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ONTOLOGY REPORT - ANNOTATIONS

Term:amino acid biosynthetic process
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Accession:GO:0008652 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid anabolism;   amino acid biosynthesis;   amino acid formation;   amino acid synthesis;   cellular amino acid biosynthetic process
 xref: Wikipedia:Amino_acid_synthesis


show annotations for term's descendants           Sort by:
amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:177,964,834...178,046,573
Ensembl chr 4:177,964,834...178,046,597 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Psph phosphoserine phosphatase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:26,882,524...26,905,084
Ensembl chr12:26,883,133...26,905,074 		JBrowse link
'de novo' L-methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase involved_in ISO
IEA		 (PMID:10529246)
GO_REF:0000107		 RGD
Ensembl		 PMID:10529246 GO_REF:0000107 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742 		JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Otc ornithine transcarbamylase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in
acts_upstream_of_or_within		 IDA
IBA
ISO		 GO_REF:0000033
(PMID:2573597)		 GO_Central
RGD		 PMID:2573597 PMID:2887559 GO_REF:0000033, RGD:2316002 NCBI chr 4:35,784,995...35,803,474
Ensembl chr 4:35,785,237...35,803,423 		JBrowse link
G Asnsd1 asparagine synthetase domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:48,126,808...48,139,073
Ensembl chr 9:48,126,808...48,139,073 		JBrowse link
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:4193185)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:4193185 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:64,860,308...64,873,656
Ensembl chr16:64,860,704...64,866,162 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) RGD PMID:4193185 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
beta-alanine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982 		JBrowse link
G Upb1 beta-ureidopropionase 1 TAS RGD PMID:8449931 RGD:634224 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
beta-alanine biosynthetic process via 3-ureidopropionate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in ISO
IBA
ISS		 (PMID:22525402), (PMID:29976570)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:22525402 PMID:29976570 GO_REF:0000024 GO_REF:0000033 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590 		JBrowse link
carnosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carns1 carnosine synthase 1 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:20097752)
(PMID:20097752), (PMID:24891507)
GO_REF:0000033		 RGD
GO_Central		 PMID:20097752 PMID:24891507 GO_REF:0000033 NCBI chr 1:201,459,061...201,470,019
Ensembl chr 1:201,459,076...201,469,845 		JBrowse link
citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO (PMID:11092761), (PMID:26297558) RGD PMID:11092761 PMID:26297558 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IDA RGD PMID:7053379 RGD:10755426 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861 		JBrowse link
G Otc ornithine transcarbamylase involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:2556444), (PMID:8112735)		 GO_Central
RGD		 PMID:2556444 PMID:8112735 PMID:9472964 GO_REF:0000033, RGD:4144071 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
cysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in
acts_upstream_of_or_within		 ISO (PMID:24416422)
MGI:1857139 (PMID:15030387)		 RGD PMID:15030387 PMID:24416422 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cth cystathionine gamma-lyase involved_in IEA
ISS
ISO		 GO_REF:0000041
GO_REF:0000024
(PMID:10212249)		 UniProt
RGD		 PMID:10212249 GO_REF:0000024 GO_REF:0000041 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234 		JBrowse link
G Ggt1 gamma-glutamyltransferase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:12468440)		 Ensembl
RGD		 PMID:12468440 GO_REF:0000107 NCBI chr20:13,074,695...13,104,095
Ensembl chr20:13,074,700...13,108,442 		JBrowse link
cysteine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in IEA
IBA		 GO_REF:0000104
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000104 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
cysteine biosynthetic process via cystathionine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase involved_in IEA GO_REF:0000002
GO_REF:0000104		 InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr20:9,708,089...9,732,623
Ensembl chr20:9,708,090...9,732,764 		JBrowse link
G Cth cystathionine gamma-lyase involved_in ISO
IBA
