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ONTOLOGY REPORT - ANNOTATIONS


Term:transcription elongation factor complex
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Accession:GO:0008023 term browser browse the term
Definition:Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation.



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transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07053185.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Aff1 AF4/FMR2 family, member 1 part_of ISO (PMID:22195968) RGD PMID:22195968 NCBI chr14:5,861,188...6,024,196
Ensembl chr14:5,863,961...6,024,729
JBrowse link
G Aff4 AF4/FMR2 family, member 4 part_of ISO (PMID:22195968) RGD PMID:22195968 NCBI chr10:37,498,825...37,579,751
Ensembl chr10:37,498,825...37,579,751
JBrowse link
G Cdk9 cyclin-dependent kinase 9 part_of ISS
ISO
GO_REF:0000024
(PMID:22195968)
UniProt
RGD
PMID:22195968 GO_REF:0000024 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
G Eaf1 ELL associated factor 1 part_of ISO
IBA
(PMID:22195968)
PMID:21873635
RGD PMID:22195968 PMID:21873635 RGD:13792537 NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071
JBrowse link
G Eaf2 ELL associated factor 2 part_of ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:22195968)
UniProt
RGD
PMID:22195968 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610
JBrowse link
G Ell elongation factor for RNA polymerase II part_of ISO (PMID:22195968), (PMID:23932780) RGD PMID:22195968 PMID:23932780 NCBI chr16:18,845,025...18,891,484
Ensembl chr16:18,843,780...18,891,118
JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 part_of ISO (PMID:22195968) RGD PMID:22195968 NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781
JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 part_of ISO
ISS
(PMID:22195968)
GO_REF:0000024
RGD
UniProt
PMID:22195968 GO_REF:0000024 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132
JBrowse link
G Eloa elongin A part_of IDA PMID:8896449 UniProt PMID:8896449 RGD:8553414 NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765
JBrowse link
G Elof1 elongation factor 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:20,645,336...20,650,888
Ensembl chr 8:20,645,336...20,650,579
JBrowse link
G Elp2 elongator acetyltransferase complex subunit 2 part_of ISO
IBA
(PMID:11714725)
PMID:21873635
RGD PMID:11714725 PMID:21873635 RGD:13792537 NCBI chr18:15,885,940...15,921,564
Ensembl chr18:15,885,934...15,921,599
JBrowse link
G Elp4 elongator acetyltransferase complex subunit 4 part_of ISO (PMID:11714725), (PMID:11818576) RGD PMID:11714725 PMID:11818576 NCBI chr 3:92,162,271...92,385,251 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor part_of ISO (PMID:9326587) RGD PMID:9326587 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Ice1 interactor of little elongation complex ELL subunit 1 part_of ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 1:32,640,372...32,682,669
Ensembl chr 1:32,640,407...32,679,898
JBrowse link
G Ice2 interactor of little elongation complex ELL subunit 2 part_of ISO (PMID:22195968), (PMID:23932780) RGD PMID:22195968 PMID:23932780 NCBI chr 8:70,043,419...70,085,217
Ensembl chr 8:70,043,424...70,084,995
JBrowse link
G LOC365839 similar to elongation protein 4 homolog part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:172,729,315...172,730,773
Ensembl chr 2:172,728,560...172,730,748
JBrowse link
G LOC689396 similar to RNA polymerase II elongation factor ELL2 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:145,878,600...145,888,249
Ensembl chr  X:145,878,614...145,887,896
JBrowse link
G Mllt1 MLLT1, super elongation complex subunit part_of ISO (PMID:22195968) RGD PMID:22195968 NCBI chr 9:1,731,077...1,775,985
Ensembl chr 9:1,731,080...1,775,970
JBrowse link
G Mllt3 MLLT3, super elongation complex subunit part_of ISO (PMID:22195968), (PMID:25417107), (PMID:27105114) RGD PMID:22195968 PMID:25417107 PMID:27105114 NCBI chr 5:102,259,075...102,515,447
Ensembl chr 5:102,260,011...102,515,361
JBrowse link
G Nufip1 nuclear FMR1 interacting protein 1 part_of ISO (PMID:15107825) RGD PMID:15107825 NCBI chr15:51,429,518...51,460,308
Ensembl chr15:51,429,549...51,460,310
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780
JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 part_of ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 3:116,176,779...116,193,752
Ensembl chr 3:116,176,798...116,193,787
JBrowse link
Cdc73/Paf1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 part_of ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:16307923), (PMID:18987311), (PMID:20178742)
UniProt
Ensembl
RGD
PMID:16307923 PMID:18987311 PMID:20178742 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component part_of ISO
IBA
(PMID:16307923), (PMID:20178742)
PMID:21873635
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
