Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:aerobic respiration
go back to main search page
Accession:GO:0009060 term browser browse the term
Definition:The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
Synonyms:xref: MetaCyc:PWY-3781;   Wikipedia:Cellular_respiration#Aerobic_respiration


show annotations for term's descendants           Sort by:
 
aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADSL adenylosuccinate lyase ISO RGD PMID:3777158 RGD:1598765 NCBI chr10:24,813,854...24,832,115 JBrowse link
G ATP5F1D ATP synthase F1 subunit delta IEA Ensembl GO_REF:0000107 NCBI chr20:57,547,575...57,550,110
Ensembl chr20:57,547,371...57,549,722
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chr10:116,993...120,244 JBrowse link
G CAT catalase IEA Ensembl GO_REF:0000107 NCBI chr18:33,383,005...33,422,447
Ensembl chr18:33,383,005...33,422,447
JBrowse link
G COX10 cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 IEA Ensembl GO_REF:0000107 NCBI chr 5:37,853,495...37,982,228
Ensembl chr 5:37,852,875...37,982,243
JBrowse link
G FXN frataxin IEA Ensembl GO_REF:0000107 NCBI chr 1:88,288,566...88,311,228
Ensembl chr 1:88,288,566...88,311,228
JBrowse link
G MDH2 malate dehydrogenase 2 ISO (PMID:27989324) UniProtKB PMID:27989324 NCBI chr 6:7,389,266...7,405,311 JBrowse link
G MT-CO1 mitochondrially encoded cytochrome c oxidase I IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:5,349...6,893
Ensembl chr MT:5,349...6,893
JBrowse link
G MT-CO3 mitochondrially encoded cytochrome c oxidase III IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:8,644...9,427
Ensembl chr MT:8,644...9,427
JBrowse link
G MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:2,747...3,702
Ensembl chr MT:2,747...3,703
JBrowse link
G MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:10,201...11,578
Ensembl chr MT:10,201...11,578
JBrowse link
G MTFR1 mitochondrial fission regulator 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr29:15,314,955...15,390,776
Ensembl chr29:15,315,069...15,389,458
JBrowse link
G MTFR1L mitochondrial fission regulator 1 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:74,116,837...74,133,414
Ensembl chr 2:74,117,649...74,132,758
JBrowse link
G MTFR2 mitochondrial fission regulator 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:28,830,818...28,844,875
Ensembl chr 1:28,830,867...28,844,710
JBrowse link
G NDUFS7 NADH:ubiquinone oxidoreductase core subunit S7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:57,443,264...57,448,892
Ensembl chr20:57,443,258...57,448,825
JBrowse link
G NDUFS8 NADH:ubiquinone oxidoreductase core subunit S8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:49,796,558...49,800,805
Ensembl chr18:49,796,560...49,799,979
JBrowse link
G OXA1L OXA1L mitochondrial inner membrane protein ISO (PMID:7991568) UniProtKB PMID:7991568 NCBI chr 8:3,108,669...3,132,337
Ensembl chr 8:3,108,757...3,132,334
JBrowse link
G PANK2 pantothenate kinase 2 ISO (MGI:5461110|PMID:22983956) MGI PMID:22983956 MGI:5461110 NCBI chr24:17,461,406...17,475,248
Ensembl chr24:17,463,447...17,490,360
JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:81,158,291...81,190,110
Ensembl chr 2:81,158,291...81,190,109
JBrowse link
G SIRT3 sirtuin 3 IEA Ensembl GO_REF:0000107 NCBI chr18:25,369,183...25,388,126
Ensembl chr18:25,369,382...25,388,118
JBrowse link
G UCN urocortin ISO negative regulation RGD PMID:11597609 RGD:5508185 NCBI chr17:21,278,512...21,280,404
Ensembl chr17:21,278,932...21,279,312
JBrowse link
G UQCRH ubiquinol-cytochrome c reductase hinge protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:14,082,954...14,092,690 JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFG1L AFG1 like ATPase IEA Ensembl GO_REF:0000107 NCBI chr12:65,312,922...65,516,207
Ensembl chr12:65,313,140...65,515,992
JBrowse link
G COX4I1 cytochrome c oxidase subunit 4I1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:66,883,730...66,891,734
