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ONTOLOGY REPORT - ANNOTATIONS


Term:aerobic respiration
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Accession:GO:0009060 term browser browse the term
Definition:The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
Synonyms:xref: MetaCyc:PWY-3781;   Wikipedia:Cellular_respiration#Aerobic_respiration


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aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr15:80,948,490...80,970,947
Ensembl chr15:80,948,490...80,970,946
JBrowse link
G Atp5d ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:80,138,698...80,145,828
Ensembl chr10:80,138,632...80,145,818
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:128,919,914...128,923,524
Ensembl chr10:128,917,882...128,924,035
JBrowse link
G Cat catalase IMP (MGI:3050704|PMID:15178682) MGI PMID:15178682 MGI:3050704 NCBI chr 2:103,453,904...103,485,153
Ensembl chr 2:103,453,849...103,485,160
JBrowse link
G Cox10 heme A:farnesyltransferase cytochrome c oxidase assembly factor 10 IMP (MGI:3640032|PMID:16782876) MGI PMID:16782876 MGI:3640032 NCBI chr11:63,962,627...64,079,472
Ensembl chr11:63,962,627...64,079,468
JBrowse link
G Cox20 cytochrome c oxidase assembly protein 20 IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 1:178,318,095...178,322,693
Ensembl chr 1:178,319,130...178,322,693
JBrowse link
G Fxn frataxin IMP (MGI:2158372|PMID:9405681)
(MGI:3611157|PMID:16278235)
MGI PMID:9405681 PMID:16278235 MGI:2158372 MGI:3611157 NCBI chr19:24,259,545...24,280,590
Ensembl chr19:24,261,453...24,280,605
JBrowse link
G Mdh2 malate dehydrogenase 2, NAD (mitochondrial) ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:135,778,649...135,790,386
Ensembl chr 5:135,778,480...135,790,398
JBrowse link
G mt-Co1 cytochrome c oxidase I, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr MT:5,328...6,872
Ensembl chr MT:5,328...6,872
JBrowse link
G mt-Co3 cytochrome c oxidase III, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr MT:8,607...9,390
Ensembl chr MT:8,607...9,390
JBrowse link
G mt-Nd1 NADH dehydrogenase 1, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr MT:2,751...3,707
Ensembl chr MT:2,751...3,707
JBrowse link
G mt-Nd4 NADH dehydrogenase 4, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr MT:10,167...11,544
Ensembl chr MT:10,167...11,544
JBrowse link
G Mtfr1 mitochondrial fission regulator 1 IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5320275|PMID:20568109)
GO_Central
UniProt
PMID:20568109 PMID:21873635 MGI:5320275 MGI:6201960 NCBI chr 3:19,187,315...19,220,817
Ensembl chr 3:19,187,327...19,220,817
JBrowse link
G Mtfr1l mitochondrial fission regulator 1-like IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:134,525,555...134,535,387
Ensembl chr 4:134,525,550...134,535,387
JBrowse link
G Mtfr2 mitochondrial fission regulator 2 IMP
IBA
(MGI:5320275|PMID:20568109)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:20568109 PMID:21873635 MGI:5320275 MGI:6201960 NCBI chr10:20,344,653...20,361,669
Ensembl chr10:20,347,770...20,361,304
JBrowse link
G Mup1 major urinary protein 1 IDA (MGI:3850893|PMID:19336396) UniProt PMID:19336396 MGI:3850893 NCBI chr 4:60,498,012...60,501,960
Ensembl chr 4:60,498,012...60,501,960
JBrowse link
G Ndufs7 NADH:ubiquinone oxidoreductase core subunit S7 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:80,249,105...80,256,794
Ensembl chr10:80,249,121...80,256,794
JBrowse link
G Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:3,908,863...3,912,774
Ensembl chr19:3,908,863...3,912,774
JBrowse link
G Oxa1l oxidase assembly 1-like ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:54,360,841...54,369,669
Ensembl chr14:54,360,834...54,369,673
JBrowse link
G Pank2 pantothenate kinase 2 IMP (MGI:5461110|PMID:22983956) MGI PMID:22983956 MGI:5461110 NCBI chr 2:131,262,008...131,299,188
Ensembl chr 2:131,262,495...131,299,188
JBrowse link
