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ONTOLOGY REPORT - ANNOTATIONS

Term:intracellular mRNA localization
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Accession:GO:0008298 term browser browse the term
Definition:Any process in which mRNA is transported to, or maintained in, a specific location within the cell.
Synonyms:exact_synonym: establishment and maintenance of intracellular RNA localization;   intracellular mRNA localisation
 narrow_synonym: intracellular mRNA positioning


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intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07046707.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Caprin1 cell cycle associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4838547 (PMID:20861386)		 Ensembl
RGD		 PMID:20861386 GO_REF:0000107 NCBI chr 3:90,152,305...90,230,447
Ensembl chr 3:90,153,620...90,230,502 		JBrowse link
G Casc3 CASC3 exon junction complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:12843282)		 Ensembl
RGD		 PMID:12843282 GO_REF:0000107 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966 		JBrowse link
G Fubp3 far upstream element binding protein 3 IMP RGD PMID:23121659 RGD:12792285 NCBI chr 3:14,855,527...14,904,540
Ensembl chr 3:14,855,557...14,904,540 		JBrowse link
G Kif5c kinesin family member 5C IMP RGD PMID:23121659 RGD:12792285 NCBI chr 3:34,032,082...34,185,597
Ensembl chr 3:34,032,105...34,182,413 		JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in IEA
ISO		 GO_REF:0000107
(PMID:37379838)		 Ensembl
RGD		 PMID:37379838 GO_REF:0000107 NCBI chr 1:50,387,716...50,501,568
Ensembl chr 1:50,387,698...50,498,831 		JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:12843282)		 GO_Central
RGD		 PMID:12843282 GO_REF:0000033 NCBI chr 3:155,680,000...155,725,969
Ensembl chr 3:155,680,000...155,725,909 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:2,840,741...3,084,935
Ensembl chr 5:2,840,765...3,084,929 		JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (PMID:16286649) RGD PMID:16286649 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548 		JBrowse link
mRNA localization resulting in post-transcriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:104663 (PMID:20541607)		 Ensembl
RGD		 PMID:20541607 GO_REF:0000107 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:3051635|MGI:5570192 (PMID:28063167) RGD PMID:28063167 NCBI chr 3:77,491,195...77,593,300
Ensembl chr 3:77,491,276...77,593,264 		JBrowse link
G Zfp385a zinc finger protein 385A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3510440 (PMID:16286649)		 GO_Central
RGD		 PMID:16286649 GO_REF:0000033 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548 		JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in IMP PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS		 (PMID:17369404)
GO_REF:0000024		 RGD
UniProt		 PMID:17369404 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO
ISS		 (PMID:17369404)
GO_REF:0000024		 RGD
UniProt		 PMID:17369404 GO_REF:0000024 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B IMP RGD PMID:21471000 RGD:9999187 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344 		JBrowse link
G Htt huntingtin IMP RGD PMID:20185826 RGD:10403027 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 IMP RGD PMID:31606248 RGD:242905203 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
Term paths to the root