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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle
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Accession:GO:0008021 term browser browse the term
Definition:A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.
Comment:This term should not be confused with GO:0097547 'synaptic vesicle protein transport vesicle'. STVs and synaptic vesicles differ both functionally and morphologically. Functionally, STVs are transport vesicles that deliver synaptic vesicle proteins to synapses, while synaptic vesicles are responsible for transmitter release at synapses. Morphologically, synaptic vesicles are very homogeneous, while STVs are very heterogeneous in size and shape. STVs might be a precursor for synaptic vesicles.
Synonyms:narrow_synonym: docked vesicle
 xref: NIF_Subcellular:sao1071221672;   Wikipedia:Synaptic_vesicle


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synaptic vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07002683.1 RGD:13792537
G AABR07043288.1 RGD:13792537
G Adam10 ADAM metallopeptidase domain 10 JBrowse link 8 77,107,355 77,237,483 RGD:13782154
G Amph amphiphysin JBrowse link 17 48,304,324 48,562,838 RGD:1624291
RGD:13792537
G Anxa5 annexin A5 JBrowse link 2 123,162,477 123,194,730 RGD:10053658
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 JBrowse link 1 214,534,217 214,607,497 RGD:13452390
G Apba1 amyloid beta precursor protein binding family A member 1 JBrowse link 1 241,594,565 241,796,512 RGD:1600115
G Apba2 amyloid beta precursor protein binding family A member 2 JBrowse link 1 125,367,273 125,547,741 RGD:1600115
G Aph1a aph-1 homolog A, gamma secretase subunit JBrowse link 2 198,006,247 198,009,837 RGD:13702254
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:8661630
RGD:1624291
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:13702180
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 JBrowse link 10 88,914,264 88,967,736 RGD:12050113
G Atp6v0c ATPase H+ transporting V0 subunit C JBrowse link 10 13,537,031 13,543,407 RGD:2301258
G Atp6v0d1 ATPase H+ transporting V0 subunit D1 JBrowse link 19 37,481,782 37,525,762 RGD:2301259
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 JBrowse link 4 115,417,100 115,435,754 RGD:12050113
G Atp6v1g1 ATPase H+ transporting V1 subunit G1 JBrowse link 5 79,367,663 79,373,843 RGD:1624291
G Bace1 beta-secretase 1 JBrowse link 8 50,140,092 50,162,388 RGD:13782154
G Bdnf brain-derived neurotrophic factor JBrowse link 3 100,768,637 100,819,216 RGD:1600576
RGD:13792537
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:631926
RGD:13792537
G Brsk1 BR serine/threonine kinase 1 JBrowse link 1 72,701,281 72,727,061 RGD:8553864
G Bsn bassoon (presynaptic cytomatrix protein) JBrowse link 8 116,873,721 116,965,396 RGD:13792549
G Btbd8 BTB domain containing 8 JBrowse link 14 3,282,422 3,351,740 RGD:13601995
G Cadm1 cell adhesion molecule 1 JBrowse link 8 51,858,906 52,200,591 RGD:1624291
G Cadps2 calcium dependent secretion activator 2 JBrowse link 4 50,326,447 50,861,161 RGD:1624291
G Cdk16 cyclin-dependent kinase 16 JBrowse link X 1,707,285 1,718,821 RGD:8553541
RGD:13792537
RGD:1624291
RGD:1600115
G Clcn3 chloride voltage-gated channel 3 JBrowse link 16 32,448,821 32,520,649 RGD:1624291
RGD:13792537
RGD:1600115
RGD:10047235
G Clcn4 chloride voltage-gated channel 4 JBrowse link X 25,016,177 25,082,563 RGD:13792537
G Clcn5 chloride voltage-gated channel 5 JBrowse link X 16,170,585 16,196,691 RGD:13792537
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1600115
RGD:1624291
G Cops4 COP9 signalosome subunit 4 JBrowse link 14 10,718,863 10,749,134 RGD:8554353
RGD:1624291
G Cops5 COP9 signalosome subunit 5 JBrowse link 5 8,876,090 8,894,345 RGD:1624291
RGD:1600115
G Cttnbp2 cortactin binding protein 2 JBrowse link 4 42,932,897 43,096,454 RGD:632437
