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ONTOLOGY REPORT - ANNOTATIONS


Term:transcription elongation factor complex
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Accession:GO:0008023 term browser browse the term
Definition:Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.


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transcription elongation factor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07053185.1 RGD:13792537
G Aff1 AF4/FMR2 family, member 1 JBrowse link 14 7,222,883 7,384,916 RGD:1624291
RGD:13792537
G Aff2 AF4/FMR2 family, member 2 JBrowse link X 153,539,951 154,051,022 RGD:13792537
G Aff3 AF4/FMR2 family, member 3 JBrowse link 9 44,837,979 45,291,964 RGD:13792537
G Aff4 AF4/FMR2 family, member 4 JBrowse link 10 38,692,167 38,773,021 RGD:1624291
RGD:13792537
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:1624291
RGD:1600115
G Eaf1 ELL associated factor 1 JBrowse link 16 7,588,217 7,602,966 RGD:1624291
G Eaf2 ELL associated factor 2 JBrowse link 11 66,878,658 66,923,092 RGD:1624291
RGD:1600115
G Ell elongation factor for RNA polymerase II JBrowse link 16 20,594,129 20,641,441 RGD:1624291
G Ell2 elongation factor for RNA polymerase II 2 JBrowse link 2 2,456,189 2,525,590 RGD:1624291
G Ell3 elongation factor for RNA polymerase II 3 JBrowse link 3 113,400,395 113,405,869 RGD:1624291
RGD:1600115
G Eloa elongin A JBrowse link 5 154,348,167 154,363,324 RGD:8553414
G Elof1 elongation factor 1 homolog JBrowse link 8 23,125,987 23,130,980 RGD:13792537
G Elp2 elongator acetyltransferase complex subunit 2 JBrowse link 18 16,544,515 16,581,086 RGD:1624291
RGD:13792537
G Elp4 elongator acetyltransferase complex subunit 4 JBrowse link 3 95,733,810 95,954,987 RGD:1624291
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:1624291
G Ice1 interactor of little elongation complex ELL subunit 1 JBrowse link 1 35,280,481 35,322,769 RGD:1624291
G Ice2 interactor of little elongation complex ELL subunit 2 JBrowse link 8 75,625,147 75,666,959 RGD:1624291
G LOC103690302 AF4/FMR2 family member 2 RGD:13792537
G LOC365839 similar to elongation protein 4 homolog JBrowse link 2 186,630,203 186,631,703 RGD:13792537
G LOC689396 similar to RNA polymerase II elongation factor ELL2 JBrowse link X 151,745,424 151,754,977 RGD:1600115
G Mllt1 MLLT1, super elongation complex subunit JBrowse link 9 10,110,389 10,155,305 RGD:1624291
G Mllt3 MLLT3, super elongation complex subunit JBrowse link 5 106,103,498 106,202,559 RGD:1624291
G Nufip1 nuclear FMR1 interacting protein 1 JBrowse link 15 58,171,163 58,201,888 RGD:1624291
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:13792537
G Zc3h8 zinc finger CCCH type containing 8 JBrowse link 3 121,471,836 121,488,528 RGD:1624291
Cdc73/Paf1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:1600115
RGD:13792537
RGD:1624291
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:1624291
RGD:13792537
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:1600115
RGD:1624291
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1600115
RGD:1624291
RGD:13792537
G Pex2 peroxisomal biogenesis factor 2 JBrowse link 2 98,251,756 98,269,185 RGD:1624291
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) JBrowse link 3 111,478,350 111,537,941 RGD:1624291
RGD:13792537
G Setd5 SET domain containing 5 JBrowse link 4 145,017,549 145,095,247 RGD:1624291
G Wdr61 WD repeat domain 61 JBrowse link 8 59,296,339 59,313,663 RGD:1624291
RGD:1600115
cyclin/CDK positive transcription elongation factor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:1624291
G Ccnk cyclin K JBrowse link 6 132,090,235 132,113,560 RGD:13792537
G Ccnt1 cyclin T1 JBrowse link 7 140,215,052 140,245,958 RGD:1624291
RGD:13792537
G Ccnt2 cyclin T2 JBrowse link 13 44,475,959 44,516,892 RGD:1624291
RGD:13792537
G Cdk12 cyclin-dependent kinase 12 JBrowse link 10 86,157,186 86,210,657 RGD:13792537
G Cdk13 cyclin-dependent kinase 13 JBrowse link 17 49,833,194 49,922,932 RGD:13792537
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:1624291
RGD:1600115
G LOC103692976 cyclin-T1-like JBrowse link 7 140,149,991 140,172,615 RGD:13792537
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:1600115
RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
DSIF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:1624291
RGD:13792537
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 85,437,780 85,466,854 RGD:1624291
RGD:13792537
elongin complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07002622.1 RGD:13792537
