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ONTOLOGY REPORT - ANNOTATIONS

Term:neuron recognition
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Accession:GO:0008038 term browser browse the term
Definition:The process in which a neuronal cell in a multicellular organism interprets its surroundings.
Synonyms:exact_synonym: neuronal cell recognition


show annotations for term's descendants           Sort by:
neuron recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:15844198) RGD PMID:15844198 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 IEP RGD PMID:12431218 RGD:632605 NCBI chr13:42,630,383...42,634,288
Ensembl chr13:40,077,976...40,081,883 		JBrowse link
axon choice point recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 acts_upstream_of_or_within ISO MGI:3026700 (PMID:11182083) RGD PMID:11182083 NCBI chr10:54,773,282...54,780,727
Ensembl chr10:54,274,506...54,280,471 		JBrowse link
G Gap43 growth associated protein 43 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2448337 (PMID:7859286)		 GO_Central
Ensembl
RGD		 PMID:7859286 GO_REF:0000033 GO_REF:0000107 NCBI chr11:71,882,131...71,975,799
Ensembl chr11:58,376,371...58,470,045 		JBrowse link
axon midline choice point recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G App amyloid beta precursor protein involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:2154522 (PMID:8001115)		 UniProt
RGD		 PMID:8001115 GO_REF:0000024 NCBI chr11:37,506,207...37,724,351
Ensembl chr11:24,019,778...24,236,561 		JBrowse link
G Diaph1 diaphanous-related formin 1 acts_upstream_of_or_within ISO MGI:1858500 (PMID:23890216) RGD PMID:23890216 NCBI chr18:29,920,889...30,020,280
Ensembl chr18:29,669,659...29,769,172 		JBrowse link
G Diaph2 diaphanous-related formin 2 acts_upstream_of_or_within ISO MGI:1194490 (PMID:23890216) RGD PMID:23890216 NCBI chr  X:96,700,535...97,528,080
Ensembl chr  X:92,395,251...93,229,869 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1857771 (PMID:15240555) RGD PMID:15240555 NCBI chr 6:72,401,582...72,404,392
Ensembl chr 6:66,666,587...66,678,607 		JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in IEA
ISO
IEP		 GO_REF:0000002
UniProtKB:Q7TPD3 (PMID:18986510)		 InterPro
RGD		 PMID:18986510 PMID:18986510 GO_REF:0000002, RGD:2314842 NCBI chr11:24,067,869...25,108,694
Ensembl chr11:10,580,908...11,620,203 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO UniProtKB:O89026 (PMID:18986510) RGD PMID:18986510 NCBI chr11:26,015,919...27,583,750
Ensembl chr11:12,528,951...13,041,536 		JBrowse link
G Robo3 roundabout guidance receptor 3 involved_in ISO
IEA		 (PMID:18986510)
GO_REF:0000107		 RGD
Ensembl		 PMID:18986510 GO_REF:0000107 NCBI chr 8:45,322,323...45,340,466
Ensembl chr 8:37,133,916...37,151,315 		JBrowse link
axonal fasciculation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amigo1 adhesion molecule with Ig like domain 1 involved_in IDA PMID:12629050 UniProt PMID:12629050 RGD:634626 NCBI chr 2:198,511,285...198,516,744
Ensembl chr 2:195,823,042...195,829,585 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11283609)		 UniProt
Ensembl
RGD		 PMID:11283609 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:77,202,436...77,319,298
Ensembl chr 1:77,202,436...77,319,298 		JBrowse link
G Casp3 caspase 3 IMP RGD PMID:25898930 RGD:13781947 NCBI chr16:52,395,539...52,413,794
Ensembl chr16:45,662,910...45,684,648 		JBrowse link
G Casp6 caspase 6 IMP RGD PMID:25898930 RGD:13781947 NCBI chr 2:221,140,287...221,152,727
Ensembl chr 2:218,466,076...218,478,502 		JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:10545161)		 UniProt
RGD		 PMID:10545161 GO_REF:0000024 NCBI chr10:65,981,692...65,985,831
Ensembl chr10:65,483,941...65,488,456 		JBrowse link
G Celsr3 cadherin, EGF LAG seven-pass G-type receptor 3 acts_upstream_of_or_within ISO MGI:3578665 (PMID:15778712) RGD PMID:15778712 NCBI chr 8:118,409,136...118,438,593
Ensembl chr 8:109,530,641...109,558,354 		JBrowse link