G Cyp19a1 cytochrome P450, family 19, subfamily a, polypeptide 1 JBrowse link 8 58,744,849 58,772,408 RGD:1600839
G Dbi diazepam binding inhibitor, acyl-CoA binding protein JBrowse link 13 36,147,667 36,156,076 RGD:8554614
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:5128868
G Dgki diacylglycerol kinase, iota JBrowse link 4 64,365,115 64,831,473 RGD:8554416
G Disc1 DISC1 scaffold protein JBrowse link 19 57,818,838 58,069,992 RGD:1624291
RGD:1600115
G Dlg4 discs large MAGUK scaffold protein 4 JBrowse link 10 56,625,845 56,655,543 RGD:1624291
RGD:1600115
G Dmxl2 Dmx-like 2 JBrowse link 8 58,932,575 59,077,788 RGD:1624291
RGD:11058596
G Dnajc5 DnaJ heat shock protein family (Hsp40) member C5 JBrowse link 3 177,012,714 177,047,787 RGD:1624291
G Dnm1 dynamin 1 JBrowse link 3 11,338,081 11,382,043 RGD:8554278
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 JBrowse link 1 259,692,020 259,818,922 RGD:9685450
G Erc1 ELKS/RAB6-interacting/CAST family member 1 JBrowse link 4 152,087,393 152,380,023 RGD:13601985
G Exoc4 exocyst complex component 4 JBrowse link 4 60,549,128 61,358,305 RGD:12050113
G Gabbr1 gamma-aminobutyric acid type B receptor subunit 1 JBrowse link 20 1,955,344 1,984,907 RGD:2315465
G Gipc1 GIPC PDZ domain containing family, member 1 JBrowse link 19 24,786,604 24,798,231 RGD:1624291
RGD:1600115
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:1600115
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 JBrowse link 10 42,441,723 42,760,200 RGD:1624291
RGD:1600115
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 JBrowse link 2 179,584,302 179,704,629 RGD:1624291
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 JBrowse link 3 2,507,745 2,534,664 RGD:1624291
RGD:1600115
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A JBrowse link 10 5,707,806 6,123,568 RGD:1624291
RGD:1600115
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B JBrowse link 4 169,541,620 170,000,216 RGD:1624291
G Hap1 huntingtin-associated protein 1 JBrowse link 10 88,257,975 88,266,210 RGD:1600115
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:5130974
G Htr7 5-hydroxytryptamine receptor 7 JBrowse link 1 254,547,964 254,671,811 RGD:6480682
G Kcnc4 potassium voltage-gated channel subfamily C member 4 JBrowse link 2 210,220,908 210,241,447 RGD:10411903
G Kcnk9 potassium two pore domain channel subfamily K member 9 JBrowse link 7 113,894,918 113,938,397 RGD:2316531
G Kif1a kinesin family member 1A JBrowse link 9 100,171,851 100,253,626 RGD:12911232
G Kif1b kinesin family member 1B JBrowse link 5 165,994,803 166,133,497 RGD:1600115
G Kif3c kinesin family member 3C JBrowse link 6 27,768,943 27,815,611 RGD:729208
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:1624291
G Lgi3 leucine-rich repeat LGI family, member 3 JBrowse link 15 52,220,578 52,227,706 RGD:1624291
RGD:1600115
G LOC100910446 syntaxin-7-like JBrowse link 1 23,542,376 23,560,911 RGD:13792537
G LOC103690878 syntaxin-3-like JBrowse link X 79,742,224 79,743,117 RGD:13792537
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:1600115
G Madd MAP-kinase activating death domain JBrowse link 3 79,960,301 80,003,023 RGD:1354686
G Marcksl1 MARCKS-like 1 JBrowse link 5 147,714,163 147,716,486 RGD:13702350
G Mff mitochondrial fission factor JBrowse link 9 88,490,280 88,518,517 RGD:12793033
G Mme membrane metallo-endopeptidase JBrowse link 2 153,799,203 153,880,910 RGD:1624291
RGD:1600115
G Mt3 metallothionein 3 JBrowse link 19 11,324,708 11,326,112 RGD:9685810
RGD:1600115
RGD:1624291
G Mtmr2 myotubularin related protein 2 JBrowse link 8 12,283,471 12,334,014 RGD:8553482
G Mylk2 myosin light chain kinase 2 JBrowse link 3 148,386,185 148,397,851 RGD:1600505
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1581734
G Ncstn nicastrin JBrowse link 13 90,451,046 90,467,256 RGD:13702254
RGD:1624291
G Ndel1 nudE neurodevelopment protein 1-like 1 JBrowse link 10 55,398,919 55,456,654 RGD:1624291
RGD:1600115
