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ONTOLOGY REPORT - ANNOTATIONS


Term:proteasome regulatory particle, base subcomplex
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Accession:GO:0008540 term browser browse the term
Definition:The subcomplex of the proteasome regulatory particle that directly associates with the proteasome core complex.


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proteasome regulatory particle, base subcomplex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psmc1 proteasome 26S subunit, ATPase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,123,283...124,135,644
Ensembl chr 6:124,123,228...124,135,658
JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:9,867,132...9,881,383
Ensembl chr 4:9,867,101...9,881,484
JBrowse link
G Psmc3 proteasome 26S subunit, ATPase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:79,876,938...79,882,319
Ensembl chr 3:79,876,938...79,882,319
JBrowse link
G Psmc4 proteasome 26S subunit, ATPase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:84,978,220...84,986,536
Ensembl chr 1:84,978,206...84,986,581
JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:94,445,877...94,451,811
Ensembl chr10:94,445,877...94,451,811
JBrowse link
G Psmc6 proteasome 26S subunit, ATPase 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:19,667,453...19,688,916
Ensembl chr15:19,667,453...19,688,914
JBrowse link
G Psmd1 proteasome 26S subunit, non-ATPase 1 IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 9:93,080,618...93,155,033
Ensembl chr 9:93,080,615...93,155,027
JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 colocalizes_with ISO
IEA
(PMID:19490896)
GO_REF:0000107
RGD
Ensembl
PMID:19490896 GO_REF:0000107 NCBI chr  X:112,323,188...112,328,642
Ensembl chr  X:112,323,187...112,328,642
JBrowse link
G Psmd2 proteasome 26S subunit, non-ATPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:83,934,098...83,944,725
Ensembl chr11:83,934,087...83,944,763
JBrowse link
G Psmd4 proteasome 26S subunit, non-ATPase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:196,198,303...196,207,569
Ensembl chr 2:196,198,038...196,207,560
JBrowse link
G Psmd5 proteasome 26S subunit, non-ATPase 5 colocalizes_with ISO (PMID:19412159), (PMID:19490896) RGD PMID:19412159, PMID:19490896 NCBI chr 3:13,916,199...13,937,031
Ensembl chr 3:13,916,203...13,933,658
JBrowse link
G Psmd9 proteasome 26S subunit, non-ATPase 9 colocalizes_with ISO (PMID:19490896) RGD PMID:19490896 NCBI chr12:38,786,539...38,805,121
Ensembl chr12:38,786,540...38,805,121
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    protein-containing complex 6093
      proteasome regulatory particle, base subcomplex 12
        cytosolic proteasome regulatory particle, base subcomplex 0
        nuclear proteasome regulatory particle, base subcomplex 0
Path 2
Term Annotations click to browse term
  cellular_component 20609
    protein-containing complex 6093
      catalytic complex 1487
        peptidase complex 103
          endopeptidase complex 79
            proteasome complex 73
              proteasome accessory complex 27
                proteasome regulatory particle 22
                  proteasome regulatory particle, base subcomplex 12
                    cytosolic proteasome regulatory particle, base subcomplex 0
                    nuclear proteasome regulatory particle, base subcomplex 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.