G Cnr1 cannabinoid receptor 1 acts_upstream_of_or_within ISO MGI:1857736 (PMID:20962221) RGD PMID:20962221 NCBI chr 5:53,204,867...53,230,396
Ensembl chr 5:48,408,574...48,435,099 		JBrowse link
G Cntn2 contactin 2 acts_upstream_of_or_within ISO
IEA		 MGI:2181052 (PMID:18650339)
GO_REF:0000107		 RGD
Ensembl		 PMID:18650339 GO_REF:0000107 NCBI chr13:46,497,269...46,528,112
Ensembl chr13:43,947,265...43,975,887 		JBrowse link
G Crtac1 cartilage acidic protein 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:21817055)		 GO_Central
Ensembl
RGD		 PMID:21817055 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:241,091,679...241,233,677
Ensembl chr 1:241,078,864...241,233,421 		JBrowse link
G Efna5 ephrin A5 NAS RGD PMID:7748564 RGD:728210 NCBI chr 9:109,763,786...110,042,396
Ensembl chr 9:102,320,295...102,597,413 		JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO
IEA		 (PMID:8947026)
GO_REF:0000107		 RGD
Ensembl		 PMID:8947026 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Ephb3 Eph receptor B3 involved_in ISO
IEA		 (PMID:8947026)
GO_REF:0000107		 RGD
Ensembl		 PMID:8947026 GO_REF:0000107 NCBI chr11:93,345,098...93,363,775
Ensembl chr11:79,840,668...79,859,370 		JBrowse link
G Fezf2 Fez family zinc finger 2 acts_upstream_of_or_within ISO
IEA		 MGI:3046867 (PMID:16284245)
GO_REF:0000107		 RGD
Ensembl		 PMID:16284245 GO_REF:0000107 NCBI chr15:15,199,045...15,207,982
Ensembl chr15:12,773,762...12,777,554 		JBrowse link
G L1cam L1 cell adhesion molecule IMP RGD PMID:3856258 RGD:11570517 NCBI chr  X:156,748,597...156,775,116
Ensembl chr  X:151,597,277...151,623,857 		JBrowse link
G Ncam1 neural cell adhesion molecule 1 IMP RGD PMID:3856258 RGD:11570517 NCBI chr 8:58,762,088...59,062,131
Ensembl chr 8:49,865,633...50,166,014 		JBrowse link
G Ncam2 neural cell adhesion molecule 2 IEP RGD PMID:15174086 RGD:1303997 NCBI chr11:20,104,974...20,592,168
Ensembl chr11:20,104,925...20,591,984 		JBrowse link
G Ndn necdin, MAGE family member acts_upstream_of_or_within ISO
IEA		 MGI:2653048 (PMID:15972963)
GO_REF:0000107		 RGD
Ensembl		 PMID:15972963 GO_REF:0000107 NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO
IEA		 MGI:3512099 (PMID:17428830)
GO_REF:0000107		 RGD
Ensembl		 PMID:17428830 GO_REF:0000107 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Ptprz1 protein tyrosine phosphatase, receptor type Z1 IDA RGD PMID:16150606 RGD:9590115 NCBI chr 4:52,363,006...52,560,905
Ensembl chr 4:51,397,601...51,595,218 		JBrowse link
G Rtn4 reticulon 4 involved_in IDA
ISO
IEA		 PMID:20573699
(PMID:20573699)
GO_REF:0000107		 RGD
Ensembl		 PMID:20573699 PMID:20573699 GO_REF:0000107, RGD:8554113 NCBI chr14:107,651,001...107,698,610
Ensembl chr14:103,449,930...103,497,686 		JBrowse link
G Sema3a semaphorin 3A acts_upstream_of_or_within ISO MGI:2158944 (PMID:17428830) RGD PMID:17428830 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Sema5a semaphorin 5A involved_in IDA PMID:15603739 UniProt PMID:15603739 RGD:8553809 NCBI chr 2:85,020,724...85,451,938
Ensembl chr 2:83,309,843...83,741,084 		JBrowse link
G Tnfrsf21 TNF receptor superfamily member 21 IMP RGD PMID:25898930 RGD:13781947 NCBI chr 9:25,376,400...25,451,323
Ensembl chr 9:17,879,156...17,954,085 		JBrowse link
dendrite self-avoidance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsg basigin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:10,643,788...10,651,005
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Cntn4 contactin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:140,180,696...141,177,771
Ensembl chr 4:139,099,152...139,621,090 		JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:19945391)
GO_REF:0000033
GO_REF:0000107		 UniProt
RGD
GO_Central
Ensembl		 PMID:19945391 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Dscaml1 DS cell adhesion molecule-like 1 involved_in IBA
ISO		 GO_REF:0000033
(PMID:19945391)		 GO_Central
RGD		 PMID:19945391 GO_REF:0000033 NCBI chr 8:54,637,054...54,954,042