G Ngf nerve growth factor JBrowse link 2 204,886,158 204,939,523 RGD:13792537
G Npy1r neuropeptide Y receptor Y1 JBrowse link 16 24,779,480 24,789,131 RGD:1642318
G Ntf3 neurotrophin 3 JBrowse link 4 158,636,883 158,705,886 RGD:13792537
G Ntf4 neurotrophin 4 JBrowse link 1 101,405,314 101,408,145 RGD:13792537
G Pde4b phosphodiesterase 4B JBrowse link 5 121,759,236 122,136,814 RGD:1624291
RGD:1600115
G Pdyn prodynorphin JBrowse link 3 122,194,327 122,206,671 RGD:13702229
G Pebp1 phosphatidylethanolamine binding protein 1 JBrowse link 12 45,026,948 45,031,148 RGD:2302814
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:8554206
RGD:13792537
G Pick1 protein interacting with PRKCA 1 JBrowse link 7 120,465,472 120,484,824 RGD:8554504
RGD:13792537
G Ppt1 palmitoyl-protein thioesterase 1 JBrowse link 5 140,538,260 140,558,163 RGD:633701
RGD:8553248
RGD:1624291
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1599938
G Prrt2 proline-rich transmembrane protein 2 JBrowse link 1 198,451,042 198,454,998 RGD:1600115
RGD:1624291
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:13702254
G Psen2 presenilin 2 JBrowse link 13 98,513,600 98,539,347 RGD:13702254
G Ptpn5 protein tyrosine phosphatase, non-receptor type 5 JBrowse link 1 103,197,918 103,258,309 RGD:11574252
G Ptprn protein tyrosine phosphatase, receptor type, N JBrowse link 9 82,446,626 82,462,314 RGD:10402034
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:13792537
G Rab11b RAB11B, member RAS oncogene family JBrowse link 7 18,598,991 18,612,132 RGD:8554199
RGD:12050113
G Rab12 RAB12, member RAS oncogene family JBrowse link 9 114,683,985 114,709,613 RGD:13792537
G Rab13 RAB13, member RAS oncogene family JBrowse link 2 189,581,209 189,586,358 RGD:13792537
G Rab15 RAB15, member RAS oncogene family JBrowse link 6 99,845,952 99,870,320 RGD:13792537
G Rab3a RAB3A, member RAS oncogene family JBrowse link 16 20,435,098 20,439,206 RGD:2306269
RGD:14397552
RGD:13792537
RGD:1624291
RGD:12050113
RGD:8693376
G Rab3b RAB3B, member RAS oncogene family JBrowse link 5 128,501,789 128,568,170 RGD:1624291
RGD:13792537
G Rab3c RAB3C, member RAS oncogene family JBrowse link 2 41,570,955 41,786,681 RGD:1624291
RGD:13792537
G Rab3d RAB3D, member RAS oncogene family JBrowse link 8 22,920,238 22,929,368 RGD:13792537
G Rab40b Rab40b, member RAS oncogene family JBrowse link 10 110,557,798 110,585,424 RGD:13792537
G Rab40c Rab40c, member RAS oncogene family JBrowse link 10 15,247,913 15,283,111 RGD:13792537
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:2306269
RGD:13792537
RGD:12050113
G Rab5al1 Rab5a, member RAS oncogene family-like 1 JBrowse link 14 72,889,022 72,891,156 RGD:2306269
RGD:13792537
RGD:12050113
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:13792537
G Rab8b RAB8B, member RAS oncogene family JBrowse link 8 72,641,680 72,714,646 RGD:13792537
G Rabac1 Rab acceptor 1 JBrowse link 1 81,843,667 81,846,765 RGD:1600115
G Rnf112 ring finger protein 112 JBrowse link 10 47,719,034 47,726,050 RGD:1600115
RGD:1624291
G Rogdi rogdi atypical leucine zipper JBrowse link 10 10,761,477 10,766,096 RGD:1600115
G Rph3a rabphilin 3A JBrowse link 12 41,073,296 41,149,799 RGD:2314877
RGD:14397552
RGD:2314902
G Scamp5 secretory carrier membrane protein 5 JBrowse link 8 62,221,820 62,266,269 RGD:68303
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:12050113
G Septin1 septin 1 JBrowse link 1 198,658,744 198,662,610 RGD:13792537
G Septin4 septin 4 JBrowse link 10 74,860,068 74,884,196 RGD:13792537
G Septin5 septin 5 JBrowse link 11 86,516,377 86,522,169 RGD:1302866
RGD:13792537
RGD:1600115
RGD:1624291
G Septin6 septin 6 JBrowse link X 123,524,954 123,601,214 RGD:1624291
RGD:1600115
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 JBrowse link 2 250,709,812 250,744,216 RGD:13504749
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:12880019
G Slc17a6 solute carrier family 17 member 6 JBrowse link 1 106,980,463 107,038,717 RGD:628484
