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ONTOLOGY REPORT - ANNOTATIONS

Term:aerobic respiration
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Accession:GO:0009060 term browser browse the term
Definition:The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
Synonyms:xref: MetaCyc:PWY-3781;   Wikipedia:Cellular_respiration#Aerobic_respiration

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aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADSL adenylosuccinate lyase ISO RGD PMID:3777158 RGD:1598765 NCBI chr 5:8,027,799...8,045,480
Ensembl chr 5:7,985,700...8,045,510 		JBrowse link
G ATP5F1D ATP synthase F1 subunit delta IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:77,216,430...77,219,301
Ensembl chr 2:77,216,433...77,222,749 		JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chr 5:21,156,460...21,160,738
Ensembl chr 5:21,147,767...21,160,738 		JBrowse link
G CAT catalase IEA Ensembl GO_REF:0000107 NCBI chr 2:26,493,664...26,533,881
Ensembl chr 2:26,487,653...26,581,452 		JBrowse link
G COX10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 IEA Ensembl GO_REF:0000107 NCBI chr12:58,011,831...58,110,575
Ensembl chr12:58,011,831...58,117,700 		JBrowse link
G FXN frataxin ISO (MGI:2158372|PMID:9405681)
(MGI:3611157|PMID:16278235)		 MGI PMID:9405681 PMID:16278235 MGI:2158372 MGI:3611157 NCBI chr 1:222,412,485...222,433,224
Ensembl chr 1:222,412,500...222,461,943 		JBrowse link
G LOC100524873 cytochrome b-c1 complex subunit 6, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:165,123,915...165,134,375 JBrowse link
G MDH2 malate dehydrogenase 2 ISS UniProt GO_REF:0000024 NCBI chr 3:10,120,121...10,132,705
Ensembl chr 3:10,120,084...10,132,830 		JBrowse link
G MT-CO1 mitochondrially encoded cytochrome c oxidase I IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:6,511...8,055
Ensembl chr MT:6,511...8,055 		JBrowse link
G MT-CO3 mitochondrially encoded cytochrome c oxidase III IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:9,800...10,583
Ensembl chr MT:9,800...10,583 		JBrowse link
G MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:3,922...4,876
Ensembl chr MT:3,922...4,876 		JBrowse link
G MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:11,359...12,736
Ensembl chr MT:11,359...12,736 		JBrowse link
G MTFR1 mitochondrial fission regulator 1 IEA
IBA		 (PMID:21873635) Ensembl
GO_Central		 PMID:21873635 GO_REF:0000107 NCBI chr 4:68,902,854...68,969,998
Ensembl chr 4:68,902,857...68,969,615 		JBrowse link
G MTFR1L mitochondrial fission regulator 1 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:83,265,351...83,277,774
Ensembl chr 6:83,265,420...83,280,250 		JBrowse link
G MTFR2 mitochondrial fission regulator 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:27,906,162...27,998,861
Ensembl chr 1:27,908,824...28,015,101 		JBrowse link
G NDUFS7 NADH:ubiquinone oxidoreductase core subunit S7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:77,080,311...77,087,141 JBrowse link
G NDUFS8 NADH:ubiquinone oxidoreductase core subunit S8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:4,863,295...4,867,392
Ensembl chr 2:4,848,599...4,885,860 		JBrowse link
G OXA1L OXA1L mitochondrial inner membrane protein ISO (PMID:7991568) UniProtKB PMID:7991568 NCBI chr 7:76,234,710...76,266,700
Ensembl chr 7:76,230,997...76,266,413 		JBrowse link
G PANK2 pantothenate kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr17:31,797,604...31,844,301
Ensembl chr17:31,798,776...31,828,627 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:75,648,362...75,678,111
Ensembl chr 6:75,648,215...75,678,378 		JBrowse link
G SIRT3 sirtuin 3 IEA Ensembl GO_REF:0000107 NCBI chr 2:38,465...55,074
Ensembl chr 2:38,470...55,101 		JBrowse link
G UCN urocortin ISO negative regulation RGD PMID:11597609 RGD:5508185 NCBI chr 3:111,834,082...111,835,932 JBrowse link
G UQCR10 ubiquinol-cytochrome c reductase, complex III subunit X IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:46,783,340...46,786,140
Ensembl chr14:46,783,134...46,786,120 		JBrowse link
G UQCRB ubiquinol-cytochrome c reductase binding protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:40,403,272...40,409,080 JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFG1L AFG1 like ATPase IEA Ensembl GO_REF:0000107 NCBI chr 1:74,367,421...74,590,766
Ensembl chr 1:74,367,488...74,590,624 		JBrowse link
G COX4I1 cytochrome c oxidase subunit 4I1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:3,131,017...3,137,619
Ensembl chr 6:3,131,019...3,240,221 		JBrowse link
G COX4I2 cytochrome c oxidase subunit 4I2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:35,340,499...35,346,090