IEA		 (PMID:19428278)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:19428278 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:246,975,888...247,002,234
Ensembl chr 2:246,975,894...247,002,234 		JBrowse link
D-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srr serine racemase involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:11054547), (PMID:15193426)
(PMID:10557334), (PMID:11054547), (PMID:12021263), (PMID:15710237)
GO_REF:0000033		 RGD
GO_Central		 PMID:10557334 PMID:11054547 PMID:12021263 PMID:15193426 PMID:15710237 GO_REF:0000033 NCBI chr10:59,769,563...59,786,688
Ensembl chr10:59,769,571...59,787,011 		JBrowse link
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abat 4-aminobutyrate aminotransferase IMP RGD PMID:19540876 RGD:9588538 NCBI chr10:6,996,688...7,092,835
Ensembl chr10:6,999,819...7,092,835 		JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26430123)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26430123 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Gad1 glutamate decarboxylase 1 involved_in IDA
ISO
IBA
IEA		 (PMID:9177246)
GO_REF:0000033
(PMID:17384644)
GO_REF:0000107
PMID:1924335		 RGD
GO_Central
Ensembl		 PMID:9177246 PMID:17384644 PMID:17712632 PMID:1924335 GO_REF:0000033 GO_REF:0000107, RGD:6480258, RGD:728511 NCBI chr 3:55,369,704...55,410,335
Ensembl chr 3:55,369,704...55,410,333 		JBrowse link
G Gad2 glutamate decarboxylase 2 involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:22108820 GO_REF:0000033, RGD:401900601 NCBI chr17:84,763,630...84,826,155
Ensembl chr17:84,763,628...84,826,155 		JBrowse link
G Slc1a3 solute carrier family 1 member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1931872 (PMID:15305132)		 Ensembl
RGD		 PMID:15305132 GO_REF:0000107 NCBI chr 2:57,755,495...57,830,605
Ensembl chr 2:57,755,497...57,830,605 		JBrowse link
G Slc38a1 solute carrier family 38, member 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:32668809)		 UniProt
RGD		 PMID:32668809 GO_REF:0000024 NCBI chr 7:127,733,230...127,802,541
Ensembl chr 7:127,738,226...127,802,218 		JBrowse link
glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gls glutaminase involved_in IEA
ISO
IBA
ISS		 GO_REF:0000107
(PMID:22228304)
GO_REF:0000033
GO_REF:0000024
(PMID:16899818), (PMID:22049910)		 Ensembl
RGD
GO_Central
UniProt		 PMID:16899818 PMID:22049910 PMID:22228304 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:49,344,616...49,416,900
Ensembl chr 9:49,344,781...49,416,900 		JBrowse link
G Gls2 glutaminase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:617,252...633,424
Ensembl chr 7:617,288...633,426 		JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:11032875) RGD PMID:11032875 NCBI chr16:9,640,312...9,673,961
Ensembl chr16:9,640,312...9,673,957 		JBrowse link
G Slc25a12 solute carrier family 25 member 12 IMP RGD PMID:19764902 RGD:13628741 NCBI chr 3:56,097,166...56,191,841
Ensembl chr 3:56,097,269...56,192,100 		JBrowse link
glutamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glul glutamate-ammonia ligase involved_in IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro
RGD		 PMID:4403443 PMID:28323 GO_REF:0000002 GO_REF:0000033, RGD:2301548, RGD:2301547 NCBI chr13:65,969,053...66,035,121
Ensembl chr13:66,025,630...66,035,108 		JBrowse link
G Lgsn lengsin, lens protein with glutamine synthetase domain involved_in
NOT|involved_in		 IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 9:33,416,362...33,447,919
Ensembl chr 9:33,420,484...33,447,907 		JBrowse link
glycine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hao1 hydroxyacid oxidase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:121,757,400...121,828,721
Ensembl chr 3:121,771,836...121,828,721 		JBrowse link
G Sardh sarcosine dehydrogenase TAS RGD PMID:9839943 RGD:634034 NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 IDA from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IDA from L-allothreonine in the absence of tetrahydrofolate RGD PMID:3110140 RGD:2300383 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
G Tha1 threonine aldolase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:103,094,681...103,100,169
Ensembl chr10:103,094,681...103,100,519 		JBrowse link
glycine biosynthetic process from serine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shmt1 serine hydroxymethyltransferase 1 involved_in IDA
IBA		 in the presence of tetrahydrofolate
GO_REF:0000033		 GO_Central
RGD		 PMID:3110140 GO_REF:0000033, RGD:2300383 NCBI chr10:45,468,698...45,490,833
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in IDA
IBA		 in the presence of tetrahydrofolate
GO_REF:0000033		 GO_Central
RGD		 PMID:3110140 GO_REF:0000033, RGD:2300383 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate aminotransferase involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:22198249)		 GO_Central
