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ONTOLOGY REPORT - ANNOTATIONS


Term:spermidine biosynthetic process
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Accession:GO:0008295 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms:exact_synonym: spermidine anabolism;   spermidine biosynthesis;   spermidine formation;   spermidine synthesis
 xref: MetaCyc:BSUBPOLYAMSYN-PWY;   MetaCyc:POLYAMINSYN3-PWY


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spermidine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amd1 adenosylmethionine decarboxylase 1 ISO (MGI:3584197|PMID:11856372) RGD
MGI
PMID:1415709, PMID:10430362, PMID:10712236, PMID:11856372 MGI:3584197, RGD:1578320, RGD:7242911, RGD:7242912 NCBI chrNW_004936564:6,656,789...6,675,564 JBrowse link
G Srm spermidine synthase ISO (PMID:17585781) RGD
UniProtKB
PMID:8494549, PMID:12843627, PMID:16931179, PMID:17585781 RGD:1359042, RGD:7242920, RGD:7242928 NCBI chrNW_004936474:121,135...124,894 JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase ISO (PMID:16354669) UniProtKB PMID:16354669 NCBI chrNW_004936486:19,503,631...19,511,918 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12002
    metabolic process 7668
      cellular metabolic process 7071
        cellular nitrogen compound metabolic process 4089
          cellular nitrogen compound biosynthetic process 3093
            amine biosynthetic process 31
              cellular biogenic amine biosynthetic process 31
                polyamine biosynthetic process 7
                  spermidine biosynthetic process 3
                    negative regulation of spermidine biosynthetic process 0
                    positive regulation of spermidine biosynthetic process 1
                    regulation of spermidine biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 12002
    metabolic process 7668
      organic substance metabolic process 7372
        organonitrogen compound metabolic process 4491
          amine metabolic process 98
            cellular amine metabolic process 94
              cellular biogenic amine metabolic process 81
                polyamine metabolic process 12
                  polyamine biosynthetic process 7
                    spermidine biosynthetic process 3
                      negative regulation of spermidine biosynthetic process 0
                      positive regulation of spermidine biosynthetic process 1
                      regulation of spermidine biosynthetic process + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.