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ONTOLOGY REPORT - ANNOTATIONS

Term:amino acid biosynthetic process
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Accession:GO:0008652 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid anabolism;   amino acid biosynthesis;   amino acid formation;   amino acid synthesis;   cellular amino acid biosynthetic process
 xref: Wikipedia:Amino_acid_synthesis


show annotations for term's descendants           Sort by:
amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 involved_in IEA UniProt GO_REF:0000117 NCBI chr10:95,605,941...95,656,711
Ensembl chr10:95,605,941...95,656,711 		JBrowse link
G BCAT1 branched chain amino acid transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:24,810,024...24,949,340
Ensembl chr12:24,810,024...24,949,101 		JBrowse link
G BCAT2 branched chain amino acid transaminase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:48,795,064...48,811,029
Ensembl chr19:48,795,062...48,811,029 		JBrowse link
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943 		JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:99,396,870...99,430,624
Ensembl chr10:99,396,870...99,430,624 		JBrowse link
G HAO1 hydroxyacid oxidase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:7,882,985...7,940,458
Ensembl chr20:7,882,985...7,940,458 		JBrowse link
G OTC ornithine transcarbamylase involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:38,327,684...38,422,928
Ensembl chr  X:38,352,586...38,421,446 		JBrowse link
G PAH phenylalanine hydroxylase involved_in TAS (PMID:3856322) PINC PMID:3856322 NCBI chr12:102,836,889...102,958,441
Ensembl chr12:102,836,889...102,958,410 		JBrowse link
G PHGDH phosphoglycerate dehydrogenase involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:119,711,934...119,744,215
Ensembl chr 1:119,648,411...119,744,218 		JBrowse link
G PYCR1 pyrroline-5-carboxylate reductase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:81,932,391...81,937,300
Ensembl chr17:81,932,384...81,942,412 		JBrowse link
G PYCR2 pyrroline-5-carboxylate reductase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:225,919,878...225,924,250
Ensembl chr 1:225,919,877...225,924,340 		JBrowse link
'de novo' L-methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHMT betaine--homocysteine S-methyltransferase involved_in IMP (PMID:10529246) UniProt PMID:10529246 NCBI chr 5:79,111,809...79,132,288
Ensembl chr 5:79,111,809...79,132,288 		JBrowse link
arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC068533.4 novel protein involved_in IEA UniProt GO_REF:0000041 Ensembl chr 7:66,087,761...66,152,277 JBrowse link
G ASL argininosuccinate lyase involved_in IEA
IDA		 (PMID:11747432), (PMID:11747433) UniProt
Ensembl		 PMID:11747432 PMID:11747433 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chr 7:66,075,819...66,093,576
Ensembl chr 7:66,075,800...66,094,697 		JBrowse link
G ASS1 argininosuccinate synthase 1 involved_in ISO
IBA
IEA
IMP		 (PMID:18473344), (PMID:27287393), (PMID:8792870) RGD
GO_Central
TreeGrafter
UniProt
InterPro
Ensembl		 PMID:8792870 PMID:12470967 PMID:18473344 PMID:27287393 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:631755 NCBI chr 9:130,444,707...130,501,274
Ensembl chr 9:130,444,961...130,501,274 		JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:210,477,685...210,679,107
Ensembl chr 2:210,477,682...210,679,107 		JBrowse link
G NAGS N-acetylglutamate synthase involved_in IEA
IBA		 InterPro
GO_Central
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000118 NCBI chr17:44,004,622...44,009,068
Ensembl chr17:44,004,622...44,009,068 		JBrowse link
G OTC ornithine transcarbamylase involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:38,327,684...38,422,928
Ensembl chr  X:38,352,586...38,421,446 		JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC068533.4 novel protein involved_in IEA InterPro GO_REF:0000002 Ensembl chr 7:66,087,761...66,152,277 JBrowse link
G ASL argininosuccinate lyase involved_in IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:66,075,819...66,093,576
Ensembl chr 7:66,075,800...66,094,697 		JBrowse link
G OTC ornithine transcarbamylase involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:38,327,684...38,422,928
