|PMID:11544478), (MGI:MGI:3050939|PMID:15262267)
(PMID:9683595)
UniProtKB
MGI
PMID:9683595, PMID:11544478, PMID:15037717, PMID:15262267 MGI:MGI:2151301, MGI:MGI:3050939 NCBI chr 6:24,332,093...24,370,764
Ensembl chr 6:24,665,026...24,705,151
JBrowse link
glutamate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLUD1 glutamate dehydrogenase 1 ISO (PMID:11032875), (PMID:6121377) UniProtKB PMID:6121377, PMID:11032875 NCBI chr10:83,498,338...83,540,730 JBrowse link
G GLUD2 glutamate dehydrogenase 2 ISO (PMID:11032875) BHF-UCL PMID:11032875 NCBI chr  X:110,223,978...111,065,243 JBrowse link
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 ISO (MGI:MGI:53641|PMID:4193185) MGI
RGD
PMID:4193185, PMID:16489927 MGI:MGI:53641, RGD:13504861 NCBI chr10:96,012,345...96,046,266
Ensembl chr10:99,506,205...99,540,178
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 ISO (MGI:MGI:53641|PMID:4193185) MGI
RGD
PMID:4193185, PMID:16489927 MGI:MGI:53641, RGD:13504861 NCBI chr16:38,995,770...39,022,750
Ensembl chr16:58,120,781...58,147,378
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 ISO (MGI:MGI:53641|PMID:4193185) MGI PMID:4193185 MGI:MGI:53641 NCBI chr10:96,012,345...96,046,266
Ensembl chr10:99,506,205...99,540,178
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 ISO (MGI:MGI:53641|PMID:4193185) MGI PMID:4193185 MGI:MGI:53641 NCBI chr16:38,995,770...39,022,750
Ensembl chr16:58,120,781...58,147,378
JBrowse link
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADHFE1 alcohol dehydrogenase iron containing 1 ISO (PMID:16435184) UniProtKB PMID:16435184 NCBI chr 8:62,975,711...63,012,102 JBrowse link
glutamate decarboxylation to succinate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAD2 glutamate decarboxylase 2 ISO RGD PMID:8999827 RGD:1625237 NCBI chr10:26,392,877...26,481,859
Ensembl chr10:26,759,243...26,843,197
JBrowse link
glutamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLS glutaminase ISO (PMID:22049910)
(MGI:MGI:3623875|PMID:16641247)
(MGI:MGI:5320252|PMID:22228304)
UniProtKB
MGI
PMID:16641247, PMID:22049910, PMID:22228304 MGI:MGI:3623875, MGI:MGI:5320252 NCBI chr2B:78,182,117...78,267,071
Ensembl chr2B:196,098,910...196,183,323
JBrowse link
G PPAT phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:8463258 RGD:633710 NCBI chr 4:67,491,407...67,533,822
Ensembl chr 4:74,059,966...74,102,002
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLDC glycine decarboxylase ISO (PMID:28244183) UniProtKB PMID:28244183 NCBI chr 9:6,347,381...6,456,042
Ensembl chr 9:6,527,242...6,635,779
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase ISO (PMID:16051266) UniProtKB PMID:16051266 NCBI chr 3:49,344,590...49,350,383
Ensembl chr 3:50,589,193...50,594,968
JBrowse link
G GCSH glycine cleavage system protein H ISO RGD PMID:6402507 RGD:1598699 NCBI chr16:61,688,959...61,702,364 JBrowse link
G GLDC glycine decarboxylase ISO RGD PMID:6778858 RGD:1642728 NCBI chr 9:6,347,381...6,456,042
Ensembl chr 9:6,527,242...6,635,779
JBrowse link
histidine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAL histidine ammonia-lyase ISO (MGI:MGI:52899|PMID:8486363) MGI PMID:8486363 MGI:MGI:52899 NCBI chr12:93,561,401...93,585,215
Ensembl chr12:96,950,020...96,973,662
JBrowse link
G HDC histidine decarboxylase ISO (MGI:MGI:2138019|PMID:11478947)
(PMID:22767596)
MGI
UniProtKB
PMID:11478947, PMID:22767596 MGI:MGI:2138019 NCBI chr15:29,188,296...29,212,327
Ensembl chr15:47,510,629...47,534,577
JBrowse link
G UROC1 urocanate hydratase 1 ISO (PMID:19304569) BHF-UCL PMID:19304569 NCBI chr 3:123,530,644...123,569,337
Ensembl chr 3:130,846,775...130,882,119
JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase ISO (PMID:18776696), (PMID:24416422) UniProtKB PMID:18776696, PMID:24416422 NCBI chr21:29,361,519...29,385,610 JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase ISO (PMID:11466310) BHF-UCL PMID:11466310 NCBI chr 5:8,195,868...8,228,071
Ensembl chr 5:8,017,403...8,049,322
JBrowse link
isoleucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADSB acyl-CoA dehydrogenase short/branched chain ISO (PMID:11013134) UniProt PMID:11013134 NCBI chr10:119,565,913...119,612,092
Ensembl chr10:123,839,570...123,886,759
JBrowse link
G ACAT1 acetyl-CoA acetyltransferase 1 ISO (PMID:1979337), (PMID:8103405) BHF-UCL PMID:1979337, PMID:8103405 NCBI chr11:103,008,564...103,034,697
Ensembl chr11:106,483,563...106,509,787
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 ISO (MGI:MGI:3770498|PMID:17767905) RGD
