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ONTOLOGY REPORT - ANNOTATIONS

Term:intracellular mRNA localization
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Accession:GO:0008298 term browser browse the term
Definition:Any process in which mRNA is transported to, or maintained in, a specific location within the cell.
Synonyms:exact_synonym: establishment and maintenance of intracellular RNA localization;   intracellular mRNA localisation
 narrow_synonym: intracellular mRNA positioning

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intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Caprin1 cell cycle associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20861386) Ensembl
MGI		 PMID:20861386 GO_REF:0000107 NCBI chrNW_004936533:3,913,375...3,953,551
Ensembl chrNW_004936533:3,913,375...3,952,851 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12843282) Ensembl
MGI		 PMID:12843282 GO_REF:0000107 NCBI chrNW_004936490:15,251,132...15,278,264
Ensembl chrNW_004936490:15,251,110...15,278,732 		JBrowse link
G Fubp3 far upstream element binding protein 3 ISO RGD PMID:23121659 RGD:12792285 NCBI chrNW_004936487:17,586,878...17,638,028
Ensembl chrNW_004936487:17,586,833...17,638,032 		JBrowse link
G Kif5c kinesin family member 5C ISO RGD PMID:23121659 RGD:12792285 NCBI chrNW_004936469:28,282,921...28,431,638
Ensembl chrNW_004936469:28,280,095...28,431,695 		JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:13,901,066...14,000,652
Ensembl chrNW_004936489:13,901,754...13,999,983 		JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12843282) TreeGrafter
MGI		 PMID:12843282 GO_REF:0000118 NCBI chrNW_004936514:5,058,682...5,103,493
Ensembl chrNW_004936514:5,058,692...5,103,528 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936648:2,172,263...2,470,494
Ensembl chrNW_004936648:2,171,957...2,469,869 		JBrowse link
G Znf385a zinc finger protein 385A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16286649) Ensembl
MGI		 PMID:16286649 GO_REF:0000107 NCBI chrNW_004936512:11,562,635...11,585,026
Ensembl chrNW_004936512:11,561,435...11,585,402 		JBrowse link
mRNA localization resulting in post-transcriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor acts_upstream_of_or_within ISO (PMID:20541607) MGI PMID:20541607 NCBI chrNW_004936735:2,130,943...2,177,815 JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO (PMID:28063167) MGI PMID:28063167 NCBI chrNW_004936562:2,269,341...2,369,098
Ensembl chrNW_004936562:2,269,332...2,371,224 		JBrowse link
G Znf385a zinc finger protein 385A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16286649) Ensembl
MGI
TreeGrafter		 PMID:16286649 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936512:11,562,635...11,585,026
Ensembl chrNW_004936512:11,561,435...11,585,402 		JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in ISO PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chrNW_004936519:1,946,684...1,987,036
Ensembl chrNW_004936519:1,946,652...1,987,070 		JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:2,251,148...2,253,527
Ensembl chrNW_004936661:2,250,665...2,253,787 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,045,679...12,050,737
Ensembl chrNW_004936495:12,045,377...12,051,536 		JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:21471000 RGD:9999187 NCBI chrNW_004936647:478,445...520,361
Ensembl chrNW_004936647:478,443...484,570 		JBrowse link
G LOC101966195 huntingtin ISO RGD PMID:20185826 RGD:10403027 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071 		JBrowse link
G Pum2 pumilio RNA binding family member 2 ISO RGD PMID:31606248 RGD:242905203 NCBI chrNW_004936493:11,067,318...11,154,133
Ensembl chrNW_004936493:11,067,202...11,155,377 		JBrowse link
Term paths to the root