Ensembl chr  X:38,352,586...38,421,446 		JBrowse link
asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASNS asparagine synthetase (glutamine-hydrolyzing) involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA
IDA
IC		 (PMID:2573597)
(PMID:2564390)		 RGD
TreeGrafter
GO_Central
UniProt
MGI
InterPro		 PMID:2564390 PMID:2573597 PMID:2887559 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000118 RGD:2316002 NCBI chr 7:97,851,677...97,928,441
Ensembl chr 7:97,851,677...97,872,542 		JBrowse link
G ASNSD1 asparagine synthetase domain containing 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:189,661,459...189,670,831
Ensembl chr 2:189,661,385...189,670,831 		JBrowse link
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:4193185) Ensembl
MGI
GO_Central
TreeGrafter		 PMID:4193185 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr10:99,396,870...99,430,624
Ensembl chr10:99,396,870...99,430,624 		JBrowse link
G GOT1L1 glutamic-oxaloacetic transaminase 1 like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:37,934,281...37,940,124
Ensembl chr 8:37,934,281...37,940,124 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4193185) Ensembl
MGI		 PMID:4193185 GO_REF:0000107 NCBI chr16:58,707,131...58,734,316
Ensembl chr16:58,707,131...58,734,342 		JBrowse link
beta-alanine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA UniProt GO_REF:0000041 NCBI chr 1:97,077,743...97,921,059
Ensembl chr 1:97,077,743...97,995,000 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390 		JBrowse link
beta-alanine biosynthetic process via 3-ureidopropionate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UPB1 beta-ureidopropionase 1 involved_in IDA
IBA
IEA		 (PMID:22525402), (PMID:29976570) UniProt
GO_Central
TreeGrafter		 PMID:22525402 PMID:29976570 GO_REF:0000033 GO_REF:0000118 NCBI chr22:24,495,332...24,528,390
Ensembl chr22:24,494,107...24,528,390 		JBrowse link
carnosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARNS1 carnosine synthase 1 involved_in
acts_upstream_of_or_within		 IEA
IBA
IDA		 (PMID:20097752), (PMID:24891507) InterPro
GO_Central
MGI
UniProt		 PMID:20097752 PMID:24891507 GO_REF:0000002 GO_REF:0000033 NCBI chr11:67,415,678...67,425,604
Ensembl chr11:67,414,968...67,425,607 		JBrowse link
citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 involved_in IMP (PMID:11092761), (PMID:26297558) UniProt PMID:11092761 PMID:26297558 NCBI chr10:95,605,941...95,656,711
Ensembl chr10:95,605,941...95,656,711 		JBrowse link
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
Ensembl		 PMID:7053379 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:10755426 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943 		JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 involved_in NAS (PMID:14718356) BHF-UCL PMID:14718356 NCBI chr 2:210,477,685...210,679,107
Ensembl chr 2:210,477,682...210,679,107 		JBrowse link
G OTC ornithine transcarbamylase involved_in ISO
IBA
IEA
IDA		 (PMID:2556444), (PMID:8112735) RGD
GO_Central
Ensembl
BHF-UCL		 PMID:2556444 PMID:8112735 PMID:9472964 GO_REF:0000033 GO_REF:0000107 RGD:4144071 NCBI chr  X:38,327,684...38,422,928
Ensembl chr  X:38,352,586...38,421,446 		JBrowse link
cysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase involved_in
acts_upstream_of_or_within		 IDA
ISO
IEA		 (PMID:24416422)
(PMID:15030387)		 BHF-UCL
MGI
Ensembl
UniProt		 PMID:15030387 PMID:24416422 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chr21:43,053,191...43,076,873
Ensembl chr21:43,053,191...43,076,943 		JBrowse link
G CBSL cystathionine beta-synthase like involved_in IEA
IDA		 (PMID:24416422) UniProt
Ensembl
BHF-UCL		 PMID:24416422 GO_REF:0000041 GO_REF:0000043 GO_REF:0000107 NCBI chr21:6,444,869...6,468,621
Ensembl chr21:43,053,191...43,076,943 		JBrowse link
G CTH cystathionine gamma-lyase involved_in IEA
IDA		 (PMID:10212249) UniProt PMID:10212249 GO_REF:0000041 GO_REF:0000043 NCBI chr 1:70,411,268...70,439,851
Ensembl chr 1:70,411,218...70,439,851 		JBrowse link
G GGT1 gamma-glutamyltransferase 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr22:24,583,750...24,628,996
Ensembl chr22:24,594,811...24,629,005 		JBrowse link