G Sdhb succinate dehydrogenase complex, subunit B, iron sulfur (Ip) IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:140,961,271...140,979,198
Ensembl chr 4:140,961,203...140,979,193
JBrowse link
G Sirt3 sirtuin 3 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:140,863,663...140,882,309
Ensembl chr 7:140,863,666...140,882,309
JBrowse link
G Ucn urocortin ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 5:31,137,989...31,138,895
Ensembl chr 5:31,138,063...31,138,829
JBrowse link
G Uqcr10 ubiquinol-cytochrome c reductase, complex III subunit X IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:4,701,968...4,704,344
Ensembl chr11:4,701,973...4,704,342
JBrowse link
G Uqcrb ubiquinol-cytochrome c reductase binding protein IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:66,900,576...66,905,350
Ensembl chr13:66,900,617...66,905,378
JBrowse link
G Uqcrh ubiquinol-cytochrome c reductase hinge protein IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:116,066,965...116,075,070
Ensembl chr 4:116,066,965...116,075,071
JBrowse link
aerobic electron transport chain term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G mt-Co3 cytochrome c oxidase III, mitochondrial IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr MT:8,607...9,390
Ensembl chr MT:8,607...9,390
JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:42,312,581...42,478,565
Ensembl chr10:42,312,585...42,478,565
JBrowse link
G Cox4i1 cytochrome c oxidase subunit 4I1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:120,668,225...120,674,209
Ensembl chr 8:120,668,222...120,674,207
JBrowse link
G Cox4i2 cytochrome c oxidase subunit 4I2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:152,753,916...152,765,039
Ensembl chr 2:152,754,173...152,765,037
JBrowse link
G Cox5a cytochrome c oxidase subunit 5A IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:57,517,328...57,532,427
Ensembl chr 9:57,521,274...57,532,426
JBrowse link
G Cox5b cytochrome c oxidase subunit 5B IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:36,691,487...36,693,388
Ensembl chr 1:36,691,449...36,693,681
JBrowse link
G Cox6a1 cytochrome c oxidase subunit 6A1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:115,345,652...115,348,958
Ensembl chr 5:115,345,642...115,348,981
JBrowse link
G Cox6a2 cytochrome c oxidase subunit 6A2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:128,205,435...128,206,366
Ensembl chr 7:128,205,435...128,206,387
JBrowse link
G Cox7c cytochrome c oxidase subunit 7C IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:86,044,798...86,046,795
Ensembl chr13:86,044,816...86,046,904
JBrowse link
G Cycs cytochrome c, somatic IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:50,562,563...50,566,569
Ensembl chr 6:50,562,563...50,566,538
JBrowse link
G Cyct cytochrome c, testis IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:76,353,942...76,360,453
Ensembl chr 2:76,353,942...76,360,450
JBrowse link
G mt-Co1 cytochrome c oxidase I, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr MT:5,328...6,872
Ensembl chr MT:5,328...6,872
JBrowse link
G mt-Co3 cytochrome c oxidase III, mitochondrial IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr MT:8,607...9,390
Ensembl chr MT:8,607...9,390
JBrowse link
regulation of aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 IMP (MGI:3759354|PMID:17828264) UniProt PMID:17828264 MGI:3759354 NCBI chr19:4,861,216...4,877,909
Ensembl chr19:4,861,216...4,877,909
JBrowse link
G Akt1 thymoma viral proto-oncogene 1 ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr12:112,653,821...112,674,884
Ensembl chr12:112,653,821...112,674,884
JBrowse link
G Bnip3 BCL2/adenovirus E1B interacting protein 3 IMP (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chr 7:138,890,836...138,909,506
Ensembl chr 7:138,890,836...138,909,519
JBrowse link
G Cbfa2t3 CBFA2/RUNX1 translocation partner 3 ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:122,625,136...122,699,332
Ensembl chr 8:122,625,141...122,699,109