MGI
PMID:11733007, PMID:17767905 MGI:MGI:3770498, RGD:1582175 NCBI chr19:45,793,433...45,809,546
Ensembl chr19:54,945,157...54,962,887
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr16:23,856,349...23,860,586
Ensembl chr16:31,476,917...31,483,639
JBrowse link
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 ISO (PMID:18996107), (PMID:19706438) UniProt PMID:18996107, PMID:19706438 NCBI chr  X:45,645,849...45,649,039
Ensembl chr  X:53,754,164...53,757,643
JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase ISO (PMID:17696873), (PMID:18492492), (PMID:22198249) UniProtKB PMID:17696873, PMID:18492492, PMID:22198249 NCBI chr2B:128,125,289...128,137,091
Ensembl chr2B:246,928,784...246,939,837
JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT2 alanine--glyoxylate aminotransferase 2 ISO (PMID:20018850) BHF-UCL PMID:20018850 NCBI chr 5:75,322,351...75,373,261
Ensembl chr 5:80,601,554...80,652,575
JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase ISO (PMID:18492492) UniProtKB PMID:18492492 NCBI chr2B:128,125,289...128,137,091
Ensembl chr2B:246,928,784...246,939,837
JBrowse link
G CBS cystathionine beta-synthase ISO (PMID:15520012) UniProtKB PMID:15520012 NCBI chr21:29,361,519...29,385,610 JBrowse link
G CDO1 cysteine dioxygenase type 1 ISO RGD PMID:16611641 RGD:2301357 NCBI chr 5:111,159,041...111,170,965
Ensembl chr 5:116,955,295...116,967,506
JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr12:35,572,064...35,598,077
Ensembl chr12:36,354,437...36,379,738
JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr12:35,572,064...35,598,077
Ensembl chr12:36,354,437...36,379,738
JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase ISO (MGI:MGI:1350812|PMID:10567240) MGI PMID:10567240 MGI:MGI:1350812 NCBI chr 7:114,084,792...114,155,558
Ensembl chr 7:126,769,655...126,840,346
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIPOX pipecolic acid and sarcosine oxidase ISO (PMID:10642506) UniProtKB PMID:10642506 NCBI chr17:27,717,083...27,820,776
Ensembl chr17:28,225,831...28,240,210
JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G QDPR quinoid dihydropteridine reductase ISO RGD PMID:4155291 RGD:5128604 NCBI chr 4:11,906,439...11,932,311
Ensembl chr 4:17,199,772...17,225,667
JBrowse link
L-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase ISO (PMID:18776696) UniProtKB PMID:18776696 NCBI chr21:29,361,519...29,385,610 JBrowse link
G SDS serine dehydratase ISO (PMID:15689518), (PMID:18342636) UniProtKB PMID:15689518, PMID:18342636 NCBI chr12:110,995,164...111,006,668
Ensembl chr12:114,377,650...114,388,839
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO (PMID:17482557) UniProtKB PMID:17482557 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
leucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr16:23,856,349...23,860,586
Ensembl chr16:31,476,917...31,483,639
JBrowse link
G IVD isovaleryl-CoA dehydrogenase ISO (PMID:7640268)
PMID:6401713
UniProt
BHF-UCL
PMID:6401713, PMID:7640268 RGD:8554099 NCBI chr15:19,342,283...19,372,465
Ensembl chr15:37,596,688...37,609,902
JBrowse link
methionine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A ISO (PMID:10677294) UniProtKB PMID:10677294 NCBI chr10:76,677,815...76,697,512
Ensembl chr10:80,280,063...80,298,291
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 ISO (PMID:19278978) BHF-UCL PMID:19278978 NCBI chr 1:179,231,712...179,348,759
Ensembl chr 1:183,580,773...183,639,882
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine carbamoyltransferase ISO (PMID:2556444), (PMID:8112735) BHF-UCL PMID:2556444, PMID:8112735 NCBI chr  X:30,796,828...30,868,144
Ensembl chr  X:38,505,232...38,575,819
JBrowse link
prenylcysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCYOX1 prenylcysteine oxidase 1 ISO (MGI:MGI:2388263|PMID:12151402) MGI PMID:12151402 MGI:MGI:2388263 NCBI chr2A:70,313,204...70,335,361
Ensembl chr2A:71,429,514...71,449,292
JBrowse link
proline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase ISO (PMID:16616139) UniProtKB PMID:16616139 NCBI chr12:106,453,807...106,475,409
Ensembl chr12:109,849,995...109,870,065
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO (MGI:MGI:2183618|PMID:12023972) MGI
RGD
PMID:11741948, PMID:12023972 MGI:MGI:2183618, RGD:730275 NCBI chr20:30,603,701...30,626,835
Ensembl chr20:31,738,007...31,760,803
JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCLY selenocysteine lyase ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr2B:125,276,540...125,331,057