cysteine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase involved_in IEA
IBA		 UniProt
GO_Central
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr21:43,053,191...43,076,873
Ensembl chr21:43,053,191...43,076,943 		JBrowse link
G CBSL cystathionine beta-synthase like involved_in IEA
IBA		 InterPro
GO_Central
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr21:6,444,869...6,468,621
Ensembl chr21:43,053,191...43,076,943 		JBrowse link
cysteine biosynthetic process via cystathionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr21:43,053,191...43,076,873
Ensembl chr21:43,053,191...43,076,943 		JBrowse link
G CBSL cystathionine beta-synthase like involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr21:6,444,869...6,468,621
Ensembl chr21:43,053,191...43,076,943 		JBrowse link
G CTH cystathionine gamma-lyase involved_in IDA
IBA		 (PMID:19428278) BHF-UCL
GO_Central		 PMID:19428278 GO_REF:0000033 NCBI chr 1:70,411,268...70,439,851
Ensembl chr 1:70,411,218...70,439,851 		JBrowse link
D-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRR serine racemase involved_in
acts_upstream_of_or_within		 IDA
ISO
IBA
IEA		 (PMID:11054547), (PMID:15193426)
(PMID:10557334), (PMID:11054547), (PMID:12021263), (PMID:15710237)		 UniProt
MGI
GO_Central
TreeGrafter
Ensembl		 PMID:10557334 PMID:11054547 PMID:12021263 PMID:15193426 PMID:15710237 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr17:2,303,378...2,325,264
Ensembl chr17:2,303,383...2,325,260 		JBrowse link
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase involved_in ISO
IEA		 RGD
Ensembl		 PMID:19540876 GO_REF:0000107 RGD:9588538 NCBI chr16:8,674,617...8,784,570
Ensembl chr16:8,674,596...8,784,575 		JBrowse link
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442 		JBrowse link
G GAD1 glutamate decarboxylase 1 involved_in ISO
IBA
IEA
IDA		 (PMID:17384644) RGD
GO_Central
TreeGrafter
UniProt
Ensembl		 PMID:17384644 PMID:17712632 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:6480258 NCBI chr 2:170,813,210...170,861,151
Ensembl chr 2:170,813,213...170,861,151 		JBrowse link
G GAD2 glutamate decarboxylase 2 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl
TreeGrafter		 PMID:22108820 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:401900601 NCBI chr10:26,216,372...26,304,558
Ensembl chr10:26,216,665...26,304,558 		JBrowse link
G SLC1A3 solute carrier family 1 member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305132) Ensembl
MGI		 PMID:15305132 GO_REF:0000107 NCBI chr 5:36,606,606...36,688,334
Ensembl chr 5:36,596,588...36,688,334 		JBrowse link
G SLC38A1 solute carrier family 38 member 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:46,183,063...46,269,043
Ensembl chr12:46,183,063...46,270,017 		JBrowse link
glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLS glutaminase involved_in TAS
IBA
IEA
IDA		 (PMID:21757002)
(PMID:16899818), (PMID:22049910)		 BHF-UCL
GO_Central
TreeGrafter
Ensembl
UniProt		 PMID:16899818 PMID:21757002 PMID:22049910 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:190,880,821...190,965,552
Ensembl chr 2:190,880,821...190,965,552 		JBrowse link
G GLS2 glutaminase 2 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr12:56,470,952...56,488,161
Ensembl chr12:56,470,944...56,488,414 		JBrowse link
G GLUD1 glutamate dehydrogenase 1 involved_in IDA (PMID:11032875) BHF-UCL PMID:11032875 NCBI chr10:87,050,202...87,094,843
Ensembl chr10:87,050,202...87,094,843 		JBrowse link
G GLUD2 glutamate dehydrogenase 2 involved_in IDA (PMID:11032875) BHF-UCL PMID:11032875 NCBI chr  X:121,047,610...121,050,094
Ensembl chr  X:121,047,610...121,050,094 		JBrowse link
G SLC25A12 solute carrier family 25 member 12 ISO RGD PMID:19764902 RGD:13628741 NCBI chr 2:171,783,405...171,894,244
Ensembl chr 2:171,783,405...171,999,859 		JBrowse link
glutamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLUL glutamate-ammonia ligase involved_in ISO
IBA
IEA
TAS		 (PMID:21757002) RGD
GO_Central
TreeGrafter
BHF-UCL
InterPro		 PMID:28323 PMID:4403443 PMID:21757002 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 RGD:2301547 RGD:2301548 NCBI chr 1:182,378,098...182,391,790
Ensembl chr 1:182,378,098...182,392,206 		JBrowse link
G LGSN lengsin, lens protein with glutamine synthetase domain involved_in
