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ONTOLOGY REPORT - ANNOTATIONS


Term:retrograde axonal transport
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Accession:GO:0008090 term browser browse the term
Definition:The directed movement of organelles or molecules along microtubules from the cell periphery toward the cell body in nerve cell axons.
Synonyms:exact_synonym: retrograde axon cargo transport



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retrograde axonal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BFSP2 beaded filament structural protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:30,334,080...30,394,202
Ensembl chr23:29,992,021...30,396,840
JBrowse link
G BSN bassoon presynaptic cytomatrix protein involved_in ISO PMID:19380881 SynGO-UCL PMID:19380881 RGD:12793047 NCBI chr20:39,601,803...39,696,831
Ensembl chr20:39,605,117...39,642,298
JBrowse link
G DST dystonin acts_upstream_of_or_within
involved_in
ISO (MGI:2679412|PMID:14581450)
(MGI:3703204|PMID:17287360)
MGI
UniProt
PMID:14581450 PMID:17287360 MGI:2679412 MGI:3703204 NCBI chr12:23,715,637...24,195,220
Ensembl chr12:23,716,466...24,195,416
JBrowse link
G HAP1 huntingtin associated protein 1 involved_in ISO PMID:22731248
PMID:19996106
UniProt PMID:19996106 PMID:22731248 RGD:10047154 RGD:10047200 NCBI chr 9:21,065,770...21,074,462
Ensembl chr 9:21,065,846...21,072,991
JBrowse link
G MGARP mitochondria localized glutamic acid rich protein involved_in ISO (MGI:3850758|PMID:19528298) UniProt PMID:19528298 MGI:3850758 NCBI chr19:3,411,718...3,423,589
Ensembl chr19:3,411,778...3,423,330
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1928566|PMID:11163259) MGI
Ensembl
PMID:11163259 GO_REF:0000107 MGI:1928566 NCBI chr 5:33,187,614...33,244,483
Ensembl chr 5:33,204,452...33,266,052
JBrowse link
G NEFL neurofilament light chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:32,463,361...32,468,965
Ensembl chr25:32,463,452...32,467,224
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1928566|PMID:11163259) MGI
TreeGrafter
Ensembl
PMID:11163259 GO_REF:0000107 GO_REF:0000118 MGI:1928566 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400
JBrowse link
G SNAPIN SNAP associated protein acts_upstream_of_or_within ISO (MGI:4879078|PMID:20920792) MGI PMID:20920792 MGI:4879078 NCBI chr 7:43,410,554...43,411,929
Ensembl chr 7:43,410,998...43,412,323
JBrowse link
G SOD1 superoxide dismutase 1 involved_in ISO (MGI:4837328|PMID:20510358) BHF-UCL PMID:20510358 MGI:4837328 NCBI chr31:26,540,291...26,544,212
Ensembl chr31:26,486,274...26,662,815
JBrowse link
G TMEM108 transmembrane protein 108 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr23:29,992,038...30,331,791
Ensembl chr23:29,992,021...30,396,840
JBrowse link
positive regulation of retrograde axon cargo transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CALY calcyon neuron specific vesicular protein ISO RGD PMID:29949458 RGD:15097509 NCBI chr28:40,918,341...40,925,161
Ensembl chr28:40,918,343...40,925,070
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
retrograde axonal protein transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLG2 discs large MAGUK scaffold protein 2 involved_in ISO (MGI:5703671|PMID:26609151) ARUK-UCL PMID:26609151 MGI:5703671 NCBI chr21:13,796,725...15,776,601
Ensembl chr21:13,822,304...15,771,954
JBrowse link
G MAP1A microtubule associated protein 1A involved_in ISO (MGI:5703671|PMID:26609151) ARUK-UCL PMID:26609151 MGI:5703671 NCBI chr30:10,361,871...10,382,780
Ensembl chr30:10,361,909...10,381,376
JBrowse link
retrograde axonal transport of mitochondrion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR10 actin related protein 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:33,575,321...33,607,370
Ensembl chr 8:33,575,373...33,607,196
JBrowse link
G AGBL4 AGBL carboxypeptidase 4 acts_upstream_of_or_within ISO (MGI:6269036|PMID:30420556) MGI PMID:30420556 MGI:6269036 NCBI chr15:11,056,440...12,435,428
Ensembl chr15:11,056,447...12,435,448
JBrowse link
G AGTPBP1 ATP/GTP binding carboxypeptidase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:73,853,491...74,030,075
Ensembl chr 1:73,887,934...74,107,312
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964
JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476
JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:31,613,335...31,635,313
Ensembl chr 5:31,613,398...31,633,736
JBrowse link
G KIF5A kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:1,637,007...1,666,790
Ensembl chr10:1,636,932...1,664,767
JBrowse link
G KIF5B kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17874
    cellular process 16909
      microtubule-based process 1044
        microtubule-based movement 470
          transport along microtubule 177
            axo-dendritic transport 91
              axonal transport 67
                retrograde axonal transport 23
                  negative regulation of retrograde axon cargo transport + 0
                  positive regulation of retrograde axon cargo transport + 2
                  regulation of retrograde axon cargo transport + 2
                  retrograde axonal protein transport 2
                  retrograde axonal transport of mitochondrion 3
                  retrograde neuronal dense core vesicle transport + 6
                  retrograde synaptic vesicle transport 0
Path 2
Term Annotations click to browse term
  biological_process 17874
    cellular process 16909
      cellular localization 3661
        establishment of localization in cell 2149
          intracellular transport 1419
            cytoskeleton-dependent intracellular transport 211
              transport along microtubule 177
                axo-dendritic transport 91
                  axonal transport 67
                    retrograde axonal transport 23
                      negative regulation of retrograde axon cargo transport + 0
                      positive regulation of retrograde axon cargo transport + 2
                      regulation of retrograde axon cargo transport + 2
                      retrograde axonal protein transport 2
                      retrograde axonal transport of mitochondrion 3
                      retrograde neuronal dense core vesicle transport + 6
                      retrograde synaptic vesicle transport 0
paths to the root