Ensembl chr17:35,341,876...35,346,007 		JBrowse link
G COX5A cytochrome c oxidase subunit 5A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:58,622,969...58,644,024
Ensembl chr 7:58,622,964...58,644,035 		JBrowse link
G COX5B mitochondrial cytochrome c oxidase subunit Vb IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:56,630,297...56,632,107
Ensembl chr 3:56,629,270...56,632,120 		JBrowse link
G COX6A1 cytochrome c oxidase subunit 6A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:40,408,600...40,410,810
Ensembl chr14:40,408,631...40,423,629 		JBrowse link
G COX6A2 cytochrome c oxidase subunit 6A2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:17,108,623...17,135,108
Ensembl chr 3:17,113,388...17,135,104 		JBrowse link
G COX7C cytochrome c oxidase subunit 7C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:94,345,436...94,347,709
Ensembl chr 2:94,345,438...94,353,027 		JBrowse link
G CYCS cytochrome c, somatic IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:47,169,921...47,172,212
Ensembl chr18:47,169,866...47,173,866 		JBrowse link
G LOC100158196 cytochrome c pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:22,114,860...22,115,384 JBrowse link
G LOC100519295 cytochrome c-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:72,500,149...72,500,463 JBrowse link
G LOC100739590 cytochrome c pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:56,722,357...56,744,653 JBrowse link
G LOC106507972 cytochrome c pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:48,803,991...48,804,397 JBrowse link
G MT-CO1 mitochondrially encoded cytochrome c oxidase I IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:6,511...8,055
Ensembl chr MT:6,511...8,055 		JBrowse link
G MT-CO3 mitochondrially encoded cytochrome c oxidase III IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:9,800...10,583
Ensembl chr MT:9,800...10,583 		JBrowse link
regulation of aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 IEA Ensembl GO_REF:0000107 NCBI chr 2:5,860,386...5,873,779
Ensembl chr 2:5,858,845...5,874,124 		JBrowse link
G AKT1 AKT serine/threonine kinase 1 ISO RGD PMID:24601882 RGD:39128160
G BNIP3 BCL2 interacting protein 3 IEA Ensembl GO_REF:0000107 NCBI chr14:140,362,123...140,371,951
Ensembl chr14:140,362,127...140,371,881 		JBrowse link
G CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:779,164...854,449
Ensembl chr 6:778,967...852,821 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha IEA Ensembl GO_REF:0000107 NCBI chr 1:190,625,436...190,673,926
Ensembl chr 1:190,625,181...190,674,850 		JBrowse link
G IDE insulin degrading enzyme IEA Ensembl GO_REF:0000107 NCBI chr14:103,992,035...104,106,571
Ensembl chr14:103,992,037...104,106,576 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor IEA Ensembl GO_REF:0000107 NCBI chr 6:53,443,453...53,451,707
Ensembl chr 6:53,443,480...53,452,019 		JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:22,535,780...22,540,322
Ensembl chr 5:22,532,894...22,540,321 		JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 IEA Ensembl GO_REF:0000107 NCBI chr14:41,125,819...41,169,582
Ensembl chr14:41,125,869...41,169,582 		JBrowse link
G VCP valosin containing protein IEA Ensembl GO_REF:0000107 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,796,446...235,876,321 		JBrowse link
tricarboxylic acid cycle term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACO1 aconitase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:33,937,833...34,001,895
Ensembl chr10:33,937,833...34,001,900 		JBrowse link
G ACO2 aconitase 2 IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000041 NCBI chr 5:7,014,383...7,071,023
Ensembl chr 5:7,002,124...7,070,999 		JBrowse link
G CS citrate synthase IBA
IEA		 (PMID:21873635) GO_Central
UniProt		 PMID:21873635 GO_REF:0000041 NCBI chr 5:21,669,778...21,700,737
Ensembl chr 5:21,666,510...21,700,736 		JBrowse link
G DHTKD1 dehydrogenase E1 and transketolase domain containing 1 IEA InterPro GO_REF:0000002 NCBI chr10:59,820,418...59,875,322
Ensembl chr10:59,790,073...59,875,245 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase ISS
IEA		 UniProt GO_REF:0000024 GO_REF:0000041 NCBI chr 7:98,091,161...98,111,267
Ensembl chr 7:98,091,123...98,111,572 		JBrowse link
G FH fumarate hydratase IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000041 NCBI chr10:12,404,143...12,431,843
Ensembl chr10:12,404,176...12,431,801 		JBrowse link
G IDH1 isocitrate dehydrogenase (NADP(+)) 1 IEA UniProt GO_REF:0000043 NCBI chr15:111,341,153...111,362,330
Ensembl chr15:111,341,152...111,362,280 		JBrowse link