Ensembl chr 8:45,740,298...46,057,320 		JBrowse link
G Emb embigin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:50,803,468...50,858,001
Ensembl chr 2:49,069,087...49,125,050 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21743013)
GO_REF:0000107		 RGD
Ensembl		 PMID:21743013 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Myot myotilin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:36,956,119...36,975,728
Ensembl chr18:36,705,314...36,724,841 		JBrowse link
G Nexn nexilin (F actin binding protein) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:243,846,736...243,878,268
Ensembl chr 2:241,186,790...241,218,342 		JBrowse link
G Nptn neuroplastin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:67,892,678...67,959,231
Ensembl chr 8:58,996,887...59,063,401 		JBrowse link
G Nrcam neuronal cell adhesion molecule involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:67,129,723...67,425,510
Ensembl chr 6:61,329,863...61,702,992 		JBrowse link
G Tnn tenascin N involved_in ISO (PMID:12812753) RGD PMID:12812753 NCBI chr13:74,852,586...74,919,789
Ensembl chr13:72,319,155...72,408,156 		JBrowse link
fasciculation of motor neuron axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha3 Eph receptor A3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18403711)		 UniProt
RGD		 PMID:18403711 GO_REF:0000024 NCBI chr11:14,585,041...14,920,721
Ensembl chr11:1,140,985...1,473,900 		JBrowse link
G Epha4 Eph receptor A4 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:18403711)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:18403711 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:78,815,460...78,958,139 		JBrowse link
fasciculation of sensory neuron axon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha3 Eph receptor A3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:21791286)		 UniProt
RGD		 PMID:21791286 GO_REF:0000024 NCBI chr11:14,585,041...14,920,721
Ensembl chr11:1,140,985...1,473,900 		JBrowse link
G Epha4 Eph receptor A4 involved_in ISO
IEA		 (PMID:18403711)
GO_REF:0000107		 RGD
Ensembl		 PMID:18403711 GO_REF:0000107 NCBI chr 9:86,263,982...86,406,744
Ensembl chr 9:78,815,460...78,958,139 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:24052814)
GO_REF:0000024		 Ensembl
RGD
CAFA		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:90,030,057...90,079,423
Ensembl chr 1:80,902,574...80,951,613 		JBrowse link
synaptic target recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plxnd1 plexin D1 involved_in ISO
IEA		 (PMID:22179111)
GO_REF:0000107		 RGD
Ensembl		 PMID:22179111 GO_REF:0000107 NCBI chr 4:150,675,377...150,715,706
Ensembl chr 4:149,002,784...149,043,244 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:22179111) RGD PMID:22179111 NCBI chr 4:22,239,418...22,709,907
Ensembl chr 4:21,287,982...21,494,432 		JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta involved_in IEA
ISO		 GO_REF:0000107
(PMID:22124272)		 Ensembl
RGD		 PMID:22124272 GO_REF:0000107 NCBI chr 7:69,826,404...69,848,702
Ensembl chr 7:67,940,017...67,963,668 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      cell recognition 165
        neuron recognition 50
          axon choice point recognition + 9
          axonal defasciculation + 0
          axonal fasciculation + 26
          dendrite self-avoidance 11
          synaptic target recognition + 3
Path 2
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            nervous system development 2881
              neurogenesis 2127
                generation of neurons 1820
                  neuron differentiation 1740
                    neuron development 1422
                      neuron recognition 50
                        axon choice point recognition + 9
                        axonal defasciculation + 0
                        axonal fasciculation + 26
                        dendrite self-avoidance 11
                        synaptic target recognition + 3
paths to the root