RGD:2324694
RGD:9999204
RGD:1624291
G Slc17a7 solute carrier family 17 member 7 JBrowse link 1 101,161,265 101,172,292 RGD:1624291
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:1624291
G Slc18a2 solute carrier family 18 member A2 JBrowse link 1 280,397,831 280,457,968 RGD:2317337
RGD:5128868
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:2317428
G Slc2a8 solute carrier family 2 member 8 JBrowse link 3 12,020,227 12,029,920 RGD:70577
G Slc30a3 solute carrier family 30 member 3 JBrowse link 6 26,629,752 26,650,106 RGD:1624291
RGD:1600115
G Slc32a1 solute carrier family 32 member 1 JBrowse link 3 155,102,980 155,107,815 RGD:2324694
RGD:10047235
RGD:9999204
G Slc40a1 solute carrier family 40 member 1 JBrowse link 9 52,819,451 52,830,461 RGD:1624291
G Slc5a7 solute carrier family 5 member 7 JBrowse link 9 5,294,377 5,330,822 RGD:9999388
G Slc6a17 solute carrier family 6 member 17 JBrowse link 2 210,249,663 210,299,770 RGD:8553691
RGD:13792537
RGD:8554196
G Snap25 synaptosome associated protein 25 JBrowse link 3 129,697,408 129,788,417 RGD:1624291
RGD:1600115
G Snap91 synaptosome associated protein 91 JBrowse link 8 94,447,558 94,564,772 RGD:8554206
RGD:13792537
G Snapin SNAP-associated protein JBrowse link 2 189,878,159 189,880,743 RGD:1624291
RGD:13792537
RGD:13702160
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:2291826
G Sphk1 sphingosine kinase 1 JBrowse link 10 105,498,728 105,504,401 RGD:2311366
G Sptbn2 spectrin, beta, non-erythrocytic 2 JBrowse link 1 219,964,429 220,006,811 RGD:70020
G Ston2 stonin 2 JBrowse link 6 115,398,586 115,547,552 RGD:1624291
RGD:1600115
G Stx11 syntaxin 11 JBrowse link 1 7,039,160 7,064,870 RGD:13792537
G Stx12 syntaxin 12 JBrowse link 5 151,044,050 151,072,893 RGD:12050113
RGD:13792537
G Stx1a syntaxin 1A JBrowse link 12 24,682,050 24,710,002 RGD:1624291
RGD:13792537
G Stx2 syntaxin 2 JBrowse link 12 31,324,203 31,360,249 RGD:13792537
G Stx3 syntaxin 3 JBrowse link 1 228,137,781 228,195,004 RGD:1624291
RGD:13792537
G Stx4 syntaxin 4 JBrowse link 1 199,287,384 199,295,606 RGD:13792537
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:12050113
RGD:13792537
G Stx7 syntaxin 7 JBrowse link 1 22,241,655 22,281,850 RGD:13792537
G Stxbp5 syntaxin binding protein 5 JBrowse link 1 3,858,917 4,011,684 RGD:12050113
G Sv2a synaptic vesicle glycoprotein 2a JBrowse link 2 198,321,100 198,336,889 RGD:12050113
RGD:1624291
G Sv2b synaptic vesicle glycoprotein 2b JBrowse link 1 136,664,199 136,842,247 RGD:634183
RGD:1624291
G Sv2c synaptic vesicle glycoprotein 2c JBrowse link 2 26,495,757 26,707,691 RGD:634114
RGD:1624291
G Svop SV2 related protein JBrowse link 12 48,292,272 48,351,974 RGD:634114
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:8553593
RGD:12050113
G Syn2 synapsin II JBrowse link 4 147,037,179 147,195,096 RGD:70028
RGD:8553593
G Syn3 synapsin III JBrowse link 7 23,403,896 23,808,602 RGD:8553593
G Syngr1 synaptogyrin 1 JBrowse link 7 121,311,008 121,334,437 RGD:8554439
G Syngr2 synaptogyrin 2 JBrowse link 10 106,812,740 106,816,675 RGD:1624291
RGD:634131
RGD:1600115
G Syngr3 synaptogyrin 3 JBrowse link 10 14,051,413 14,056,169 RGD:1624291
G Synpr synaptoporin JBrowse link 15 14,558,613 14,885,790 RGD:1600115
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:8554439
RGD:1624291
RGD:12050136
RGD:634537
G Syt1 synaptotagmin 1 JBrowse link 7 50,084,063 50,638,996 RGD:8553826
RGD:1624291
RGD:12050113
G Syt11 synaptotagmin 11 JBrowse link 2 188,112,301 188,138,180 RGD:11079184
RGD:1624291
RGD:1600115
G Syt12 synaptotagmin 12 JBrowse link 1 219,690,013 219,719,359 RGD:10047304
RGD:1624291
G Syt2 synaptotagmin 2 JBrowse link 13 51,569,248 51,577,824 RGD:1600115
G Syt4 synaptotagmin 4 JBrowse link 18 24,172,580 24,181,989 RGD:730180
RGD:1624291
RGD:11535095
G Syt7 synaptotagmin 7 JBrowse link 1 226,435,816 226,498,008 RGD:1624291
RGD:13792537
RGD:1600115