RGD		 PMID:22198249 PMID:12383475 GO_REF:0000033, RGD:1599457 NCBI chr 9:93,675,384...93,685,337
Ensembl chr 9:93,675,384...93,685,336 		JBrowse link
G Agxt2 alanine-glyoxylate aminotransferase 2 involved_in ISO (PMID:20018850) RGD PMID:20018850 NCBI chr 2:59,336,252...59,377,664
Ensembl chr 2:59,336,283...59,377,926 		JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 involved_in ISO
IEA		 (PMID:10934207)
GO_REF:0000107		 RGD
Ensembl		 PMID:10934207 GO_REF:0000107 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:16447251)		 Ensembl
RGD		 PMID:16447251 GO_REF:0000107 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
isoleucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ilvbl ilvB acetolactate synthase like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:11,039,870...11,049,924
Ensembl chr 7:11,039,871...11,049,924 		JBrowse link
G Sds serine dehydratase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:36,083,226...36,090,540
Ensembl chr12:36,083,229...36,088,203 		JBrowse link
G Sdsl serine dehydratase-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:36,099,693...36,109,914
Ensembl chr12:36,099,693...36,109,906 		JBrowse link
L-arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asl argininosuccinate lyase involved_in NAS
IEA
ISO
ISS		 GO_REF:0000041
(PMID:22081021)
(PMID:11747432), (PMID:11747433)
GO_REF:0000024		 UniProt
RGD		 PMID:11747432 PMID:11747433 PMID:22081021 PMID:2789519 GO_REF:0000024 GO_REF:0000041, RGD:632221 NCBI chr12:26,659,664...26,677,136
Ensembl chr12:26,659,565...26,679,662 		JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in IDA
IBA
IMP
ISO
IEA		 GO_REF:0000033
PMID:19491403
(PMID:18473344), (PMID:27287393), (PMID:8792870)
GO_REF:0000041		 GO_Central
RGD
UniProt		 PMID:8792870 PMID:18473344 PMID:27287393 PMID:12470967 PMID:19491403 GO_REF:0000033 GO_REF:0000041, RGD:631755, RGD:12859071 NCBI chr 3:14,747,355...14,796,909
Ensembl chr 3:14,747,368...14,796,903 		JBrowse link
G Nags N-acetylglutamate synthase involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr10:87,098,330...87,102,465
Ensembl chr10:87,098,330...87,102,465 		JBrowse link
G Otc ornithine transcarbamylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:12,453,834...12,529,954
Ensembl chr  X:12,453,834...12,566,918 		JBrowse link
L-asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:35,784,995...35,803,474
Ensembl chr 4:35,785,237...35,803,423 		JBrowse link
L-glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 IDA RGD PMID:16489927 RGD:13504861 NCBI chr 1:242,357,293...242,381,535
Ensembl chr 1:242,357,306...242,380,633 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 IDA RGD PMID:16489927 RGD:13504861 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
L-histidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:17,089,947...17,170,036
Ensembl chr14:17,089,952...17,170,112 		JBrowse link
L-leucine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:177,964,834...178,046,573
Ensembl chr 4:177,964,834...178,046,597 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:11733007 GO_REF:0000033, RGD:1582175 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
L-methionine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase involved_in ISO
IBA
IEA		 (PMID:18230605)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18230605 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742 		JBrowse link
G Bhmt2 betaine-homocysteine S-methyltransferase 2 involved_in IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(PMID:18230605)		 Ensembl
GO_Central
RGD		 PMID:18230605 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:24,895,525...24,912,475
Ensembl chr 2:24,895,533...24,912,475 		JBrowse link
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA
ISS
ISO		 GO_REF:0000041
GO_REF:0000024
(PMID:15938715)		 UniProt
RGD		 PMID:15938715 GO_REF:0000024 GO_REF:0000041 NCBI chr 6:45,306,885...45,313,847
Ensembl chr 6:45,306,841...45,313,842 		JBrowse link
G Apip APAF1 interacting protein involved_in IEA
IBA
ISO		 GO_REF:0000041
GO_REF:0000033
(PMID:22837397), (PMID:23285211)		 UniProt
GO_Central
RGD		 PMID:22837397 PMID:23285211 GO_REF:0000033 GO_REF:0000041 NCBI chr 3:89,431,964...89,458,000
Ensembl chr 3:89,432,037...89,458,340 		JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA
IBA
ISO
ISS		 GO_REF:0000041
GO_REF:0000033
(PMID:15843022)
GO_REF:0000024		 UniProt
GO_Central
RGD		 PMID:15843022 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr14:9,531,336...9,557,797
Ensembl chr14:9,531,339...9,569,273 		JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr19:23,907,327...23,913,721
