Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:intracellular mRNA localization
go back to main search page
Accession:GO:0008298 term browser browse the term
Definition:Any process in which mRNA is transported to, or maintained in, a specific location within the cell.
Synonyms:exact_synonym: establishment and maintenance of intracellular RNA localization;   intracellular mRNA localisation
 narrow_synonym: intracellular mRNA positioning


show annotations for term's descendants           Sort by:
intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit acts_upstream_of_or_within ISO (MGI:2683131|PMID:12843282) RGD PMID:12843282 MGI:2683131 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966 		JBrowse link
G Fubp3 far upstream element binding protein 3 IMP RGD PMID:23121659 RGD:12792285 NCBI chr 3:14,855,527...14,904,540
Ensembl chr 3:14,855,557...14,904,540 		JBrowse link
G Kif5c kinesin family member 5C IMP RGD PMID:23121659 RGD:12792285 NCBI chr 3:34,032,082...34,185,597
Ensembl chr 3:34,032,105...34,182,413 		JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:2683131|PMID:12843282)
PMID:21873635		 RGD PMID:12843282 PMID:21873635 MGI:2683131, RGD:13792537 NCBI chr 3:155,680,000...155,725,969
Ensembl chr 3:155,680,000...155,725,909 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:2,840,801...3,084,451
Ensembl chr 5:2,840,765...3,084,929 		JBrowse link
G Zfp385a zinc finger protein 385A acts_upstream_of_or_within ISO MGI:3510440 (MGI:3610775|PMID:16286649) RGD PMID:16286649 MGI:3610775 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548 		JBrowse link
mRNA localization resulting in post-transcriptional regulation of gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:104663 (MGI:4943819|PMID:20541607)		 Ensembl
RGD		 PMID:20541607 GO_REF:0000107 MGI:4943819 NCBI chr 1:229,736,037...229,823,499
Ensembl chr 1:229,736,106...229,824,354 		JBrowse link
G Ckap5 cytoskeleton associated protein 5 acts_upstream_of_or_within ISO MGI:3051635|MGI:5570192 (MGI:5823498|PMID:28063167) RGD PMID:28063167 MGI:5823498 NCBI chr 3:77,491,195...77,593,300
Ensembl chr 3:77,491,276...77,593,264 		JBrowse link
G Zfp385a zinc finger protein 385A involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3510440 (MGI:3610775|PMID:16286649)		 RGD PMID:16286649 PMID:21873635 MGI:3610775, RGD:13792537 NCBI chr 7:134,448,914...134,475,548
Ensembl chr 7:134,448,921...134,475,548 		JBrowse link
positive regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx36 DEAH-box helicase 36 involved_in IMP PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572 		JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS		 (PMID:17369404)
GO_REF:0000024		 RGD
UniProt		 PMID:17369404 GO_REF:0000024 NCBI chr 1:83,669,084...83,671,564
Ensembl chr 1:83,669,084...83,671,564 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISO
ISS		 (PMID:17369404)
GO_REF:0000024		 RGD
UniProt		 PMID:17369404 GO_REF:0000024 NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748 		JBrowse link
regulation of intracellular mRNA localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B IMP RGD PMID:21471000 RGD:9999187 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344 		JBrowse link
G Htt huntingtin IMP RGD PMID:20185826 RGD:10403027 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
Term paths to the root