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1580025
RGD:5128868
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:1624291
RGD:1600115
G Tmem230 transmembrane protein 230 JBrowse link 3 124,870,867 124,879,274 RGD:1624291
RGD:1600115
G Tor1a torsin family 1, member A JBrowse link 3 9,800,322 9,807,318 RGD:8554353
RGD:1624291
G Tprg1l tumor protein p63 regulated 1-like JBrowse link 5 171,456,299 171,459,488 RGD:8554155
RGD:13792549
RGD:13792537
G Trappc4 trafficking protein particle complex 4 JBrowse link 8 48,723,755 48,727,182 RGD:1600115
RGD:1624291
G Trim9 tripartite motif-containing 9 JBrowse link 6 92,660,026 92,760,036 RGD:631246
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:634537
RGD:12050113
RGD:1624291
G Vamp4 vesicle-associated membrane protein 4 JBrowse link 13 80,460,699 80,483,597 RGD:12050136
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:12050113
G Vdac1 voltage-dependent anion channel 1 JBrowse link 10 37,724,915 37,752,827 RGD:10003050
G Vdac2 voltage-dependent anion channel 2 JBrowse link 15 2,634,622 2,648,548 RGD:10003050
G Vdac3 voltage-dependent anion channel 3 JBrowse link 16 74,292,466 74,308,910 RGD:10003050
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:12050113
G Vps45 vacuolar protein sorting 45 homolog JBrowse link 2 198,123,747 198,184,739 RGD:13702180
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:634537
G Vti1a_v1 vesicle transport through interaction with t-SNAREs 1A, variant 1 RGD:634537
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:634537
G Wdr7 WD repeat domain 7 JBrowse link 18 59,096,636 59,396,312 RGD:1354686
anchored component of synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cplx3 complexin 3 JBrowse link 8 62,379,502 62,386,264 RGD:1600115
RGD:1624291
G Dnajc5 DnaJ heat shock protein family (Hsp40) member C5 JBrowse link 3 177,012,714 177,047,787 RGD:13702369
RGD:632551
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:13432355
G Rab11b RAB11B, member RAS oncogene family JBrowse link 7 18,598,991 18,612,132 RGD:12050113
RGD:13432355
G Rab14 RAB14, member RAS oncogene family JBrowse link 3 14,373,270 14,395,357 RGD:13432355
G Rab26 RAB26, member RAS oncogene family JBrowse link 10 13,894,271 13,898,578 RGD:1600115
RGD:1624291
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:13432355
G Rab2a RAB2A, member RAS oncogene family JBrowse link 5 21,632,654 21,696,721 RGD:13432355
G Rab35 RAB35, member RAS oncogene family JBrowse link 12 46,704,274 46,718,404 RGD:13432355
G Rab3a RAB3A, member RAS oncogene family JBrowse link 16 20,435,098 20,439,206 RGD:12050113
RGD:13792537
RGD:1624291
RGD:13432355
G Rab3b RAB3B, member RAS oncogene family JBrowse link 5 128,501,789 128,568,170 RGD:13432355
RGD:1624291
RGD:12050113
G Rab3c RAB3C, member RAS oncogene family JBrowse link 2 41,570,955 41,786,681 RGD:13702220
G Rab4a RAB4A, member RAS oncogene family JBrowse link 19 56,585,598 56,613,078 RGD:13432355
G Rab4b RAB4B, member RAS oncogene family JBrowse link 1 83,979,298 83,990,680 RGD:13432355
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:12050113
RGD:13432355
RGD:13792537
G Rab5al1 Rab5a, member RAS oncogene family-like 1 JBrowse link 14 72,889,022 72,891,156 RGD:12050113
RGD:13432355
RGD:13792537
G Rab5b RAB5B, member RAS oncogene family JBrowse link 7 3,104,530 3,123,384 RGD:13432355
G Rab5c RAB5C, member RAS oncogene family JBrowse link 10 88,621,924 88,645,364 RGD:13432355
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
RGD:13432355
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:12050113
extrinsic component of synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amph amphiphysin JBrowse link 17 48,304,324 48,562,838 RGD:13702221
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 JBrowse link 4 115,417,100 115,435,754 RGD:12050113
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:631926