Ensembl chr2B:244,144,105...244,181,767
JBrowse link
serine family amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THNSL2 threonine synthase like 2 ISO (MGI:MGI:3690523|PMID:17034760) BHF-UCL PMID:17034760 MGI:MGI:3690523 NCBI chr2A:87,303,022...87,319,494
Ensembl chr2A:89,212,442...89,228,446
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chr2B:24,958,661...25,019,901
Ensembl chr2B:138,918,281...138,978,407
JBrowse link
G KYNU kynureninase ISO (PMID:17334708) UniProtKB PMID:17334708 NCBI chr2B:16,792,401...16,947,766
Ensembl chr2B:146,975,995...147,132,634
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr2B:16,792,401...16,947,766
Ensembl chr2B:146,975,995...147,132,634
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase ISO RGD PMID:7236232 RGD:2303721 NCBI chr 4:148,269,097...148,285,533
Ensembl chr 4:160,085,645...160,102,266
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase ISO (MGI:MGI:3587527|PMID:15866519) MGI PMID:15866519 MGI:MGI:3587527 NCBI chr17:72,265,365...72,285,764
Ensembl chr17:77,816,908...77,835,905
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 ISO (MGI:MGI:2151782|PMID:2419335), (MGI:MGI:2156954|PMID:11751753) MGI
RGD
PMID:2419335, PMID:10719243, PMID:11513477, PMID:11751753 MGI:MGI:2151782, MGI:MGI:2156954, RGD:2290190, RGD:2290543 NCBI chr 8:39,108,310...39,123,611
Ensembl chr 8:36,617,312...36,632,352
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 ISO (MGI:MGI:3719924|PMID:17671174)
(MGI:MGI:3712725|PMID:17499941)
(PMID:17671174)
MGI
UniProtKB
PMID:17499941, PMID:17671174 MGI:MGI:3712725, MGI:MGI:3719924 NCBI chr 8:39,149,045...39,209,671
Ensembl chr 8:36,665,240...36,717,420
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase ISO (PMID:27762317) UniProtKB PMID:27762317 NCBI chr 4:148,269,097...148,285,533
Ensembl chr 4:160,085,645...160,102,266
JBrowse link
tyrosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HPD 4-hydroxyphenylpyruvate dioxygenase ISO PMID:8814303 UniProt PMID:8814303 RGD:8554707 NCBI chr12:119,442,893...119,462,171
Ensembl chr12:122,813,141...122,831,701
JBrowse link
G TAT tyrosine aminotransferase ISO (PMID:7999802)
(MGI:MGI:5430853|PMID:21153519)
UniProtKB PMID:7999802, PMID:21153519 MGI:MGI:5430853 NCBI chr16:53,434,028...53,443,624
Ensembl chr16:71,404,399...71,413,886
JBrowse link
valine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO (PMID:23835272) BHF-UCL
RGD
PMID:2768248, PMID:23835272 RGD:1599052 NCBI chr14:54,616,531...54,643,346
Ensembl chr14:73,472,255...73,495,734
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr16:23,856,349...23,860,586
Ensembl chr16:31,476,917...31,483,639
JBrowse link
G HIBADH 3-hydroxyisobutyrate dehydrogenase ISO (PMID:16466957) UniProtKB PMID:16466957 NCBI chr 7:28,166,127...28,299,845
Ensembl chr 7:27,763,021...27,896,598
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12564
    metabolic process 7979
      primary metabolic process 7070
        cellular amino acid metabolic process 189
          cellular amino acid catabolic process 65
            alpha-amino acid catabolic process + 58
            amino acid catabolic process via Ehrlich pathway + 0
            anaerobic amino acid catabolic process + 0
            aromatic amino acid family catabolic process + 12
            beta-alanine catabolic process + 1
            branched-chain amino acid catabolic process + 12
            fructoselysine catabolic process 0
            gamma-aminobutyric acid catabolic process + 2
            sulfur amino acid catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 12564
    metabolic process 7979
      small molecule metabolic process 1315
        organic acid metabolic process 751
          oxoacid metabolic process 732
            carboxylic acid metabolic process 695
              cellular amino acid metabolic process 189
                cellular amino acid catabolic process 65
                  alpha-amino acid catabolic process + 58
                  amino acid catabolic process via Ehrlich pathway + 0
                  anaerobic amino acid catabolic process + 0
                  aromatic amino acid family catabolic process + 12
                  beta-alanine catabolic process + 1
                  branched-chain amino acid catabolic process + 12
                  fructoselysine catabolic process 0
                  gamma-aminobutyric acid catabolic process + 2
                  sulfur amino acid catabolic process + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.