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ONTOLOGY REPORT - ANNOTATIONS

Term:aerobic respiration
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Accession:GO:0009060 term browser browse the term
Definition:The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
Synonyms:xref: MetaCyc:PWY-3781;   Wikipedia:Cellular_respiration#Aerobic_respiration

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aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase ISO RGD PMID:3777158 RGD:1598765 NCBI chrNW_004955413:26,067,463...26,084,669
Ensembl chrNW_004955413:26,067,516...26,088,527 		JBrowse link
G Atp5f1d ATP synthase F1 subunit delta ISO (PMID:29478781) UniProt PMID:29478781 NCBI chrNW_004955495:6,664,394...6,666,693
Ensembl chrNW_004955495:6,664,394...6,666,693 		JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chrNW_004955458:3,352,442...3,356,224
Ensembl chrNW_004955458:3,352,012...3,365,080 		JBrowse link
G Cat catalase ISO (MGI:3050704|PMID:15178682) MGI PMID:15178682 MGI:3050704 NCBI chrNW_004955422:11,783,973...11,826,970
Ensembl chrNW_004955422:11,781,835...11,827,464 		JBrowse link
G Fxn frataxin ISO (MGI:2158372|PMID:9405681)
(MGI:3611157|PMID:16278235)		 MGI PMID:9405681 PMID:16278235 MGI:2158372 MGI:3611157 NCBI chrNW_004955434:3,983,225...4,008,324
Ensembl chrNW_004955434:3,980,653...4,008,761 		JBrowse link
G LOC102022268 protoheme IX farnesyltransferase, mitochondrial ISO (MGI:3640032|PMID:16782876) MGI PMID:16782876 MGI:3640032 NCBI chrNW_004955467:3,294,200...3,415,778
Ensembl chrNW_004955467:3,292,018...3,415,778 		JBrowse link
G Mdh2 malate dehydrogenase 2 ISO (PMID:27989324) UniProtKB PMID:27989324 NCBI chrNW_004955456:14,819,406...14,833,547
Ensembl chrNW_004955456:14,819,406...14,837,142 		JBrowse link
G Mtfr1 mitochondrial fission regulator 1 ISO (MGI:5320275|PMID:20568109) UniProt PMID:20568109 MGI:5320275 NCBI chrNW_004955444:13,481,270...13,520,673 JBrowse link
G Mtfr2 mitochondrial fission regulator 2 ISO (MGI:5320275|PMID:20568109) UniProt PMID:20568109 MGI:5320275 NCBI chrNW_004955439:643,289...662,921
Ensembl chrNW_004955439:646,432...663,033 		JBrowse link
G Oxa1l OXA1L mitochondrial inner membrane protein ISO (PMID:7991568) UniProtKB PMID:7991568 NCBI chrNW_004955409:37,513,925...37,519,250
Ensembl chrNW_004955409:37,514,177...37,519,376 		JBrowse link
G Pank2 pantothenate kinase 2 ISO (MGI:5461110|PMID:22983956) MGI PMID:22983956 MGI:5461110 NCBI chrNW_004955415:14,722,951...14,752,493
Ensembl chrNW_004955415:14,723,087...14,751,423 		JBrowse link
G Sirt3 sirtuin 3 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chrNW_004955476:11,794,951...11,826,244 JBrowse link
G Ucn urocortin ISO negative regulation RGD PMID:11597609 RGD:5508185 NCBI chrNW_004955469:9,277,637...9,278,641
Ensembl chrNW_004955469:9,277,637...9,278,641 		JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afg1l AFG1 like ATPase ISO (PMID:27323408) UniProtKB PMID:27323408 NCBI chrNW_004955411:33,386,568...33,617,721
Ensembl chrNW_004955411:33,386,098...33,617,721 		JBrowse link
G LOC102023786 cytochrome c, somatic ISO RGD PMID:10980192 RGD:2300408 NCBI chrNW_004955410:27,086,405...27,089,255 JBrowse link
regulation of aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 ISO (MGI:3759354|PMID:17828264) UniProt PMID:17828264 MGI:3759354 NCBI chrNW_004955422:18,799,372...18,812,458
Ensembl chrNW_004955422:18,799,372...18,812,711 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO RGD PMID:24601882 RGD:39128160 NCBI chrNW_004955538:3,208,711...3,224,386
Ensembl chrNW_004955538:3,208,710...3,229,904 		JBrowse link
G Bnip3 BCL2 interacting protein 3 ISO (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chrNW_004955477:9,621,812...9,630,406
Ensembl chrNW_004955477:9,621,812...9,638,099 		JBrowse link
G Cbfa2t3 CBFA2/RUNX1 partner transcriptional co-repressor 3 ISO (PMID:23840896) UniProtKB PMID:23840896 NCBI chrNW_004955541:2,724,369...2,777,540
Ensembl chrNW_004955541:2,724,312...2,777,592 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Ide insulin degrading enzyme ISO (PMID:23525105) ARUK-UCL PMID:23525105 NCBI chrNW_004955425:819,461...926,440