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IMP (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Ide insulin degrading enzyme ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:37,268,743...37,334,544
Ensembl chr19:37,268,743...37,337,852
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:15,937,835...15,946,108
Ensembl chr 7:15,936,183...15,946,074
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 (mitochondrial) ISO
IMP
(MGI:6148506|PMID:29323231) MGI
UniProt
PMID:29323231 GO_REF:0000096 MGI:4834177 MGI:6148506 NCBI chr10:127,517,123...127,522,444
Ensembl chr10:127,517,123...127,522,444
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 IMP (MGI:5440106|PMID:23021218) UniProt PMID:23021218 MGI:5440106 NCBI chr 5:114,622,152...114,658,435
Ensembl chr 5:114,622,152...114,658,421
JBrowse link
G Vcp valosin containing protein ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:42,979,964...43,000,507
Ensembl chr 4:42,979,963...43,000,507
JBrowse link
tricarboxylic acid cycle term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 4933405O20Rik RIKEN cDNA 4933405O20 gene IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:50,599,190...50,600,528
Ensembl chr 7:50,599,190...50,600,530
JBrowse link
G Aco1 aconitase 1 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 4:40,143,265...40,199,009
Ensembl chr 4:40,143,081...40,198,338
JBrowse link
G Aco2 aconitase 2, mitochondrial ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000008 GO_REF:0000096 MGI:2154458 MGI:4417868 MGI:6201960 NCBI chr15:81,872,463...81,915,137
Ensembl chr15:81,872,309...81,915,133
JBrowse link
G Cs citrate synthase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr10:128,337,727...128,362,482
Ensembl chr10:128,337,734...128,362,479
JBrowse link
G Csl citrate synthase like IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:99,757,705...99,759,658
Ensembl chr10:99,757,706...99,759,658
JBrowse link
G Dhtkd1 dehydrogenase E1 and transketolase domain containing 1 IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:5,896,219...5,942,829
Ensembl chr 2:5,896,115...5,942,792
JBrowse link
G Dlat dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex) IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr 9:50,634,633...50,659,780
Ensembl chr 9:50,634,633...50,659,780
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:85,110,822...85,134,091
Ensembl chr12:85,110,833...85,134,845
JBrowse link
G Fh1 fumarate hydratase 1 IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 1:175,601,378...175,625,635
Ensembl chr 1:175,600,374...175,625,635
JBrowse link
G Idh1 isocitrate dehydrogenase 1 (NADP+), soluble IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr 1:65,158,616...65,186,479
Ensembl chr 1:65,158,616...65,186,500
JBrowse link
G Idh2 isocitrate dehydrogenase 2 (NADP+), mitochondrial IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr 7:80,094,845...80,118,608
Ensembl chr 7:80,094,846...80,115,392
JBrowse link
G Idh3a isocitrate dehydrogenase 3 (NAD+) alpha ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 9:54,586,511...54,604,662
Ensembl chr 9:54,586,334...54,604,661
JBrowse link
G Idh3b isocitrate dehydrogenase 3 (NAD+) beta ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 2:130,279,309...130,284,451
Ensembl chr 2:130,279,309...130,284,547
JBrowse link
G Idh3g isocitrate dehydrogenase 3 (NAD+), gamma ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr  X:73,778,963...73,786,897
Ensembl chr  X:73,778,963...73,786,897
JBrowse link
G Ireb2 iron responsive element binding protein 2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:54,862,658...54,912,534
Ensembl chr 9:54,863,789...54,912,530
JBrowse link
G Mdh1 malate dehydrogenase 1, NAD (soluble) IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:21,556,692...21,571,934
Ensembl chr11:21,556,692...21,572,367
JBrowse link
G Mdh1b malate dehydrogenase 1B, NAD (soluble) IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:63,698,827...63,730,318