NOT|involved_in		 IEA
IBA		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:63,275,951...63,573,607
Ensembl chr 6:63,275,951...63,319,983 		JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HAO1 hydroxyacid oxidase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr20:7,882,985...7,940,458
Ensembl chr20:7,882,985...7,940,458 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 ISO from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr17:18,327,873...18,363,550
Ensembl chr17:18,327,873...18,363,550 		JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 involved_in ISO
IEA		 from L-allothreonine in the absence of tetrahydrofolate RGD
Ensembl		 PMID:3110140 GO_REF:0000107 RGD:2300383 NCBI chr12:57,229,711...57,234,935
Ensembl chr12:57,229,573...57,234,935 		JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHMT1 serine hydroxymethyltransferase 1 involved_in ISO
IEA
IBA		 in the presence of tetrahydrofolate RGD
TreeGrafter
GO_Central
InterPro		 PMID:3110140 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 RGD:2300383 NCBI chr17:18,327,873...18,363,550
Ensembl chr17:18,327,873...18,363,550 		JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 involved_in ISO
IBA
IEA		 in the presence of tetrahydrofolate RGD
GO_Central
TreeGrafter
Ensembl
InterPro		 PMID:3110140 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:2300383 NCBI chr12:57,229,711...57,234,935
Ensembl chr12:57,229,573...57,234,935 		JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate aminotransferase involved_in ISO
IEA
IBA
IDA		 (PMID:22198249) RGD
TreeGrafter
GO_Central
UniProt		 PMID:12383475 PMID:22198249 GO_REF:0000033 GO_REF:0000118 RGD:1599457 NCBI chr 2:240,868,824...240,880,500
Ensembl chr 2:240,868,824...240,880,502 		JBrowse link
G AGXT2 alanine--glyoxylate aminotransferase 2 involved_in IDA (PMID:20018850) BHF-UCL PMID:20018850 NCBI chr 5:34,998,102...35,047,949
Ensembl chr 5:34,998,101...35,048,135 		JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 involved_in IDA (PMID:10934207) CAFA PMID:10934207 NCBI chr 3:146,069,440...146,161,184
Ensembl chr 3:146,035,139...146,163,725 		JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:101,205,984...101,217,581
Ensembl chr 7:101,205,977...101,218,420 		JBrowse link
isoleucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ILVBL ilvB acetolactate synthase like involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:15,114,987...15,125,786
Ensembl chr19:15,114,984...15,125,786 		JBrowse link
G SDS serine dehydratase involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr12:113,392,445...113,403,887
Ensembl chr12:113,392,445...113,426,301 		JBrowse link
G SDSL serine dehydratase like involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:113,422,380...113,438,276
Ensembl chr12:113,422,380...113,438,276 		JBrowse link
L-asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASNS asparagine synthetase (glutamine-hydrolyzing) involved_in IEA UniProt GO_REF:0000041 NCBI chr 7:97,851,677...97,928,441
Ensembl chr 7:97,851,677...97,872,542 		JBrowse link
L-leucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAT1 branched chain amino acid transaminase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:24,810,024...24,949,340
Ensembl chr12:24,810,024...24,949,101 		JBrowse link
G BCAT2 branched chain amino acid transaminase 2 involved_in ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:11733007 GO_REF:0000033 GO_REF:0000118 RGD:1582175 NCBI chr19:48,795,064...48,811,029
Ensembl chr19:48,795,062...48,811,029 		JBrowse link
L-methionine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHMT betaine--homocysteine S-methyltransferase involved_in IDA
IEA
IBA		 (PMID:18230605) BHF-UCL
TreeGrafter
GO_Central		 PMID:18230605 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:79,111,809...79,132,288
Ensembl chr 5:79,111,809...79,132,288 		JBrowse link
G BHMT2 betaine--homocysteine S-methyltransferase 2 involved_in IDA
IEA
IBA		 (PMID:18230605) BHF-UCL
TreeGrafter
GO_Central		 PMID:18230605 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:79,069,767...79,090,069
Ensembl chr 5:79,069,767...79,090,069 		JBrowse link