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:13702292
G Doc2a double C2 domain alpha JBrowse link 1 198,282,828 198,288,611 RGD:1357915
G Rph3a rabphilin 3A JBrowse link 12 41,073,296 41,149,799 RGD:12050113
RGD:13702383
G Sgta small glutamine rich tetratricopeptide repeat containing alpha JBrowse link 7 11,521,949 11,538,691 RGD:13702369
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:13702180
RGD:13702282
G Syn2 synapsin II JBrowse link 4 147,037,179 147,195,096 RGD:13702354
RGD:13702180
G Syn3 synapsin III JBrowse link 7 23,403,896 23,808,602 RGD:13702180
RGD:13702156
integral component of synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 JBrowse link 10 88,914,264 88,967,736 RGD:12050113
G Atp6v1g2 ATPase H+ transporting V1 subunit G2 JBrowse link 20 4,821,265 4,824,829 RGD:1624291
RGD:1600115
G Atp8a1 ATPase phospholipid transporting 8A1 JBrowse link 14 41,972,398 42,210,555 RGD:13702180
G Clcn3 chloride voltage-gated channel 3 JBrowse link 16 32,448,821 32,520,649 RGD:1624291
G Gabra2 gamma-aminobutyric acid type A receptor alpha2 subunit JBrowse link 14 39,662,411 39,801,082 RGD:1624291
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:12050113
G Mal2 mal, T-cell differentiation protein 2 JBrowse link 7 94,130,852 94,163,649 RGD:13702398
G Oprd1 opioid receptor, delta 1 JBrowse link 5 150,288,126 150,323,063 RGD:13702250
G Oprk1 opioid receptor, kappa 1 JBrowse link 5 13,742,655 13,760,460 RGD:13702363
G Ptprn2 protein tyrosine phosphatase, receptor type N2 JBrowse link 6 144,384,773 145,133,042 RGD:13702180
G Ptprs protein tyrosine phosphatase, receptor type, S JBrowse link 9 10,585,360 10,646,205 RGD:12790648
G Scamp1 secretory carrier membrane protein 1 JBrowse link 2 23,858,021 23,941,128 RGD:68303
RGD:69975
G Scamp5 secretory carrier membrane protein 5 JBrowse link 8 62,221,820 62,266,269 RGD:68303
G Slc10a4 solute carrier family 10, member 4 JBrowse link 14 37,764,839 37,770,059 RGD:1624291
RGD:1600115
G Slc17a6 solute carrier family 17 member 6 JBrowse link 1 106,980,463 107,038,717 RGD:9999204
RGD:13792537
G Slc17a7 solute carrier family 17 member 7 JBrowse link 1 101,161,265 101,172,292 RGD:9999204
RGD:13792537
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:1624291
RGD:13792537
G Slc18a2 solute carrier family 18 member A2 JBrowse link 1 280,397,831 280,457,968 RGD:13702244
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:13702155
RGD:13702308
G Slc30a3 solute carrier family 30 member 3 JBrowse link 6 26,629,752 26,650,106 RGD:1600115
RGD:1624291
G Slc32a1 solute carrier family 32 member 1 JBrowse link 3 155,102,980 155,107,815 RGD:9999204
RGD:13792537
RGD:13702256
G Slc6a17 solute carrier family 6 member 17 JBrowse link 2 210,249,663 210,299,770 RGD:13702218
G Slc6a7 solute carrier family 6 member 7 JBrowse link 18 56,305,765 56,325,179 RGD:13702417
G Slc6a9 solute carrier family 6 member 9 JBrowse link 5 136,669,674 136,703,702 RGD:13702299
G Stx12 syntaxin 12 JBrowse link 5 151,044,050 151,072,893 RGD:12050113
RGD:13792537
RGD:12050136
G Stx16 syntaxin 16 JBrowse link 3 172,154,739 172,183,699 RGD:12050113
G Stx1a syntaxin 1A JBrowse link 12 24,682,050 24,710,002 RGD:13702228
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:12050113
RGD:13792537
RGD:12050136
G Stx7 syntaxin 7 JBrowse link 1 22,241,655 22,281,850 RGD:12050113
G Sv2a synaptic vesicle glycoprotein 2a JBrowse link 2 198,321,100 198,336,889 RGD:12050113
RGD:13702180
G Sv2b synaptic vesicle glycoprotein 2b JBrowse link 1 136,664,199 136,842,247 RGD:13702180
G Sv2c synaptic vesicle glycoprotein 2c JBrowse link 2 26,495,757 26,707,691 RGD:13702180
G Syngr1 synaptogyrin 1 JBrowse link 7 121,311,008 121,334,437 RGD:12050113
G Synpr synaptoporin JBrowse link 15 14,558,613 14,885,790 RGD:13702286
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:730209
RGD:13702387
RGD:12050136
G Sypl1 synaptophysin-like 1 JBrowse link 6 52,265,920 52,286,037 RGD:12050113
