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ONTOLOGY REPORT - ANNOTATIONS


Term:methyl-CpG binding
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Accession:GO:0008327 term browser browse the term
Definition:Binding to a methylated cytosine/guanine dinucleotide.



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methyl-CpG binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeo box 1 enables ISO
IEA
ISS
(PMID:28473536)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28473536 GO_REF:0000024 GO_REF:0000107 NCBI chr18:54,472,448...54,499,799
Ensembl chr18:54,473,444...54,490,814
JBrowse link
G Cdx2 caudal type homeo box 2 enables ISO (PMID:28473536) RGD PMID:28473536 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142
JBrowse link
G Chtop chromatin target of PRMT1 enables ISO
ISS
(PMID:25284789)
GO_REF:0000024
RGD
UniProt
PMID:25284789 GO_REF:0000024 NCBI chr 2:175,981,266...175,992,854
Ensembl chr 2:175,981,271...175,992,748
JBrowse link
G Cxxc4 CXXC finger protein 4 enables ISO
IBA
ISS
(PMID:29276034)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:29276034 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:222,664,148...222,689,365
Ensembl chr 2:222,664,771...222,689,365
JBrowse link
G Cxxc5 CXXC finger protein 5 enables IBA
ISO
ISS
PMID:21873635
(PMID:29276034)
GO_REF:0000024
RGD
UniProt
PMID:29276034 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:27,427,591...27,458,579
Ensembl chr18:27,427,230...27,458,673
JBrowse link
G Dnmt1 DNA methyltransferase 1 enables IEA
ISO
GO_REF:0000107
(MGI:4830046|PMID:20573698)
Ensembl
RGD
PMID:20573698 GO_REF:0000107 MGI:4830046 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659
JBrowse link
G Erh ERH, mRNA splicing and mitosis factor enables ISO (PMID:25284789) RGD PMID:25284789 NCBI chr 6:100,280,930...100,291,449
Ensembl chr 6:100,280,930...100,291,210
JBrowse link
G Hoxb13 homeo box B13 enables ISO (PMID:28473536) RGD PMID:28473536 NCBI chr10:81,160,498...81,162,777
Ensembl chr10:81,160,498...81,162,777
JBrowse link
G Lhx4 LIM homeobox 4 enables ISO (PMID:28473536) RGD PMID:28473536 NCBI chr13:67,873,618...67,927,003
Ensembl chr13:67,877,109...67,927,003
JBrowse link
G LOC681300 similar to CXXC finger 5 enables IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:126,891,110...126,892,526
Ensembl chr  X:126,891,293...126,892,210
JBrowse link
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 enables ISO (PMID:21029866) RGD PMID:21029866 NCBI chr12:20,530,072...20,543,078
Ensembl chr12:20,530,012...20,549,536
JBrowse link
G Mbd1 methyl-CpG binding domain protein 1 enables ISO (PMID:25284789) RGD PMID:25284789 NCBI chr18:67,869,870...67,884,501
Ensembl chr18:67,869,992...67,886,554
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 enables ISO (PMID:21029866), (PMID:24307175)
(MGI:3522407|PMID:15342650)
RGD PMID:15342650 PMID:21029866 PMID:24307175 MGI:3522407 NCBI chr18:64,174,002...64,240,795
Ensembl chr18:64,174,002...64,240,794
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 enables ISO (PMID:24307175) RGD PMID:24307175 NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165
JBrowse link
G Mecp2 methyl CpG binding protein 2 enables IDA
IBA
ISO
PMID:21873635
(MGI:3522407|PMID:15342650), (MGI:3695672|PMID:17108082)
RGD PMID:15342650 PMID:17108082 PMID:12473678 PMID:21873635 MGI:3522407 MGI:3695672, RGD:1359078, RGD:13792537 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Prmt1 protein arginine methyltransferase 1 enables ISO
ISS
(PMID:25284789)
GO_REF:0000024
RGD
UniProt
PMID:25284789 GO_REF:0000024 NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345
JBrowse link
G Prmt5 protein arginine methyltransferase 5 enables ISO (PMID:25284789) RGD PMID:25284789 NCBI chr15:27,968,893...27,978,291
Ensembl chr15:27,968,910...27,978,296
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 enables ISO (PMID:29276034) RGD PMID:29276034 NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052
JBrowse link
G Tet3 tet methylcytosine dioxygenase 3 enables ISO (PMID:29276034) RGD PMID:29276034 NCBI chr 4:115,867,412...115,964,433
Ensembl chr 4:115,871,265...115,964,193
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 enables ISO
IEA
(PMID:15361834), (PMID:21029866)
GO_REF:0000107
RGD
Ensembl
PMID:15361834 PMID:21029866 GO_REF:0000107 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631
JBrowse link
G Wdr77 WD repeat domain 77 enables ISS
ISO
GO_REF:0000024
(PMID:25284789)
UniProt
RGD
PMID:25284789 GO_REF:0000024 NCBI chr 2:193,435,465...193,445,534
Ensembl chr 2:193,435,468...193,445,520
JBrowse link
G Zbtb21 zinc finger and BTB domain containing 21 enables ISO (PMID:21029866) RGD PMID:21029866 NCBI chr11:37,311,860...37,327,040
Ensembl chr11:37,312,378...37,326,996
JBrowse link
G Zbtb33 zinc finger and BTB domain containing 33 enables ISO (PMID:16354688) RGD PMID:16354688 NCBI chr  X:116,963,337...116,970,547
Ensembl chr  X:116,963,347...116,971,023
JBrowse link
G Zbtb38 zinc finger and BTB domain containing 38 enables ISO
IEA
(PMID:16354688)
GO_REF:0000107
RGD
Ensembl
PMID:16354688 GO_REF:0000107 NCBI chr 8:97,284,617...97,288,518
Ensembl chr 8:97,280,993...97,485,625
JBrowse link
G Zbtb4 zinc finger and BTB domain containing 4 enables ISO (PMID:16354688) RGD PMID:16354688 NCBI chr10:54,480,698...54,501,492
Ensembl chr10:54,485,071...54,501,492
JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 enables ISO (PMID:32744506) RGD PMID:32744506 NCBI chr12:18,880,625...18,910,713
Ensembl chr12:18,880,633...18,910,711
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19541
    binding 16792
      small molecule binding 2443
        nucleotide binding 2067
          methyl-CpG binding 26
Path 2
Term Annotations click to browse term
  molecular_function 19541
    binding 16792
      heterocyclic compound binding 5603
        nucleic acid binding 3583
          DNA binding 2141
            sequence-specific DNA binding 1482
              methyl-CpG binding 26
paths to the root