Ensembl chr 5:66,883,732...66,891,500
JBrowse link
G COX4I2 cytochrome c oxidase subunit 4I2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:21,122,033...21,128,368
Ensembl chr24:21,120,213...21,128,320
JBrowse link
G COX5B cytochrome c oxidase subunit 5B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:44,979,654...44,991,620
Ensembl chr10:44,979,654...44,991,703
JBrowse link
G CYCS cytochrome c, somatic IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:38,579,446...38,581,983
Ensembl chr14:38,579,446...38,581,983
JBrowse link
G GATC glutamyl-tRNA amidotransferase subunit C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:16,352,826...16,362,298 JBrowse link
G MT-CO1 mitochondrially encoded cytochrome c oxidase I IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:5,349...6,893
Ensembl chr MT:5,349...6,893
JBrowse link
G MT-CO3 mitochondrially encoded cytochrome c oxidase III IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr MT:8,644...9,427
Ensembl chr MT:8,644...9,427
JBrowse link
regulation of aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 IEA Ensembl GO_REF:0000107 NCBI chr18:50,787,353...50,801,036
Ensembl chr18:50,787,353...50,801,197
JBrowse link
G AKT1 AKT serine/threonine kinase 1 ISO RGD PMID:24601882 RGD:39128160 NCBI chr 8:72,317,399...72,335,686
Ensembl chr 8:72,317,869...72,335,193
JBrowse link
G BNIP3 BCL2 interacting protein 3 ISO (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chr28:40,037,681...40,050,499
Ensembl chr28:40,038,643...40,049,797
JBrowse link
G CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:64,432,291...64,518,905
Ensembl chr 5:64,431,843...64,519,528
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha IEA Ensembl GO_REF:0000107 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G IDE insulin degrading enzyme IEA Ensembl GO_REF:0000107 NCBI chr28:6,844,480...6,967,713
Ensembl chr28:6,844,055...6,967,713
JBrowse link
G LOC100856786 glycolipid transfer protein IEA Ensembl GO_REF:0000107 NCBI chr26:17,262,008...17,283,735
Ensembl chr26:17,262,100...17,330,165
JBrowse link
G NOP53 NOP53 ribosome biogenesis factor IEA Ensembl GO_REF:0000107 NCBI chr 1:108,307,039...108,315,732
Ensembl chr 1:108,307,042...108,316,495
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IEA Ensembl GO_REF:0000107 NCBI chr10:1,357,347...1,362,511
Ensembl chr10:1,356,706...1,362,305
JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 IEA Ensembl GO_REF:0000107 NCBI chr26:17,293,334...17,330,156
Ensembl chr26:17,262,100...17,330,165
JBrowse link
G VCP valosin containing protein IEA Ensembl GO_REF:0000107 NCBI chr11:51,636,986...51,651,749
Ensembl chr11:51,637,411...51,651,714
JBrowse link
tricarboxylic acid cycle term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACO1 aconitase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:49,699,072...49,758,783
Ensembl chr11:49,699,109...49,923,257
JBrowse link
G ACO2 aconitase 2 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr10:23,742,284...23,798,580
Ensembl chr10:23,742,333...23,798,498
JBrowse link
G CS citrate synthase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr10:584,000...611,351
Ensembl chr10:584,904...611,436
JBrowse link
G DHTKD1 dehydrogenase E1 and transketolase domain containing 1 IEA InterPro GO_REF:0000002 NCBI chr 2:24,298,323...24,349,848
Ensembl chr 2:24,299,789...24,349,899
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase IEA UniProt GO_REF:0000041 NCBI chr 8:48,003,730...48,025,001
Ensembl chr 8:48,002,211...48,024,999
JBrowse link
G FH fumarate hydratase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412
JBrowse link
G IDH1 isocitrate dehydrogenase (NADP(+)) 1 IEA UniProt GO_REF:0000043 NCBI chr37:16,512,027...16,531,269
Ensembl chr37:16,512,770...16,531,219
JBrowse link
G IDH2 isocitrate dehydrogenase (NADP(+)) 2 IEA UniProt GO_REF:0000043 NCBI chr 3:53,070,462...53,077,566