G Syt1 synaptotagmin 1 JBrowse link 7 50,084,063 50,638,996 RGD:12050113
RGD:13702422
G Syt11 synaptotagmin 11 JBrowse link 2 188,112,301 188,138,180 RGD:11079184
G Syt2 synaptotagmin 2 JBrowse link 13 51,569,248 51,577,824 RGD:13702259
G Syt9 synaptotagmin 9 JBrowse link 1 171,592,703 171,769,780 RGD:1600115
RGD:1624291
G Tmem163 transmembrane protein 163 JBrowse link 13 44,166,306 44,345,735 RGD:8553964
RGD:1624291
G Vamp1 vesicle-associated membrane protein 1 JBrowse link 4 157,726,941 157,733,644 RGD:13702405
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:12050113
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:12050113
G Vamp4 vesicle-associated membrane protein 4 JBrowse link 13 80,460,699 80,483,597 RGD:12050136
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:12050113
RGD:13702238
G Wfs1 wolframin ER transmembrane glycoprotein JBrowse link 14 78,640,707 78,665,224 RGD:12050113
synaptic vesicle lumen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Penk proenkephalin JBrowse link 5 17,056,412 17,061,762 RGD:13702175
synaptic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc8 ATP binding cassette subfamily C member 8 JBrowse link 1 102,110,708 102,191,287 RGD:1549870
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:12793033
G Borcs5 BLOC-1 related complex subunit 5 JBrowse link 4 168,396,034 168,466,968 RGD:13792537
G Bsn bassoon (presynaptic cytomatrix protein) JBrowse link 8 116,873,721 116,965,396 RGD:1600115
G Calm1 calmodulin 1 JBrowse link 6 124,217,241 124,225,292 RGD:12793033
G Calm2 calmodulin 2 JBrowse link 6 11,067,675 11,080,078 RGD:12793033
G Calm3 calmodulin 3 JBrowse link 1 78,844,520 78,851,628 RGD:12793033
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:12793033
RGD:13792537
RGD:13702292
G Cltb clathrin, light chain B JBrowse link 17 10,537,348 10,554,999 RGD:13702292
RGD:13792537
G Dmd dystrophin JBrowse link X 51,149,358 53,519,271 RGD:12880362
G Dnm1l dynamin 1-like JBrowse link 11 88,830,968 88,882,271 RGD:12793033
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:2311574
RGD:13792537
G Drd3 dopamine receptor D3 JBrowse link 11 61,819,102 61,883,223 RGD:13792537
G Dtnbp1 dystrobrevin binding protein 1 JBrowse link 17 20,090,136 20,182,332 RGD:8554107
RGD:1600115
RGD:1624291
G Gad2 glutamate decarboxylase 2 JBrowse link 17 89,171,576 89,234,770 RGD:1625237
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 JBrowse link 2 179,584,302 179,704,629 RGD:728773
G Ica1 islet cell autoantigen 1 JBrowse link 4 34,635,509 34,780,187 RGD:1600115
RGD:1624291
G Lamp5 lysosomal-associated membrane protein family, member 5 JBrowse link 3 129,012,677 129,031,522 RGD:1600115
G LOC102556337 mitochondrial fission factor-like JBrowse link 9 90,880,586 90,908,848 RGD:12793033
G LOC500460 similar to olfactory receptor Olr841 JBrowse link 5 64,614,755 64,615,714 RGD:13792537
G Mctp1 multiple C2 and transmembrane domain containing 1 JBrowse link 2 3,400,883 4,089,949 RGD:13210552
RGD:13792537
G Mctp2 multiple C2 and transmembrane domain containing 2 JBrowse link 1 133,324,881 133,559,644 RGD:13792537
G Mff mitochondrial fission factor JBrowse link 9 88,490,280 88,518,517 RGD:12793033
G Olr1257 olfactory receptor 1257 JBrowse link 8 42,429,993 42,430,928 RGD:13792537
G Olr1320 olfactory receptor 1320 JBrowse link 8 43,628,182 43,629,120 RGD:13792537
G Olr533 olfactory receptor 533 JBrowse link 3 74,574,075 74,575,010 RGD:13792537
G Olr841 olfactory receptor 841 JBrowse link 5 64,621,407 64,622,359 RGD:13792537
G Otof otoferlin JBrowse link 6 27,328,343 27,424,864 RGD:1624291
RGD:1600115
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha JBrowse link 1 261,337,594 261,362,509 RGD:2306405
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:10413884
G Prrt2 proline-rich transmembrane protein 2 JBrowse link 1 198,451,042 198,454,998 RGD:1600115