G IDH2 isocitrate dehydrogenase (NADP(+)) 2 IEA UniProt GO_REF:0000043 NCBI chr 7:55,654,298...55,675,571
Ensembl chr 7:55,651,606...55,681,426 		JBrowse link
G IDH3A isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha IDA
IBA
IEA		 (PMID:2252888)
(PMID:21873635)		 UniProt
GO_Central		 PMID:2252888 PMID:21873635 GO_REF:0000104 NCBI chr 7:47,759,436...47,778,948
Ensembl chr 7:47,759,431...47,778,956 		JBrowse link
G IDH3B isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000043 GO_REF:0000104 NCBI chr17:32,955,061...32,960,110
Ensembl chr17:32,955,101...32,960,106 		JBrowse link
G IDH3G isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000104 NCBI chr  X:124,528,643...124,537,570
Ensembl chr  X:124,528,644...124,538,298 		JBrowse link
G IREB2 iron responsive element binding protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:47,481,539...47,529,199
Ensembl chr 7:47,479,629...47,529,227 		JBrowse link
G MDH1 malate dehydrogenase 1 IBA
IEA		 (PMID:21873635) GO_Central
UniProt		 PMID:21873635 GO_REF:0000043 NCBI chr 3:78,247,229...78,263,085
Ensembl chr 3:78,244,999...78,440,488 		JBrowse link
G MDH1B malate dehydrogenase 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:109,989,095...110,021,237
Ensembl chr15:109,989,062...110,021,195 		JBrowse link
G MDH2 malate dehydrogenase 2 IBA
IEA		 (PMID:21873635) GO_Central
UniProt		 PMID:21873635 GO_REF:0000043 NCBI chr 3:10,120,121...10,132,705
Ensembl chr 3:10,120,084...10,132,830 		JBrowse link
G OGDH oxoglutarate dehydrogenase IBA
IEA		 (PMID:21873635) GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr18:50,609,415...50,684,990
Ensembl chr18:50,609,418...50,684,964 		JBrowse link
G OGDHL oxoglutarate dehydrogenase L IEA
IBA		 (PMID:21873635) InterPro
GO_Central		 PMID:21873635 GO_REF:0000002 NCBI chr14:90,207,439...90,235,500
Ensembl chr14:90,207,608...90,236,369 		JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 IEA UniProt GO_REF:0000043 NCBI chr  X:15,699,924...15,718,908
Ensembl chr  X:15,700,050...15,718,904 		JBrowse link
G SDHA succinate dehydrogenase complex flavoprotein subunit A IEA
IC		 (PMID:15989954) UniProt PMID:15989954 GO_REF:0000041 NCBI chr16:79,838,442...79,862,956 JBrowse link
G SDHAF2 succinate dehydrogenase complex assembly factor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:10,074,965...10,088,185
Ensembl chr 2:10,072,917...10,088,172 		JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B IEA UniProt GO_REF:0000041 NCBI chr 6:75,648,362...75,678,111
Ensembl chr 6:75,648,215...75,678,378 		JBrowse link
G SDHC succinate dehydrogenase complex subunit C IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 NCBI chr 4:89,135,410...89,169,164
Ensembl chr 4:89,130,355...89,169,121 		JBrowse link
G SDHD succinate dehydrogenase complex subunit D IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000041 GO_REF:0000043 NCBI chr 9:39,790,654...39,803,602
Ensembl chr 9:39,790,561...39,803,946 		JBrowse link
G SUCLA2 succinate-CoA ligase ADP-forming subunit beta IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000041 NCBI chr11:19,616,415...19,670,667
Ensembl chr11:19,616,499...19,675,791 		JBrowse link
G SUCLG1 succinate-CoA ligase GDP/ADP-forming subunit alpha IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000041 NCBI chr 3:60,142,340...60,177,497
Ensembl chr 3:60,141,884...60,195,051 		JBrowse link
G SUCLG2 succinate-CoA ligase GDP-forming subunit beta IEA
IBA		 (PMID:21873635) UniProt
GO_Central		 PMID:21873635 GO_REF:0000041 NCBI chr13:48,650,851...49,090,521
Ensembl chr13:48,564,073...49,090,468 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16530
    cellular process 15814
      cellular metabolic process 9504
        generation of precursor metabolites and energy 411
          energy derivation by oxidation of organic compounds 242
            cellular respiration 154
              aerobic respiration 71
                aerobic electron transport chain + 15
                aerobic respiration, using ammonia as electron donor 0
                aerobic respiration, using arsenite as electron donor 0
                aerobic respiration, using carbon monoxide as electron donor 0
                aerobic respiration, using ferrous ions as electron donor 0
                aerobic respiration, using hydrogen as electron donor 0
                aerobic respiration, using nitrite as electron donor 0
                aerobic respiration, using sulfur or sulfate as electron donor 0
                alternative respiration 0
                regulation of aerobic respiration 10
                tricarboxylic acid cycle + 26
paths to the root