Ensembl chr 3:53,070,695...53,087,496
JBrowse link
G IDH3A isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 3:58,301,982...58,318,925
Ensembl chr 3:58,302,001...58,318,248
JBrowse link
G IDH3B isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr24:18,556,437...18,561,399 JBrowse link
G IDH3G isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr  X:121,599,368...121,608,707
Ensembl chr  X:121,599,368...121,608,643
JBrowse link
G IREB2 iron responsive element binding protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:38,398,445...38,441,128
Ensembl chr13:38,400,591...38,441,015
JBrowse link
G LOC608210 succinate dehydrogenase complex, subunit B, iron sulfur (Ip) pseudogene IEA UniProt GO_REF:0000041 NCBI chr14:5,358,874...5,359,861 JBrowse link
G MDH1 malate dehydrogenase 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000043 NCBI chr10:63,316,818...63,334,556
Ensembl chr10:63,316,831...63,361,735
JBrowse link
G MDH2 malate dehydrogenase 2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
UniProt
PMID:21873635 GO_REF:0000002 GO_REF:0000043 NCBI chr 6:7,389,266...7,405,311 JBrowse link
G OGDH oxoglutarate dehydrogenase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002
G OGDHL oxoglutarate dehydrogenase L IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr28:1,573,653...1,600,264
Ensembl chr28:1,573,793...1,596,285
JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 IEA UniProt GO_REF:0000043 NCBI chr  X:15,338,364...15,354,011
Ensembl chr  X:15,338,202...15,387,458
JBrowse link
G SDHA succinate dehydrogenase complex flavoprotein subunit A IEA UniProt GO_REF:0000041 NCBI chr34:11,935,684...11,965,094
Ensembl chr34:11,935,941...11,965,189
JBrowse link
G SDHAF2 succinate dehydrogenase complex assembly factor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:54,970,987...54,986,676
Ensembl chr18:54,971,658...54,987,394
JBrowse link
G SDHB succinate dehydrogenase complex iron sulfur subunit B IEA UniProtKB GO_REF:0000041 NCBI chr 2:81,158,291...81,190,110
Ensembl chr 2:81,158,291...81,190,109
JBrowse link
G SDHC succinate dehydrogenase complex subunit C IEA InterPro GO_REF:0000002 NCBI chr38:21,162,850...21,200,429
Ensembl chr38:21,162,421...21,200,333
JBrowse link
G SDHD succinate dehydrogenase complex subunit D IEA UniProt GO_REF:0000043 NCBI chr 5:21,030,295...21,041,125 JBrowse link
G SUCLA2 succinate-CoA ligase ADP-forming subunit beta IEA UniProtKB GO_REF:0000041 NCBI chr22:3,440,908...3,478,683
Ensembl chr22:3,440,923...3,478,683
JBrowse link
G SUCLG1 succinate-CoA ligase GDP/ADP-forming subunit alpha IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr17:40,392,969...40,424,875
Ensembl chr17:40,393,178...40,424,711
JBrowse link
G SUCLG2 succinate-CoA ligase GDP-forming subunit beta IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr20:23,915,149...24,167,740
Ensembl chr20:23,895,802...24,182,869
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16106
    cellular process 15433
      cellular metabolic process 9542
        generation of precursor metabolites and energy 422
          energy derivation by oxidation of organic compounds 239
            cellular respiration 150
              aerobic respiration 63
                aerobic electron transport chain + 8
                aerobic respiration, using ammonia as electron donor 0
                aerobic respiration, using arsenite as electron donor 0
                aerobic respiration, using carbon monoxide as electron donor 0
                aerobic respiration, using ferrous ions as electron donor 0
                aerobic respiration, using hydrogen as electron donor 0
                aerobic respiration, using nitrite as electron donor 0
                aerobic respiration, using sulfur or sulfate as electron donor 0
                alternative respiration 0
                regulation of aerobic respiration 11
                tricarboxylic acid cycle + 26
paths to the root