RGD PMID:16307923 PMID:20178742 PMID:27749823 PMID:21873635 MGI:6203683, RGD:13792537 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component part_of ISS
ISO
GO_REF:0000024
(PMID:16307923), (PMID:18987311), (PMID:20178742)
UniProt
RGD
PMID:16307923 PMID:18987311 PMID:20178742 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component part_of ISS
ISO
IBA
GO_REF:0000024
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
(PMID:16307923), (PMID:20178742)
PMID:21873635
UniProt
RGD
PMID:16307923 PMID:20178742 PMID:27749823 PMID:21873635 GO_REF:0000024 MGI:6203683, RGD:13792537 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
JBrowse link
G Pex2 peroxisomal biogenesis factor 2 part_of ISO (PMID:18987311) RGD PMID:18987311 NCBI chr 2:96,050,380...96,072,928
Ensembl chr 2:96,045,958...96,073,404
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) part_of IBA
ISO
PMID:21873635
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
(PMID:20178742)
RGD PMID:20178742 PMID:27749823 PMID:21873635 MGI:6203683, RGD:13792537 NCBI chr 3:106,659,363...106,718,970
Ensembl chr 3:106,659,308...106,718,970
JBrowse link
G Setd5 SET domain containing 5 part_of ISO (MGI:5812827|PMID:27864380) RGD PMID:27864380 MGI:5812827 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894
JBrowse link
G Wdr61 WD repeat domain 61 part_of ISO
ISS
(PMID:20178742)
UniProtKB:Q8JZM7 (MGI:6203683|PMID:27749823)
GO_REF:0000024
RGD
UniProt
PMID:20178742 PMID:27749823 GO_REF:0000024 MGI:6203683 NCBI chr 8:55,103,542...55,120,837
Ensembl chr 8:55,103,545...55,120,813
JBrowse link
cyclin/CDK positive transcription elongation factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 part_of ISO (MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:5500979 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539
JBrowse link
G Ccnk cyclin K part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191
JBrowse link
G Ccnt1 cyclin T1 part_of ISO
IBA
(PMID:15905409), (PMID:9499409)
PMID:21873635
RGD PMID:9499409 PMID:15905409 PMID:21873635 RGD:13792537 NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
JBrowse link
G Ccnt2 cyclin T2 part_of ISO
IBA
(PMID:9499409)
PMID:21873635
RGD PMID:9499409 PMID:21873635 RGD:13792537 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019
JBrowse link
G Cdk12 cyclin-dependent kinase 12 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
JBrowse link
G Cdk13 cyclin-dependent kinase 13 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721
JBrowse link
G Cdk9 cyclin-dependent kinase 9 part_of ISO
ISS
(PMID:15905409), (PMID:9499409)
(MGI:5500979|PMID:23752591)
GO_REF:0000024
RGD
UniProt
PMID:9499409 PMID:15905409 PMID:23752591 GO_REF:0000024 MGI:5500979 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
G Rb1 RB transcriptional corepressor 1 colocalizes_with
part_of
ISO
IEA
ISS
(PMID:12037672)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:12037672 GO_REF:0000024 GO_REF:0000107 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302
JBrowse link
G Snw1 SNW domain containing 1 colocalizes_with
part_of
ISO
IEA
(PMID:15905409)
GO_REF:0000107
RGD
Ensembl
PMID:15905409 GO_REF:0000107 NCBI chr 6:107,095,450...107,119,536
Ensembl chr 6:107,095,457...107,119,536
JBrowse link
DSIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit part_of IBA
ISO
PMID:21873635
(PMID:9450929)
RGD PMID:9450929 PMID:21873635 RGD:13792537 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831
JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit part_of IBA
ISO
PMID:21873635
(PMID:9450929)
RGD PMID:9450929 PMID:21873635 RGD:13792537 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892
JBrowse link
elongin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07035541.3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07044940.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07051791.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 3:21,021,861...21,022,169 JBrowse link
G AABR07051982.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07060156.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07068955.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC119015.2 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AC119015.3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:73,743,526...73,743,822 JBrowse link
G AC132539.1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Eloa elongin A part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765
JBrowse link
G Elob elongin B part_of IBA
ISO
IEA
PMID:21873635
(MGI:5499725|PMID:16498413)
GO_REF:0000002
RGD
InterPro
PMID:16498413 PMID:21873635 GO_REF:0000002 MGI:5499725, RGD:13792537 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635
JBrowse link
G Eloc elongin C part_of IBA
ISO
PMID:21873635
(MGI:5499725|PMID:16498413)
RGD PMID:16498413 PMID:21873635 MGI:5499725, RGD:13792537 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890