Ensembl chr19:23,907,335...23,913,320 		JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr 5:103,874,460...103,920,684
Ensembl chr 5:103,873,020...103,939,406 		JBrowse link
L-proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Eef1d eukaryotic translation elongation factor 1 delta involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:107,581,930...107,596,735
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
G Noxred1 NADP-dependent oxidoreductase domain containing 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:106,862,350...106,888,113
Ensembl chr 6:106,862,343...106,884,712 		JBrowse link
G Oat ornithine aminotransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:187,347,862...187,367,644
Ensembl chr 1:187,347,865...187,367,682 		JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr10:105,917,732...105,922,658
Ensembl chr10:105,917,680...105,922,549 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 NCBI chr13:92,626,462...92,630,256
Ensembl chr13:92,626,471...92,634,184 		JBrowse link
G Pycr3 pyrroline-5-carboxylate reductase 3 involved_in IEA
IBA
ISS
ISO		 GO_REF:0000041
GO_REF:0000033
GO_REF:0000024
(PMID:23024808)		 UniProt
GO_Central
RGD		 PMID:23024808 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 NCBI chr 7:107,603,543...107,608,831
Ensembl chr 7:107,581,930...107,608,799 		JBrowse link
L-serine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011698.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 2:153,941,154...153,942,719 JBrowse link
G Phgdh phosphoglycerate dehydrogenase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
G Psat1 phosphoserine aminotransferase 1 involved_in ISO
IBA		 (PMID:37627284)
GO_REF:0000033		 RGD
GO_Central		 PMID:37627284 GO_REF:0000033 NCBI chr 1:213,196,709...213,218,564
Ensembl chr 1:213,196,709...213,218,682 		JBrowse link
G Psph phosphoserine phosphatase involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:14673469)		 UniProt
GO_Central
RGD		 PMID:14673469 GO_REF:0000024 GO_REF:0000033 NCBI chr12:26,882,524...26,905,084
Ensembl chr12:26,883,133...26,905,074 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IDA RGD PMID:10457370 RGD:2300380 NCBI chr 7:63,358,961...63,364,293
Ensembl chr 7:63,358,961...63,364,236 		JBrowse link
L-valine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:177,964,834...178,046,573
Ensembl chr 4:177,964,834...178,046,597 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,040,407...96,060,008
Ensembl chr 1:96,042,625...96,060,007 		JBrowse link
G Ilvbl ilvB acetolactate synthase like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:11,039,870...11,049,924
Ensembl chr 7:11,039,871...11,049,924 		JBrowse link
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:1,453,226...1,463,990
Ensembl chr 8:1,452,282...1,463,966 		JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:51,606,461...51,663,136
Ensembl chr 4:51,606,462...51,663,136 		JBrowse link
methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase acts_upstream_of_or_within IDA
ISO		 (PMID:15217352) RGD PMID:15217352 PMID:15845641 RGD:1359026 NCBI chr 2:24,859,871...24,879,449
Ensembl chr 2:24,859,873...24,879,742 		JBrowse link
G Bhmt2 betaine-homocysteine S-methyltransferase 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 2:24,895,525...24,912,475
Ensembl chr 2:24,895,533...24,912,475 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO
IEA		 (PMID:25633902)
GO_REF:0000107		 RGD
Ensembl		 PMID:25633902 GO_REF:0000107 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:17,089,947...17,170,036
Ensembl chr14:17,089,952...17,170,112 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2385823 (PMID:15217352)		 GO_Central
RGD		 PMID:15217352 GO_REF:0000033 NCBI chr 5:158,465,248...158,484,999
Ensembl chr 5:158,465,296...158,483,797 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase acts_upstream_of_or_within
involved_in		 IDA
ISO
IBA		 MGI:2180496 (PMID:11158293)
PMID:20424322
GO_REF:0000033
(PMID:23825108)		 RGD
GO_Central		 PMID:11158293 PMID:23825108 PMID:15845641 PMID:20424322 PMID:11730351 GO_REF:0000033, RGD:1359026, RGD:10054082, RGD:1601423 NCBI chr17:58,219,998...58,308,560
Ensembl chr17:58,220,071...58,304,822 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO
IBA
IEA		 (PMID:11466310)
(PMID:17369066)
GO_REF:0000033
GO_REF:0000043		 RGD
GO_Central
UniProt		 PMID:11466310 PMID:17369066 GO_REF:0000033 GO_REF:0000043 NCBI chr 1:34,866,991...34,899,425
Ensembl chr 1:34,867,089...34,899,425 		JBrowse link
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 involved_in ISO (PMID:19278978) RGD PMID:19278978 NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