G AABR07035541.3 RGD:13792537
G AABR07044940.1 RGD:13792537
G AABR07051791.1 RGD:13792537
G AABR07051982.1 RGD:13792537
G AABR07060156.1 RGD:13792537
G AABR07068955.1 RGD:13792537
G AC119015.2 RGD:13792537
G AC119015.3 RGD:13792537
G AC132539.1 RGD:13792537
G Eloa elongin A JBrowse link 5 154,348,167 154,363,324 RGD:1600115
G Elob elongin B JBrowse link 10 13,163,032 13,168,217 RGD:1624291
RGD:13792537
RGD:1600115
G Eloc elongin C JBrowse link 5 2,042,991 2,059,357 RGD:1624291
RGD:13792537
G Epop elongin BC and polycomb repressive complex 2 associated protein JBrowse link 10 85,573,369 85,574,889 RGD:1624291
G LOC100909963 transcription elongation factor B polypeptide 2-like JBrowse link 8 3,271,922 3,272,881 RGD:13792537
G LOC103691042 transcription elongation factor B polypeptide 2 pseudogene JBrowse link 1 77,721,405 77,721,857 RGD:13792537
G LOC103691088 transcription elongation factor B polypeptide 1 pseudogene JBrowse link 12 19,254,160 19,254,590 RGD:13792537
G LOC103691783 transcription elongation factor B polypeptide 2 pseudogene JBrowse link 3 30,929,770 30,930,137 RGD:13792537
G LOC103694416 transcription elongation factor B polypeptide 1 pseudogene JBrowse link 20 27,352,167 27,352,667 RGD:13792537
G RGD1304870 similar to Tceb2 protein JBrowse link 10 76,278,747 76,281,411 RGD:13792537
G RGD1561118 similar to transcription elongation factor B (SIII), polypeptide 2 JBrowse link 10 76,274,440 76,284,458 RGD:13792537
G RGD1563055 similar to transcription elongation factor B (SIII), polypeptide 2 JBrowse link 4 60,054,126 60,054,622 RGD:13792537
G RGD1563330 similar to elongin B isoform b RGD:13792537
FACT complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mms22l MMS22-like, DNA repair protein JBrowse link 5 38,844,502 38,960,989 RGD:1624291
G Ssrp1 structure specific recognition protein 1 JBrowse link 3 72,447,516 72,457,621 RGD:13792537
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit JBrowse link 15 28,574,841 28,611,959 RGD:13792537
G Tonsl tonsoku-like, DNA repair protein JBrowse link 7 117,688,397 117,703,139 RGD:1624291
RGD:1600115
NELF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nelfa negative elongation factor complex member A JBrowse link 14 82,093,837 82,117,913 RGD:1624291
RGD:13792537
G Nelfb negative elongation factor complex member B JBrowse link 3 2,414,448 2,431,148 RGD:1624291
RGD:13792537
G Nelfcd negative elongation factor complex member C/D JBrowse link 3 172,510,840 172,527,118 RGD:1624291
RGD:13792537
G Nelfe negative elongation factor complex member E JBrowse link 20 4,530,328 4,536,085 RGD:1624291
RGD:13792537
super elongation complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aff1 AF4/FMR2 family, member 1 JBrowse link 14 7,222,883 7,384,916 RGD:13792537
G Aff2 AF4/FMR2 family, member 2 JBrowse link X 153,539,951 154,051,022 RGD:13792537
G Aff3 AF4/FMR2 family, member 3 JBrowse link 9 44,837,979 45,291,964 RGD:13792537
G Aff4 AF4/FMR2 family, member 4 JBrowse link 10 38,692,167 38,773,021 RGD:13792537
G Eaf1 ELL associated factor 1 JBrowse link 16 7,588,217 7,602,966 RGD:1600115
G Eaf2 ELL associated factor 2 JBrowse link 11 66,878,658 66,923,092 RGD:1600115
G LOC103690302 AF4/FMR2 family member 2 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20300
    protein-containing complex 6095
      transcription elongation factor complex 75
        Cdc73/Paf1 complex 8
        DSIF complex 2
        FACT complex 4
        NELF complex 4
        cyclin/CDK positive transcription elongation factor complex + 10
        elongin complex 23
        nucleoplasmic THO complex 0
        super elongation complex 7
Path 2
Term Annotations click to browse term
  cellular_component 20300
    cellular anatomical entity 19956
      organelle 12976
        intracellular organelle 12440
          intracellular membrane-bounded organelle 10250
            nucleus 6971
              nuclear lumen 4052
                nucleoplasm 3399
                  transcription elongation factor complex 75
                    Cdc73/Paf1 complex 8
                    DSIF complex 2
                    FACT complex 4
                    NELF complex 4
                    cyclin/CDK positive transcription elongation factor complex + 10
                    elongin complex 23
                    nucleoplasmic THO complex 0
                    super elongation complex 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.