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADI1 acireductone dioxygenase 1 involved_in IDA
IEA		 (PMID:15938715) UniProt
InterPro		 PMID:15938715 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 NCBI chr 2:3,497,366...3,519,531
Ensembl chr 2:3,497,366...3,519,531 		JBrowse link
G APIP APAF1 interacting protein involved_in IEA
IBA
IMP		 (PMID:22837397), (PMID:23285211) UniProt
GO_Central
TreeGrafter
InterPro		 PMID:22837397 PMID:23285211 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000118 NCBI chr11:34,882,295...34,916,379
Ensembl chr11:34,853,094...34,916,379 		JBrowse link
G ENOPH1 enolase-phosphatase 1 involved_in IEA
IBA
IDA		 (PMID:15843022) UniProt
GO_Central
InterPro		 PMID:15843022 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 NCBI chr 4:82,430,590...82,461,177
Ensembl chr 4:82,430,590...82,461,177 		JBrowse link
G MRI1 methylthioribose-1-phosphate isomerase 1 involved_in TAS
IBA
IEA		 Reactome
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000041 Reactome:R-HSA-1237112 NCBI chr19:13,764,522...13,774,282
Ensembl chr19:13,764,522...13,774,282 		JBrowse link
G MTAP methylthioadenosine phosphorylase involved_in IEA
IBA		 UniProt
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 NCBI chr 9:21,802,636...21,941,115
Ensembl chr 9:21,802,636...21,937,651 		JBrowse link
L-methionine salvage from S-adenosylmethionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APIP APAF1 interacting protein involved_in IEA UniProt GO_REF:0000104 NCBI chr11:34,882,295...34,916,379
Ensembl chr11:34,853,094...34,916,379 		JBrowse link
G ENOPH1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr 4:82,430,590...82,461,177
Ensembl chr 4:82,430,590...82,461,177 		JBrowse link
G MRI1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr19:13,764,522...13,774,282
Ensembl chr19:13,764,522...13,774,282 		JBrowse link
L-proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AL117348.2 novel protein involved_in IEA UniProt GO_REF:0000041 Ensembl chr 1:225,886,696...225,924,278 JBrowse link
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 involved_in IEA UniProt GO_REF:0000041 NCBI chr10:95,605,941...95,656,711
Ensembl chr10:95,605,941...95,656,711 		JBrowse link
G NOXRED1 NADP dependent oxidoreductase domain containing 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:77,394,021...77,426,013
Ensembl chr14:77,394,021...77,423,523 		JBrowse link
G OAT ornithine aminotransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr10:124,397,303...124,418,923
Ensembl chr10:124,397,303...124,418,976 		JBrowse link
G PYCR1 pyrroline-5-carboxylate reductase 1 involved_in IEA
IBA		 UniProt
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000118 NCBI chr17:81,932,391...81,937,300
Ensembl chr17:81,932,384...81,942,412 		JBrowse link
G PYCR2 pyrroline-5-carboxylate reductase 2 involved_in IEA
IBA		 UniProt
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000118 NCBI chr 1:225,919,878...225,924,250
Ensembl chr 1:225,919,877...225,924,340 		JBrowse link
G PYCR3 pyrroline-5-carboxylate reductase 3 involved_in IDA
IEA
IBA		 (PMID:23024808) UniProt
TreeGrafter
GO_Central		 PMID:23024808 GO_REF:0000033 GO_REF:0000041 GO_REF:0000118 NCBI chr 8:143,603,210...143,609,575
Ensembl chr 8:143,603,210...143,609,773 		JBrowse link
L-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHGDH phosphoglycerate dehydrogenase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 1:119,711,934...119,744,215
Ensembl chr 1:119,648,411...119,744,218 		JBrowse link
G PSAT1 phosphoserine aminotransferase 1 involved_in IEA
IBA
IDA
NAS		 (PMID:37627284)
(PMID:10637769)		 InterPro
GO_Central
TreeGrafter
UniProt		 PMID:10637769 PMID:37627284 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000118 NCBI chr 9:78,297,125...78,330,093
Ensembl chr 9:78,297,125...78,330,093 		JBrowse link
G PSPH phosphoserine phosphatase involved_in IEA
IBA
IMP		 (PMID:14673469) UniProt
GO_Central
TreeGrafter
InterPro		 PMID:14673469 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000118 NCBI chr 7:56,011,064...56,051,444
Ensembl chr 7:56,011,051...56,051,604 		JBrowse link
G SERINC3 serine incorporator 3 involved_in TAS Reactome Reactome:R-HSA-977347 NCBI chr20:44,496,221...44,522,070
Ensembl chr20:44,496,221...44,522,085 		JBrowse link