ornithine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO (PMID:11092761), (PMID:26297558) RGD PMID:11092761 PMID:26297558 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase acts_upstream_of ISS
ISO		 GO_REF:0000024
(PMID:16731528)		 ParkinsonsUK-UCL
RGD		 PMID:16731528 GO_REF:0000024 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 involved_in ISO (PMID:11092761), (PMID:26297558) RGD PMID:11092761 PMID:26297558 NCBI chr 1:239,375,657...239,407,956
Ensembl chr 1:239,375,669...239,407,890 		JBrowse link
G Pycr1 pyrroline-5-carboxylate reductase 1 involved_in ISO (PMID:16730026) RGD PMID:16730026 NCBI chr10:105,917,732...105,922,658
Ensembl chr10:105,917,680...105,922,549 		JBrowse link
G Pycr2 pyrroline-5-carboxylate reductase 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:23024808)		 UniProt
RGD		 PMID:23024808 GO_REF:0000024 NCBI chr13:92,626,462...92,630,256
Ensembl chr13:92,626,471...92,634,184 		JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:19284480) RGD PMID:19284480 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
selenocysteine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sephs1 selenophosphate synthetase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:73,354,435...73,382,803
Ensembl chr17:73,356,530...73,382,593 		JBrowse link
G Sephs2 selenophosphate synthetase 2 acts_upstream_of_or_within ISO (PMID:17346238) RGD PMID:17346238 NCBI chr 1:181,893,146...181,895,464
Ensembl chr 1:181,892,599...181,895,497 		JBrowse link
serine family amino acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISO
IEA		 (PMID:25633902)
GO_REF:0000107		 RGD
Ensembl		 PMID:25633902 GO_REF:0000107 NCBI chr 6:94,977,862...95,045,375
Ensembl chr 6:94,977,862...95,045,372 		JBrowse link
G Phgdh phosphoglycerate dehydrogenase TAS RGD PMID:9163325 RGD:61693 NCBI chr 2:185,906,962...185,936,054
Ensembl chr 2:185,906,966...185,935,944 		JBrowse link
threonine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 NOT|acts_upstream_of_or_within ISO (PMID:17034760) RGD PMID:17034760 NCBI chr 4:103,112,974...103,132,122
Ensembl chr 4:103,112,963...103,132,017 		JBrowse link
tyrosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:16953590 GO_REF:0000033, RGD:1601531 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
tyrosine biosynthetic process, by oxidation of phenylalanine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase involved_in IDA
IEA		 GO_REF:0000108 GOC
RGD		 PMID:10839989 GO_REF:0000108, RGD:1601535 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:29,037,545...29,044,322
Ensembl chr20:28,953,864...29,044,292
Ensembl chr20:28,953,864...29,044,292 		JBrowse link
G Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:8,845,161...8,896,343
Ensembl chr17:8,845,084...8,910,539 		JBrowse link
G Txndc15 thioredoxin domain containing 15 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:8,898,074...8,910,538
Ensembl chr17:8,845,084...8,910,539
Ensembl chr 7:8,845,084...8,910,539 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        biosynthetic process 8474
          amino acid biosynthetic process 78
            4-aminobenzoate biosynthetic process 0
            alpha-amino acid biosynthetic process + 69
            amino acid salvage + 7
            beta-alanine biosynthetic process + 2
            carnosine biosynthetic process 1
            diaminopimelate biosynthetic process 0
            gamma-aminobutyric acid biosynthetic process 6
            negative regulation of amino acid biosynthetic process + 1
            nicotianamine biosynthetic process 0
            positive regulation of amino acid biosynthetic process + 1
            pyrrolysine biosynthetic process 0
            regulation of amino acid biosynthetic process + 3
Path 2
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      metabolic process 11953
        primary metabolic process 10582
          amino acid metabolic process 299
            amino acid biosynthetic process 78
              4-aminobenzoate biosynthetic process 0
              alpha-amino acid biosynthetic process + 69
              amino acid salvage + 7
              beta-alanine biosynthetic process + 2
              carnosine biosynthetic process 1
              diaminopimelate biosynthetic process 0
              gamma-aminobutyric acid biosynthetic process 6
              negative regulation of amino acid biosynthetic process + 1
              nicotianamine biosynthetic process 0
              positive regulation of amino acid biosynthetic process + 1
              pyrrolysine biosynthetic process 0
              regulation of amino acid biosynthetic process + 3
paths to the root