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ONTOLOGY REPORT - ANNOTATIONS


Term:aerobic respiration
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Accession:GO:0009060 term browser browse the term
Definition:The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.
Synonyms:xref: MetaCyc:PWY-3781;   Wikipedia:Cellular_respiration#Aerobic_respiration


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aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADSL adenylosuccinate lyase ISO RGD PMID:3777158 RGD:1598765 NCBI chr22:21,249,920...21,271,749
Ensembl chr22:39,068,764...39,389,221
JBrowse link
G ATP5F1D ATP synthase F1 subunit delta ISO (PMID:29478781) UniProt PMID:29478781
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chr12:33,191,882...33,195,566
Ensembl chr12:33,911,309...33,920,506
JBrowse link
G CAT catalase ISO (MGI:3050704|PMID:15178682) MGI PMID:15178682 MGI:3050704 NCBI chr11:34,413,253...34,446,831
Ensembl chr11:34,289,603...34,323,160
JBrowse link
G FXN frataxin ISO (MGI:3611157|PMID:16278235)
(MGI:2158372|PMID:9405681)
MGI PMID:9405681 PMID:16278235 MGI:2158372 MGI:3611157 NCBI chr 9:55,690,483...55,754,755
Ensembl chr 9:67,800,579...67,866,031
JBrowse link
G LOC100980340 protoheme IX farnesyltransferase, mitochondrial ISO (MGI:3640032|PMID:16782876) MGI PMID:16782876 MGI:3640032 NCBI chr17:37,443,319...37,582,436
Ensembl chr17:42,091,452...42,274,762
JBrowse link
G MDH2 malate dehydrogenase 2 ISO (PMID:27989324) UniProtKB PMID:27989324 NCBI chr 7:67,953,759...67,973,270
Ensembl chr 7:82,497,800...82,516,526
JBrowse link
G MTFR1 mitochondrial fission regulator 1 ISO (MGI:5320275|PMID:20568109) UniProt PMID:20568109 MGI:5320275 NCBI chr 8:62,184,249...62,265,239
Ensembl chr 8:63,853,944...63,933,929
JBrowse link
G MTFR2 mitochondrial fission regulator 2 ISO (MGI:5320275|PMID:20568109) UniProt PMID:20568109 MGI:5320275 NCBI chr 6:133,995,679...134,014,947
Ensembl chr 6:138,084,908...138,104,740
JBrowse link
G OXA1L OXA1L mitochondrial inner membrane protein ISO (PMID:7991568) UniProtKB PMID:7991568 NCBI chr14:3,584,220...3,589,360
Ensembl chr14:21,683,983...21,689,101
JBrowse link
G PANK2 pantothenate kinase 2 ISO (MGI:5461110|PMID:22983956) MGI PMID:22983956 MGI:5461110 NCBI chr20:3,924,054...3,959,393
Ensembl chr20:3,723,211...3,757,748
JBrowse link
G SIRT3 sirtuin 3 ISO (PMID:22309213) UniProtKB PMID:22309213 NCBI chr11:210,052...233,969
Ensembl chr11:255,191...278,732
JBrowse link
G UCN urocortin ISO negative regulation RGD PMID:11597609 RGD:5508185 NCBI chr2A:27,309,458...27,311,268
Ensembl chr2A:27,397,295...27,397,669
JBrowse link
mitochondrial electron transport, cytochrome c to oxygen term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFG1L AFG1 like ATPase ISO (PMID:27323408) UniProtKB PMID:27323408 NCBI chr 6:106,097,263...106,326,453
Ensembl chr 6:109,956,916...110,367,328
JBrowse link
G LOC100986481 cytochrome c ISO RGD PMID:10980192 RGD:2300408 NCBI chr 7:25,784,900...25,791,598
Ensembl chr 7:25,396,013...25,398,549
JBrowse link
regulation of aerobic respiration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 ISO (MGI:3759354|PMID:17828264) UniProt PMID:17828264 MGI:3759354 NCBI chr11:61,905,722...61,922,227
Ensembl chr11:65,228,713...65,245,429
JBrowse link
G AKT1 AKT serine/threonine kinase 1 ISO RGD PMID:24601882 RGD:39128160 NCBI chr14:85,417,229...85,444,722
Ensembl chr14:105,208,128...105,236,756
JBrowse link
G BNIP3 BCL2 interacting protein 3 ISO (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chr10:128,671,663...128,685,952
Ensembl chr10:132,858,211...132,871,634
JBrowse link
G CBFA2T3 CBFA2/RUNX1 partner transcriptional co-repressor 3 ISO (PMID:23840896) UniProtKB PMID:23840896 NCBI chr16:69,592,293...69,662,321
Ensembl chr16:89,246,545...89,347,435
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO (MGI:3796473|PMID:18281291) ParkinsonsUK-UCL PMID:18281291 MGI:3796473 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G IDE insulin degrading enzyme ISO (PMID:23525105) ARUK-UCL PMID:23525105 NCBI chr10:89,196,295...89,320,223
Ensembl chr10:92,716,540...92,833,353