G SERINC5 serine incorporator 5 involved_in TAS Reactome Reactome:R-HSA-977347 NCBI chr 5:80,111,225...80,256,048
Ensembl chr 5:80,111,651...80,256,048 		JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 involved_in ISO
IEA		 RGD
Ensembl		 PMID:10457370 GO_REF:0000107 RGD:2300380 NCBI chr12:57,229,711...57,234,935
Ensembl chr12:57,229,573...57,234,935 		JBrowse link
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:106,077,662...106,098,695
Ensembl chr11:106,075,501...106,098,699 		JBrowse link
G AASS aminoadipate-semialdehyde synthase involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:122,073,549...122,144,249
Ensembl chr 7:122,064,583...122,144,308 		JBrowse link
methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADI1 acireductone dioxygenase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:3,497,366...3,519,531
Ensembl chr 2:3,497,366...3,519,531 		JBrowse link
G APIP APAF1 interacting protein involved_in IEA UniProt GO_REF:0000043 NCBI chr11:34,882,295...34,916,379
Ensembl chr11:34,853,094...34,916,379 		JBrowse link
G BHMT betaine--homocysteine S-methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15217352) RGD
MGI
UniProt
InterPro		 PMID:15217352 PMID:15845641 GO_REF:0000002 GO_REF:0000117 RGD:1359026 NCBI chr 5:79,111,809...79,132,288
Ensembl chr 5:79,111,809...79,132,288 		JBrowse link
G BHMT2 betaine--homocysteine S-methyltransferase 2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000117 NCBI chr 5:79,069,767...79,090,069
Ensembl chr 5:79,069,767...79,090,069 		JBrowse link
G ENOPH1 enolase-phosphatase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:82,430,590...82,461,177
Ensembl chr 4:82,430,590...82,461,177 		JBrowse link
G MRI1 methylthioribose-1-phosphate isomerase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr19:13,764,522...13,774,282
Ensembl chr19:13,764,522...13,774,282 		JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IMP (PMID:25633902) BHF-UCL PMID:25633902 NCBI chr14:64,388,353...64,460,025
Ensembl chr14:64,388,031...64,463,457 		JBrowse link
G MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:74,114,560...74,303,099
Ensembl chr 4:74,114,174...74,303,099 		JBrowse link
G MTHFR methylenetetrahydrofolate reductase involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:15217352) TreeGrafter
MGI
GO_Central		 PMID:15217352 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:11,785,723...11,805,964
Ensembl chr 1:11,785,723...11,806,455 		JBrowse link
G MTR 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA
IMP		 (PMID:11158293)
(PMID:23825108)		 RGD
TreeGrafter
MGI
Ensembl
GO_Central
UniProt
InterPro
BHF-UCL		 PMID:11158293 PMID:11730351 PMID:15845641 PMID:23825108 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 RGD:1359026 RGD:1601423 NCBI chr 1:236,795,281...236,903,981
Ensembl chr 1:236,795,260...236,921,278 		JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in IDA
IBA
IEA		 (PMID:11466310) BHF-UCL
GO_Central
UniProt		 PMID:11466310 GO_REF:0000033 GO_REF:0000043 NCBI chr 5:7,850,859...7,901,113
Ensembl chr 5:7,851,186...7,906,025 		JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 involved_in IDA (PMID:19278978) BHF-UCL PMID:19278978 NCBI chr 1:203,626,832...203,744,081
Ensembl chr 1:203,626,832...203,744,081 		JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 involved_in IMP (PMID:11092761), (PMID:26297558) UniProt PMID:11092761 PMID:26297558 NCBI chr10:95,605,941...95,656,711
Ensembl chr10:95,605,941...95,656,711 		JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARK7 Parkinsonism associated deglycase involved_in IMP (PMID:16731528) ParkinsonsUK-UCL PMID:16731528 NCBI chr 1:7,961,711...7,985,505
Ensembl chr 1:7,954,291...7,985,505 		JBrowse link
proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AL117348.2 novel protein involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 Ensembl chr 1:225,886,696...225,924,278 JBrowse link
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 involved_in IEA
IMP
TAS		 (PMID:11092761), (PMID:26297558)
(PMID:8761662)		 UniProt
InterPro
PINC		 PMID:8761662 PMID:11092761 PMID:26297558 GO_REF:0000002 GO_REF:0000043 NCBI chr10:95,605,941...95,656,711
Ensembl chr10:95,605,941...95,656,711 		JBrowse link
