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ONTOLOGY REPORT - ANNOTATIONS


Term:aerobic respiration
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Accession:GO:0009060 term browser browse the term
Definition:The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
Synonyms:xref: MetaCyc:PWY-3781;   Wikipedia:Cellular_respiration#Aerobic_respiration


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aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase ISO RGD PMID:3777158 RGD:1598765 NCBI chrNW_004936492:1,423,780...1,440,825 JBrowse link
G Atp5f1d ATP synthase F1 subunit delta ISO (PMID:29478781) UniProt PMID:29478781 NCBI chrNW_004936588:612,255...614,894 JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chrNW_004936646:186,422...190,870 JBrowse link
G Cat catalase ISO (MGI:3050704|PMID:15178682) MGI PMID:15178682 MGI:3050704 NCBI chrNW_004936533:3,601,270...3,637,128 JBrowse link
G Fxn frataxin ISO (MGI:3611157|PMID:16278235)
(MGI:2158372|PMID:9405681)
MGI PMID:9405681 PMID:16278235 MGI:2158372 MGI:3611157 NCBI chrNW_004936503:5,323,206...5,343,228 JBrowse link
G LOC101967907 protoheme IX farnesyltransferase, mitochondrial ISO (MGI:3640032|PMID:16782876) MGI PMID:16782876 MGI:3640032 NCBI chrNW_004936724:783,591...905,625 JBrowse link
G Mdh2 malate dehydrogenase 2 ISO (PMID:27989324) UniProtKB PMID:27989324 NCBI chrNW_004936543:2,194,074...2,208,626 JBrowse link
G Mtfr1 mitochondrial fission regulator 1 ISO (MGI:5320275|PMID:20568109) UniProt PMID:20568109 MGI:5320275 NCBI chrNW_004936496:8,171,020...8,223,712 JBrowse link
G Mtfr2 mitochondrial fission regulator 2 ISO (MGI:5320275|PMID:20568109) UniProt PMID:20568109 MGI:5320275 NCBI chrNW_004936560:3,656,639...3,670,923 JBrowse link
G Oxa1l OXA1L mitochondrial inner membrane protein ISO (PMID:7991568) UniProtKB PMID:7991568 NCBI chrNW_004936722:1,524,116...1,528,659 JBrowse link
G Pank2 pantothenate kinase 2 ISO (MGI:5461110|PMID:22983956) MGI PMID:22983956 MGI:5461110 NCBI chrNW_004936485:14,785,050...14,804,258 JBrowse link
G Sirt3 sirtuin 3 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chrNW_004936888:63,131...78,536 JBrowse link
G Ucn urocortin ISO negative regulation RGD PMID:11597609 RGD:5508185 NCBI chrNW_004936493:5,258,574...5,260,692 JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase ISO (PMID:27323408) UniProtKB PMID:27323408 NCBI chrNW_004936564:4,553,758...4,755,126 JBrowse link
regulation of aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 ISO (MGI:3759354|PMID:17828264) UniProt PMID:17828264 MGI:3759354 NCBI chrNW_004936599:3,033,854...3,046,364 JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO RGD PMID:24601882 RGD:39128160 NCBI chrNW_004936621:620,163...639,115 JBrowse link
G Bnip3 BCL2 interacting protein 3 ISO (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chrNW_004936486:18,449,371...18,460,435 JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 ISO (PMID:23840896) UniProtKB PMID:23840896 NCBI chrNW_004936641:857,483...875,527 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chrNW_004936495:5,770,988...5,816,157 JBrowse link
G Ide insulin degrading enzyme ISO (PMID:23525105) ARUK-UCL PMID:23525105 NCBI chrNW_004936601:2,230,477...2,318,562 JBrowse link
G Nop53 NOP53 ribosome biogenesis factor ISO (PMID:24556985) UniProtKB PMID:24556985 NCBI chrNW_004936664:1,334,487...1,343,867 JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO (PMID:29364879), (PMID:29452640)
(MGI:6148506|PMID:29323231)
UniProtKB
UniProt
PMID:29323231 PMID:29364879 PMID:29452640 MGI:6148506 NCBI chrNW_004936646:1,422,844...1,427,929 JBrowse link
G Trpv4 transient receptor potential cation channel subfamily V member 4 ISO (MGI:5440106|PMID:23021218) UniProt PMID:23021218 MGI:5440106 NCBI chrNW_004936769:1,424,526...1,447,547 JBrowse link
G Vcp valosin containing protein ISO (PMID:23498975) ParkinsonsUK-UCL PMID:23498975 NCBI chrNW_004936524:3,085,959...3,102,461 JBrowse link
tricarboxylic acid cycle term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco2 aconitase 2 ISO (PMID:9630632) MGI
RGD
PMID:9630632 PMID:9712727 RGD:2306877 NCBI chrNW_004936492:407,482...452,538 JBrowse link
G Cs citrate synthase ISO RGD PMID:938457 PMID:9712727 RGD:2306828 RGD:2306877 NCBI chrNW_004936646:676,926...704,988 JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISO (PMID:30929736) UniProt PMID:30929736 NCBI chrNW_004936488:4,038,985...4,061,071 JBrowse link
G Fh fumarate hydratase ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004936526:8,936,096...8,965,155 JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO (PMID:2252888) RGD
UniProt
PMID:938457 PMID:2252888 RGD:2306828 NCBI chrNW_004936471:36,823,003...36,842,576 JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004936485:16,033,287...16,038,097 JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004936809:666,231...675,279 JBrowse link
G Mdh2 malate dehydrogenase 2 ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004936543:2,194,074...2,208,626 JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO RGD PMID:9712727 RGD:2306877 NCBI chrNW_004936478:19,506,845...19,584,411 JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO (PMID:9533030) UniProtKB PMID:9533030 NCBI chrNW_004936612:2,357,336...2,369,204 JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004936565:1,313,150...1,355,693 JBrowse link
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004936650:3,278,769...3,313,537 JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004936603:243,113...378,526 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  biological_process 12031
    cellular process 11219
      cellular metabolic process 6990
        generation of precursor metabolites and energy 308
          energy derivation by oxidation of organic compounds 185
            cellular respiration 106
              aerobic respiration 36
                aerobic electron transport chain + 1
                aerobic respiration, using ammonia as electron donor 0
                aerobic respiration, using arsenite as electron donor 0
                aerobic respiration, using carbon monoxide as electron donor 0
                aerobic respiration, using ferrous ions as electron donor 0
                aerobic respiration, using hydrogen as electron donor 0
                aerobic respiration, using nitrite as electron donor 0
                aerobic respiration, using sulfur or sulfate as electron donor 0
                alternative respiration 0
                regulation of aerobic respiration 10
                tricarboxylic acid cycle + 13
paths to the root