JBrowse link
G NOP53 NOP53 ribosome biogenesis factor ISO (PMID:24556985) UniProtKB PMID:24556985 NCBI chr19:44,739,739...44,751,303 JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 ISO (PMID:29364879), (PMID:29452640)
(MGI:6148506|PMID:29323231)
UniProtKB
UniProt
PMID:29323231 PMID:29364879 PMID:29452640 MGI:6148506 NCBI chr12:31,692,451...31,697,727
Ensembl chr12:31,944,785...31,950,138
JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 ISO (MGI:5440106|PMID:23021218) UniProt PMID:23021218 MGI:5440106 NCBI chr12:107,359,005...107,409,359
Ensembl chr12:110,754,238...110,786,182
JBrowse link
G VCP valosin containing protein ISO (PMID:23498975) ParkinsonsUK-UCL PMID:23498975 NCBI chr 9:34,907,147...34,923,227
Ensembl chr 9:35,712,937...35,729,588
JBrowse link
tricarboxylic acid cycle term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACO2 aconitase 2 ISO (PMID:9630632) RGD
MGI
PMID:9630632 PMID:9712727 RGD:2306877 NCBI chr22:22,363,178...22,423,041
Ensembl chr22:40,450,276...40,510,200
JBrowse link
G CS citrate synthase ISO RGD PMID:938457 PMID:9712727 RGD:2306828 RGD:2306877 NCBI chr12:32,614,982...32,643,719
Ensembl chr12:32,867,225...32,895,854
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase ISO (PMID:30929736) UniProt PMID:30929736 NCBI chr14:55,433,358...55,455,876
Ensembl chr14:74,278,128...74,300,133
JBrowse link
G FH fumarate hydratase ISO RGD PMID:938457 RGD:2306828 NCBI chr 1:217,059,847...217,081,795
Ensembl chr 1:222,041,142...222,064,212
JBrowse link
G IDH3A isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ISO (PMID:2252888) UniProt
RGD
PMID:938457 PMID:2252888 RGD:2306828 NCBI chr15:57,078,588...57,099,934
Ensembl chr15:76,043,311...76,064,634
JBrowse link
G IDH3B isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ISO RGD PMID:938457 RGD:2306828 NCBI chr20:2,766,598...2,772,571
Ensembl chr20:2,529,510...2,535,570
JBrowse link
G IDH3G isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ISO RGD PMID:938457 RGD:2306828 NCBI chr  X:143,336,460...143,345,274
Ensembl chr  X:153,222,309...153,231,135
JBrowse link
G MDH2 malate dehydrogenase 2 ISO RGD PMID:938457 RGD:2306828 NCBI chr 7:67,953,759...67,973,270
Ensembl chr 7:82,497,800...82,516,526
JBrowse link
G OGDH oxoglutarate dehydrogenase ISO RGD PMID:9712727 RGD:2306877 NCBI chr 7:45,321,559...45,422,515
Ensembl chr 7:45,409,148...45,491,636
JBrowse link
G SDHD succinate dehydrogenase complex subunit D ISO (PMID:9533030) UniProtKB PMID:9533030 NCBI chr11:106,973,256...106,982,237
Ensembl chr11:110,817,016...110,896,829
JBrowse link
G SUCLA2 succinate-CoA ligase ADP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chr13:29,095,062...29,189,618
Ensembl chr13:47,797,472...47,856,138
JBrowse link
G SUCLG1 succinate-CoA ligase GDP/ADP-forming subunit alpha ISO RGD PMID:17403370 RGD:2306915 NCBI chr2A:84,476,814...84,512,920
Ensembl chr2A:86,035,723...86,066,622
JBrowse link
G SUCLG2 succinate-CoA ligase GDP-forming subunit beta ISO RGD PMID:17403370 RGD:2306915 NCBI chr 3:67,277,348...67,563,181 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12593
    cellular process 11709
      cellular metabolic process 7244
        generation of precursor metabolites and energy 316
          energy derivation by oxidation of organic compounds 188
            cellular respiration 107
              aerobic respiration 37
                aerobic electron transport chain + 2
                aerobic respiration, using ammonia as electron donor 0
                aerobic respiration, using arsenite as electron donor 0
                aerobic respiration, using carbon monoxide as electron donor 0
                aerobic respiration, using ferrous ions as electron donor 0
                aerobic respiration, using hydrogen as electron donor 0
                aerobic respiration, using nitrite as electron donor 0
                aerobic respiration, using sulfur or sulfate as electron donor 0
                alternative respiration 0
                regulation of aerobic respiration 10
                tricarboxylic acid cycle + 13
paths to the root