G PYCR1 pyrroline-5-carboxylate reductase 1 involved_in IDA
IEA
TAS		 (PMID:16730026)
(PMID:1730675)		 UniProt
PINC
InterPro		 PMID:1730675 PMID:16730026 GO_REF:0000002 GO_REF:0000043 NCBI chr17:81,932,391...81,937,300
Ensembl chr17:81,932,384...81,942,412 		JBrowse link
G PYCR2 pyrroline-5-carboxylate reductase 2 involved_in IEA
IDA		 (PMID:23024808) UniProt
InterPro		 PMID:23024808 GO_REF:0000002 GO_REF:0000043 NCBI chr 1:225,919,878...225,924,250
Ensembl chr 1:225,919,877...225,924,340 		JBrowse link
G PYCR3 pyrroline-5-carboxylate reductase 3 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 8:143,603,210...143,609,575
Ensembl chr 8:143,603,210...143,609,773 		JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,474,111...28,495,575 		JBrowse link
selenocysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEPHS1 selenophosphate synthetase 1 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:13,317,428...13,348,293
Ensembl chr10:13,317,428...13,348,298 		JBrowse link
G SEPHS2 selenophosphate synthetase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
NAS		 (PMID:17346238)
(PMID:8986768)		 Ensembl
MGI
GO_Central
TreeGrafter
UniProt		 PMID:8986768 PMID:17346238 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr16:30,443,631...30,445,874
Ensembl chr16:30,443,631...30,445,874 		JBrowse link
serine family amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IMP (PMID:25633902) BHF-UCL PMID:25633902 NCBI chr14:64,388,353...64,460,025
Ensembl chr14:64,388,031...64,463,457 		JBrowse link
threonine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THNSL2 threonine synthase like 2 NOT|acts_upstream_of_or_within ISO (PMID:17034760) MGI PMID:17034760 NCBI chr 2:88,170,346...88,186,627
Ensembl chr 2:88,170,295...88,186,636 		JBrowse link
tyrosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAH phenylalanine hydroxylase involved_in ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:16953590 GO_REF:0000033 GO_REF:0000118 RGD:1601531 NCBI chr12:102,836,889...102,958,441
Ensembl chr12:102,836,889...102,958,410 		JBrowse link
tyrosine biosynthetic process, by oxidation of phenylalanine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAH phenylalanine hydroxylase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:58807|PMID:2308957) RGD
GOC
GOC		 PMID:2308957 PMID:10839989 GO_REF:0000108 MGI:58807 RGD:1601535 NCBI chr12:102,836,889...102,958,441
Ensembl chr12:102,836,889...102,958,410 		JBrowse link
G PCBD1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr10:70,882,280...70,888,565
Ensembl chr10:70,882,280...70,888,565 		JBrowse link
G PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 5:134,905,131...134,962,644
Ensembl chr 5:134,905,120...135,007,959 		JBrowse link
valine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAT1 branched chain amino acid transaminase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:24,810,024...24,949,340
Ensembl chr12:24,810,024...24,949,101 		JBrowse link
G BCAT2 branched chain amino acid transaminase 2 involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr19:48,795,064...48,811,029
Ensembl chr19:48,795,062...48,811,029 		JBrowse link
G ILVBL ilvB acetolactate synthase like involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:15,114,987...15,125,786
Ensembl chr19:15,114,984...15,125,786 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    metabolic process 12464
      primary metabolic process 10695
        amino acid metabolic process 316
          amino acid biosynthetic process 80
            alpha-amino acid biosynthetic process + 71
            amino acid salvage + 7
            beta-alanine biosynthetic process + 2
            carnosine biosynthetic process 1
            diaminopimelate biosynthetic process 0
            gamma-aminobutyric acid biosynthetic process 6
            negative regulation of amino acid biosynthetic process + 1
            nicotianamine biosynthetic process 0
            para-aminobenzoic acid biosynthetic process 0
            positive regulation of amino acid biosynthetic process + 1
            pyrrolysine biosynthetic process 0
            regulation of cellular amino acid biosynthetic process + 3
paths to the root