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ONTOLOGY REPORT - ANNOTATIONS

Term:histone mRNA metabolic process
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Accession:GO:0008334 term browser browse the term
Definition:The chemical reactions and pathways involving an mRNA encoding a histone.
Comment:In higher Eukaryotes, histone mRNAs (stem-loop containing) are non-polyadenylated and thus have a different form of 3'-end regulation to other mRNAs. In lower Eukaryotes, the 3'-ends of histone mRNAs are polyadenylated.
Synonyms:exact_synonym: histone mRNA metabolism
 narrow_synonym: stem-loop-containing histone mRNA 3'-end processing


show annotations for term's descendants           Sort by:
histone mRNA metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mblac1 metallo-beta-lactamase domain containing 1 involved_in ISO
IEA
ISS 		(PMID:30507380)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:30507380 GO_REF:0000024 GO_REF:0000107 NCBI chr12:17,071,465...17,072,736
Ensembl chr12:17,071,465...17,072,735 		JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
IEA 		(PMID:17499042)
GO_REF:0000107 		RGD
Ensembl		 PMID:17499042 GO_REF:0000107 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089 		JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO
IEA 		(PMID:17499042)
GO_REF:0000107 		RGD
Ensembl		 PMID:17499042 GO_REF:0000107 NCBI chr11:68,821,026...68,829,863
Ensembl chr11:68,817,740...68,851,885 		JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16086026) RGD PMID:16086026 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557 		JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISS
ISO 		GO_REF:0000024
(PMID:18172165) 		UniProt
RGD		 PMID:18172165 GO_REF:0000024 NCBI chr16:56,724,101...56,744,228
Ensembl chr16:56,724,115...56,744,226 		JBrowse link
G Exosc10 exosome component 10 involved_in ISO
IEA
IBA 		(PMID:18172165)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18172165 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:158,995,313...159,018,940
Ensembl chr 5:158,995,313...159,018,940 		JBrowse link
G Exosc4 exosome component 4 involved_in ISO
IEA 		(PMID:18172165)
GO_REF:0000107 		RGD
Ensembl		 PMID:18172165 GO_REF:0000107 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573 		JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852 		JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO
IEA 		(PMID:18172165)
GO_REF:0000107 		RGD
Ensembl		 PMID:18172165 GO_REF:0000107 NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:18172165) 		UniProt
Ensembl
RGD		 PMID:18172165 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr19:18,807,616...18,868,969
Ensembl chr19:18,807,525...18,869,537 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISS
ISO 		GO_REF:0000024
(PMID:18172165) 		UniProt
RGD		 PMID:18172165 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767
Ensembl chr 1:205,848,772...205,859,764 		JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 5:123,201,723...123,306,582
Ensembl chr 5:123,203,003...123,306,465 		JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:4,849,287...4,903,542
Ensembl chr17:4,849,283...4,903,169 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO
IEA 		(PMID:16086026)
GO_REF:0000107 		RGD
Ensembl		 PMID:16086026 GO_REF:0000107 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO
IEA 		(PMID:18172165)
GO_REF:0000107 		RGD
Ensembl		 PMID:18172165 GO_REF:0000107 NCBI chr 8:96,527,871...96,637,385
Ensembl chr 8:96,528,195...96,632,739 		JBrowse link
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpsf2 cleavage and polyadenylation specific factor 2 involved_in ISO
IEA
IBA 		(PMID:18688255)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033 		RGD
Ensembl
InterPro
GO_Central		 PMID:18688255 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921 		JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 involved_in ISO
IEA
IBA 		(PMID:18688255)
GO_REF:0000107
(PMID:18955505)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18688255 PMID:18955505 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128 		JBrowse link
G ENSRNOG00000070414 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 3:10,051,827...10,052,818 JBrowse link
G Lsm10 LSM10, U7 small nuclear RNA associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:138,365,983...138,375,856
Ensembl chr 5:138,373,119...138,377,505 		JBrowse link
G Lsm11 LSM11, U7 small nuclear RNA associated involved_in ISO
IEA 		(PMID:33230297)
GO_REF:0000107
(PMID:12975319) 		RGD
Ensembl		 PMID:12975319 PMID:33230297 GO_REF:0000107 NCBI chr10:30,367,841...30,385,956
Ensembl chr10:30,370,727...30,385,944 		JBrowse link
G Slbp stem-loop histone mRNA binding protein involved_in IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:19470752) 		GO_Central
Ensembl
RGD		 PMID:19470752 GO_REF:0000033 GO_REF:0000107 NCBI chr14:77,071,441...77,081,911
Ensembl chr14:77,071,632...77,081,906 		JBrowse link
G Slbpl stem-loop binding protein like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:26,356,478...26,363,577
Ensembl chr18:26,356,474...26,363,577 		JBrowse link
G Zfp473 zinc finger protein 473 involved_in ISO (PMID:16714279) RGD PMID:16714279 NCBI chr 1:95,222,683...95,243,328
Ensembl chr 1:95,223,433...95,243,325 		JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:9154801) RGD PMID:9154801 NCBI chr 3:54,616,616...54,626,203
Ensembl chr 3:54,616,619...54,626,203 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        macromolecule metabolic process 9981
          nucleic acid metabolic process 5283
            RNA metabolic process 4695
              mRNA metabolic process 850
                histone mRNA metabolic process 26
                  histone mRNA catabolic process + 15
                  mRNA 3'-end processing by stem-loop binding and cleavage 8
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleic acid metabolic process 5283
              RNA metabolic process 4695
                mRNA metabolic process 850
                  histone mRNA metabolic process 26
                    histone mRNA catabolic process + 15
                    mRNA 3'-end processing by stem-loop binding and cleavage 8
paths to the root