JBrowse link
G Epop elongin BC and polycomb repressive complex 2 associated protein part_of ISO (MGI:5822935|PMID:27863226), (MGI:5822936|PMID:27863225) RGD PMID:27863225 PMID:27863226 MGI:5822935 MGI:5822936 NCBI chr10:82,624,392...82,625,912
Ensembl chr10:82,624,392...82,625,912
JBrowse link
G LOC103691088 transcription elongation factor B polypeptide 1 pseudogene part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:16,989,717...16,991,140
Ensembl chr12:16,989,748...16,990,086
JBrowse link
G LOC103694416 transcription elongation factor B polypeptide 1 pseudogene part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:25,754,127...25,754,557
Ensembl chr20:25,754,169...25,754,577
JBrowse link
FACT complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mms22l MMS22-like, DNA repair protein colocalizes_with ISO (PMID:21055985) RGD PMID:21055985 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745
JBrowse link
G Ssrp1 structure specific recognition protein 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
G Tonsl tonsoku-like, DNA repair protein colocalizes_with ISO
ISS
(PMID:21055983)
GO_REF:0000024
RGD
UniProt
PMID:21055983 GO_REF:0000024 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
JBrowse link
NELF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nelfa negative elongation factor complex member A part_of ISO
IBA
(PMID:12612062)
PMID:21873635
RGD PMID:12612062 PMID:21873635 RGD:13792537 NCBI chr14:76,808,920...76,832,998
Ensembl chr14:76,808,870...76,832,994
JBrowse link
G Nelfb negative elongation factor complex member B part_of IBA
ISO
PMID:21873635
(PMID:12612062)
RGD PMID:12612062 PMID:21873635 RGD:13792537 NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403
JBrowse link
G Nelfcd negative elongation factor complex member C/D part_of ISO
IBA
(PMID:12612062)
PMID:21873635
RGD PMID:12612062 PMID:21873635 RGD:13792537 NCBI chr 3:163,213,765...163,224,886
Ensembl chr 3:163,213,762...163,224,884
JBrowse link
G Nelfe negative elongation factor complex member E part_of ISO
IBA
(PMID:12612062)
PMID:21873635
RGD PMID:12612062 PMID:21873635 RGD:13792537 NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355
JBrowse link
P-TEFb complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnt1 cyclin T1 part_of ISO (PMID:18483487), (PMID:28431135) RGD PMID:18483487 PMID:28431135 NCBI chr 7:129,687,146...129,718,082
Ensembl chr 7:129,691,209...129,717,871
JBrowse link
G Cdk9 cyclin-dependent kinase 9 part_of ISO (PMID:18483487) RGD PMID:18483487 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
super elongation complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aff1 AF4/FMR2 family, member 1 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:5,861,188...6,024,196
Ensembl chr14:5,863,961...6,024,729
JBrowse link
G Aff2 AF4/FMR2 family, member 2 NOT|part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:147,928,130...148,432,484
Ensembl chr  X:147,928,407...148,429,995
JBrowse link
G Aff3 AF4/FMR2 family, member 3 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:40,399,109...40,856,716
Ensembl chr 9:40,404,375...40,857,247
JBrowse link
G Aff4 AF4/FMR2 family, member 4 part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,498,825...37,579,751
Ensembl chr10:37,498,825...37,579,751
JBrowse link
G Eaf1 ELL associated factor 1 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071
JBrowse link
G Eaf2 ELL associated factor 2 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610
JBrowse link
G LOC103690302 AF4/FMR2 family member 2 NOT|part_of IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19896
    cellular anatomical entity 19599
      nucleoplasm 3458
        transcription elongation factor complex 67
          Cdc73/Paf1 complex 8
          DSIF complex 2
          FACT complex 4
          NELF complex 4
          cyclin/CDK positive transcription elongation factor complex + 9
          elongin complex 16
          nucleoplasmic THO complex 0
          super elongation complex 7
Path 2
Term Annotations click to browse term
  cellular_component 19896
    cellular anatomical entity 19599
      intracellular anatomical structure 14287
        intracellular organelle 12666
          intracellular membrane-bounded organelle 11161
            nucleus 7006
              nuclear lumen 3922
                nucleoplasm 3458
                  transcription elongation factor complex 67
                    Cdc73/Paf1 complex 8
                    DSIF complex 2
                    FACT complex 4
                    NELF complex 4
                    cyclin/CDK positive transcription elongation factor complex + 9
                    elongin complex 16
                    nucleoplasmic THO complex 0
                    super elongation complex 7
paths to the root