Ensembl chr 1:63,698,819...63,730,318
JBrowse link
G Mdh2 malate dehydrogenase 2, NAD (mitochondrial) IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 5:135,778,649...135,790,386
Ensembl chr 5:135,778,480...135,790,398
JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase core subunit S4 TAS (MGI:6277626|PMID:30391276) MGI PMID:30391276 MGI:6277626 NCBI chr13:114,287,795...114,388,094
Ensembl chr13:114,287,795...114,388,258
JBrowse link
G Ogdh oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr11:6,291,597...6,359,094
Ensembl chr11:6,291,633...6,356,642
JBrowse link
G Ogdhl oxoglutarate dehydrogenase-like IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:32,321,982...32,348,151
Ensembl chr14:32,322,019...32,348,151
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 alpha 1 IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr  X:160,122,219...160,138,430
Ensembl chr  X:160,122,209...160,138,413
JBrowse link
G Pdha2 pyruvate dehydrogenase E1 alpha 2 IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr 3:141,210,004...141,212,355
Ensembl chr 3:141,210,004...141,212,355
JBrowse link
G Pdhb pyruvate dehydrogenase (lipoamide) beta IEA UniProt GO_REF:0000004 MGI:1354194 NCBI chr14:8,165,991...8,173,303
Ensembl chr14:8,165,996...8,173,025
JBrowse link
G Sdha succinate dehydrogenase complex, subunit A, flavoprotein (Fp) IEA UniProt GO_REF:0000002 GO_REF:0000004 MGI:1354194 MGI:2152098 NCBI chr13:74,322,255...74,350,240
Ensembl chr13:74,322,254...74,350,280
JBrowse link
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:10,500,512...10,525,209
Ensembl chr19:10,500,534...10,526,142
JBrowse link
G Sdhb succinate dehydrogenase complex, subunit B, iron sulfur (Ip) IEA UniProt GO_REF:0000002 GO_REF:0000004 MGI:1354194 MGI:2152098 NCBI chr 4:140,961,271...140,979,198
Ensembl chr 4:140,961,203...140,979,193
JBrowse link
G Sdhc succinate dehydrogenase complex, subunit C, integral membrane protein IEA UniProt GO_REF:0000002 GO_REF:0000004 MGI:1354194 MGI:2152098 NCBI chr 1:171,129,157...171,150,640
Ensembl chr 1:171,127,165...171,150,603
JBrowse link
G Sdhd succinate dehydrogenase complex, subunit D, integral membrane protein ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 9:50,596,340...50,603,849
Ensembl chr 9:50,596,357...50,603,812
JBrowse link
G Sucla2 succinate-Coenzyme A ligase, ADP-forming, beta subunit IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr14:73,552,786...73,596,144
Ensembl chr14:73,525,319...73,596,142
JBrowse link
G Suclg1 succinate-CoA ligase, GDP-forming, alpha subunit ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 6:73,248,505...73,276,907
Ensembl chr 6:73,248,382...73,276,911
JBrowse link
G Suclg2 succinate-Coenzyme A ligase, GDP-forming, beta subunit ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 6:95,473,009...95,718,858
Ensembl chr 6:95,473,009...95,718,800
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23351
    cellular process 17478
      cellular metabolic process 10044
        generation of precursor metabolites and energy 417
          energy derivation by oxidation of organic compounds 254
            cellular respiration 163
              aerobic respiration 76
                aerobic electron transport chain + 12
                aerobic respiration, using ammonia as electron donor 0
                aerobic respiration, using arsenite as electron donor 0
                aerobic respiration, using carbon monoxide as electron donor 0
                aerobic respiration, using ferrous ions as electron donor 0
                aerobic respiration, using hydrogen as electron donor 0
                aerobic respiration, using nitrite as electron donor 0
                aerobic respiration, using sulfur or sulfate as electron donor 0
                alternative respiration 0
                regulation of aerobic respiration 10
                tricarboxylic acid cycle + 32
paths to the root