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ONTOLOGY REPORT - ANNOTATIONS


Term:spermidine metabolic process
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Accession:GO:0008216 term browser browse the term
Definition:The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms:exact_synonym: spermidine metabolism


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spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhps deoxyhypusine synthase involved_in ISO (PMID:23525104) RGD PMID:23525104 NCBI chr19:26,184,665...26,188,755
Ensembl chr19:26,184,545...26,188,832
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase involved_in ISO (PMID:16354669) RGD PMID:16354669 NCBI chr 1:212,578,444...212,603,722
Ensembl chr 1:212,578,450...212,603,529
JBrowse link
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sat1 spermidine/spermine N1-acetyl transferase 1 involved_in IDA
IBA
ISO
PMID:21873635
(PMID:15283699)
RGD PMID:15283699, PMID:15541750, PMID:21873635 RGD:7244190, RGD:13792537 NCBI chr  X:43,626,480...43,629,767
Ensembl chr  X:43,625,169...43,629,765
JBrowse link
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 involved_in
NOT|involved_in
IBA
ISO
PMID:21873635
(PMID:12803540)
(PMID:15283699)
RGD PMID:12803540 PMID:15283699, PMID:21873635 RGD:13792537 NCBI chr10:56,227,703...56,229,796
Ensembl chr10:56,227,692...56,229,850
JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:160,306,754...160,321,951
Ensembl chr 5:160,306,727...160,321,066
JBrowse link
G Amd1 adenosylmethionine decarboxylase 1 acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
IMP
(MGI:3584197|PMID:11856372)
PMID:21873635
RGD PMID:11856372, PMID:10430362, PMID:21873635, PMID:1415709, PMID:10712236 MGI:3584197, RGD:1578320, RGD:13792537, RGD:7242912, RGD:7242911 NCBI chr20:45,384,000...45,399,694
Ensembl chr20:45,384,000...45,399,694
JBrowse link
G Srm spermidine synthase involved_in IDA
ISO
IBA
IMP
(PMID:17585781)
PMID:21873635
RGD PMID:17585781, PMID:12843627, PMID:21873635, PMID:8494549, PMID:16931179 RGD:1359042, RGD:13792537, RGD:7242928, RGD:7242920 NCBI chr 5:165,405,168...165,408,325
Ensembl chr 5:165,405,168...165,408,320
Ensembl chr 3:165,405,168...165,408,320
JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhps deoxyhypusine synthase IDA RGD PMID:7721768 RGD:2316236 NCBI chr19:26,184,665...26,188,755
Ensembl chr19:26,184,545...26,188,832
JBrowse link
G Paox polyamine oxidase involved_in IDA
ISO
PMID:16354669
(PMID:16354669)
RGD PMID:16354669, PMID:7560898, PMID:16354669 RGD:7244191, RGD:12790650 NCBI chr 1:212,578,444...212,603,722
Ensembl chr 1:212,578,450...212,603,529
JBrowse link
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 involved_in ISO
ISS
(PMID:28516954)
GO_REF:0000024
RGD
UniProt
PMID:28516954 GO_REF:0000024 NCBI chr 7:130,102,335...130,109,036
Ensembl chr 7:130,102,347...130,107,437
JBrowse link
G Hdac6 histone deacetylase 6 NOT|involved_in ISO (PMID:28516954) RGD PMID:28516954 NCBI chr  X:15,396,185...15,417,486
Ensembl chr  X:15,295,473...15,316,671
Ensembl chr  X:15,295,473...15,316,671
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    metabolic process 11911
      nitrogen compound metabolic process 10103
        cellular nitrogen compound metabolic process 6604
          cellular amine metabolic process 115
            cellular biogenic amine metabolic process 102
              polyamine metabolic process 18
                spermidine metabolic process 9
                  spermidine acetylation 2
                  spermidine biosynthetic process + 4
                  spermidine catabolic process 2
                  spermidine deacetylation 2
Path 2
Term Annotations click to browse term
  biological_process 19634
    metabolic process 11911
      organic substance metabolic process 11425
        organonitrogen compound metabolic process 6905
          amine metabolic process 123
            cellular amine metabolic process 115
              cellular biogenic amine metabolic process 102
                polyamine metabolic process 18
                  spermidine metabolic process 9
                    spermidine acetylation 2
                    spermidine biosynthetic process + 4
                    spermidine catabolic process 2
                    spermidine deacetylation 2
paths to the root