Ensembl chrNW_004955425:847,615...926,318 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor ISO (PMID:24556985) UniProtKB PMID:24556985 NCBI chrNW_004955574:1,505,997...1,514,680
Ensembl chrNW_004955574:1,506,022...1,517,130 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 ISO (PMID:29364879), (PMID:29452640)
(MGI:6148506|PMID:29323231)		 UniProtKB
UniProt		 PMID:29323231 PMID:29364879 PMID:29452640 MGI:6148506 NCBI chrNW_004955458:4,957,614...4,962,691
Ensembl chrNW_004955458:4,957,602...4,962,691 		JBrowse link
G Trpv4 transient receptor potential cation channel subfamily V member 4 ISO (MGI:5440106|PMID:23021218) UniProt PMID:23021218 MGI:5440106 NCBI chrNW_004955455:8,744,865...8,781,644
Ensembl chrNW_004955455:8,744,176...8,783,741 		JBrowse link
G Vcp valosin containing protein ISO (PMID:23498975) ParkinsonsUK-UCL PMID:23498975 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076 		JBrowse link
tricarboxylic acid cycle term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aco2 aconitase 2 ISO (PMID:9630632) RGD
MGI		 PMID:9630632 PMID:9712727 RGD:2306877 NCBI chrNW_004955413:27,027,341...27,065,227
Ensembl chrNW_004955413:27,027,341...27,065,227 		JBrowse link
G Cs citrate synthase ISO RGD PMID:938457 PMID:9712727 RGD:2306828 RGD:2306877 NCBI chrNW_004955458:3,881,798...3,913,044
Ensembl chrNW_004955458:3,881,798...3,893,401 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISO (PMID:30929736) UniProt PMID:30929736 NCBI chrNW_004955523:660,413...680,878
Ensembl chrNW_004955523:661,738...680,802 		JBrowse link
G Fh fumarate hydratase ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004955406:10,535,801...10,558,649
Ensembl chrNW_004955406:10,535,323...10,561,627 		JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO (PMID:2252888) UniProt
RGD		 PMID:938457 PMID:2252888 RGD:2306828 NCBI chrNW_004955450:685,905...703,593
Ensembl chrNW_004955450:685,905...703,586 		JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004955415:13,642,804...13,649,023
Ensembl chrNW_004955415:13,643,168...13,649,463 		JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004955580:500,712...507,512
Ensembl chrNW_004955580:500,825...507,608 		JBrowse link
G Mdh2 malate dehydrogenase 2 ISO RGD PMID:938457 RGD:2306828 NCBI chrNW_004955456:14,819,406...14,833,547
Ensembl chrNW_004955456:14,819,406...14,837,142 		JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO RGD PMID:9712727 RGD:2306877 NCBI chrNW_004955456:7,416,343...7,484,889
Ensembl chrNW_004955456:7,415,589...7,485,515 		JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO (PMID:9533030) UniProtKB PMID:9533030 NCBI chrNW_004955412:13,768,501...13,778,944 JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming beta subunit ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004955431:1,678,720...1,737,234
Ensembl chrNW_004955431:1,676,362...1,737,489 		JBrowse link
G Suclg1 succinate-CoA ligase alpha subunit ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004955424:2,810,557...2,838,827
Ensembl chrNW_004955424:2,810,557...2,842,036 		JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming beta subunit ISO RGD PMID:17403370 RGD:2306915 NCBI chrNW_004955421:20,089,471...20,350,334
Ensembl chrNW_004955421:20,089,237...20,350,843 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11920
    cellular process 11136
      cellular metabolic process 6946
        generation of precursor metabolites and energy 309
          energy derivation by oxidation of organic compounds 186
            cellular respiration 107
              aerobic respiration 37
                aerobic electron transport chain + 2
                aerobic respiration, using ammonia as electron donor 0
                aerobic respiration, using arsenite as electron donor 0
                aerobic respiration, using carbon monoxide as electron donor 0
                aerobic respiration, using ferrous ions as electron donor 0
                aerobic respiration, using hydrogen as electron donor 0
                aerobic respiration, using nitrite as electron donor 0
                aerobic respiration, using sulfur or sulfate as electron donor 0
                alternative respiration 0
                regulation of aerobic respiration 10
                tricarboxylic acid cycle + 13
paths to the root