G Ptprn2 protein tyrosine phosphatase, receptor type N2 JBrowse link 6 144,384,773 145,133,042 RGD:1624291
RGD:1600115
G RGD621098 similar to RIKEN cDNA D230025D16Rik JBrowse link 19 37,179,850 37,207,714 RGD:1302287
RGD:13792537
G Rph3a rabphilin 3A JBrowse link 12 41,073,296 41,149,799 RGD:729719
G Scamp1 secretory carrier membrane protein 1 JBrowse link 2 23,858,021 23,941,128 RGD:1624291
RGD:1600115
G Sema4c semaphorin 4C JBrowse link 9 43,129,413 43,140,442 RGD:1624291
RGD:1600115
G Septin8 septin 8 JBrowse link 10 38,877,422 38,906,480 RGD:1600115
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 JBrowse link 5 103,479,767 103,654,507 RGD:10047209
G Slc17a6 solute carrier family 17 member 6 JBrowse link 1 106,980,463 107,038,717 RGD:13792537
G Slc17a7 solute carrier family 17 member 7 JBrowse link 1 101,161,265 101,172,292 RGD:1624291
RGD:13792537
RGD:9999204
G Slc17a8 solute carrier family 17 member 8 JBrowse link 7 30,215,231 30,274,993 RGD:1624291
RGD:13792537
G Slc18a1 solute carrier family 18 member A1 JBrowse link 16 22,358,646 22,395,183 RGD:13792537
G Slc18a2 solute carrier family 18 member A2 JBrowse link 1 280,397,831 280,457,968 RGD:5130996
RGD:13792537
G Slc2a3 solute carrier family 2 member 3 JBrowse link 4 155,549,991 155,626,018 RGD:1642814
G Slc30a3 solute carrier family 30 member 3 JBrowse link 6 26,629,752 26,650,106 RGD:1624291
G Slc9b2 solute carrier family 9 member B2 JBrowse link 2 240,485,254 240,519,166 RGD:1624291
RGD:1600115
G Snap47 synaptosome associated protein 47 JBrowse link 10 45,757,196 45,798,734 RGD:1624291
RGD:1600115
G Snapin SNAP-associated protein JBrowse link 2 189,878,159 189,880,743 RGD:1600115
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1600115
RGD:1624291
G Stx1a syntaxin 1A JBrowse link 12 24,682,050 24,710,002 RGD:1624291
RGD:1549870
G Sv2a synaptic vesicle glycoprotein 2a JBrowse link 2 198,321,100 198,336,889 RGD:634182
RGD:13792537
G Sv2b synaptic vesicle glycoprotein 2b JBrowse link 1 136,664,199 136,842,247 RGD:13792537
G Sv2c synaptic vesicle glycoprotein 2c JBrowse link 2 26,495,757 26,707,691 RGD:13792537
G Svop SV2 related protein JBrowse link 12 48,292,272 48,351,974 RGD:1600115
G Syn1 synapsin I JBrowse link X 1,321,315 1,379,202 RGD:1624291
RGD:13792537
G Syn2 synapsin II JBrowse link 4 147,037,179 147,195,096 RGD:1624291
RGD:13792537
RGD:1600115
G Syn3 synapsin III JBrowse link 7 23,403,896 23,808,602 RGD:1624291
RGD:13792537
RGD:1600115
G Syngr1 synaptogyrin 1 JBrowse link 7 121,311,008 121,334,437 RGD:70030
RGD:13792537
G Syngr2 synaptogyrin 2 JBrowse link 10 106,812,740 106,816,675 RGD:8554439
RGD:13792537
G Syngr3 synaptogyrin 3 JBrowse link 10 14,051,413 14,056,169 RGD:13792537
G Syngr4 synaptogyrin 4 JBrowse link 1 101,872,541 101,883,897 RGD:13792537
G Synpr synaptoporin JBrowse link 15 14,558,613 14,885,790 RGD:1302376
RGD:13792537
G Syp synaptophysin JBrowse link X 15,694,699 15,709,244 RGD:1600115
RGD:13792537
RGD:1624291
RGD:12793033
G Sypl1 synaptophysin-like 1 JBrowse link 6 52,265,920 52,286,037 RGD:13792537
G Sypl2 synaptophysin-like 2 JBrowse link 2 211,003,046 211,017,778 RGD:13792537
G Syt1 synaptotagmin 1 JBrowse link 7 50,084,063 50,638,996 RGD:729959
RGD:13792537
RGD:12793033
RGD:1624291
G Syt12 synaptotagmin 12 JBrowse link 1 219,690,013 219,719,359 RGD:1600115
G Syt2 synaptotagmin 2 JBrowse link 13 51,569,248 51,577,824 RGD:729949
RGD:13792537
G Syt4 synaptotagmin 4 JBrowse link 18 24,172,580 24,181,989 RGD:1600115
G Syt5 synaptotagmin 5 JBrowse link 1 72,859,806 72,867,934 RGD:13792537
G Syt6 synaptotagmin 6 JBrowse link 2 206,064,181 206,119,034 RGD:1600115
G Syt7 synaptotagmin 7 JBrowse link 1 226,435,816 226,498,008 RGD:1600115
G Syt8 synaptotagmin 8 JBrowse link 1 215,605,408 215,607,602 RGD:13792537
G Tprg1l tumor protein p63 regulated 1-like JBrowse link 5 171,456,299 171,459,488 RGD:1600115
G Trpm7 transient receptor potential cation channel, subfamily M, member 7 JBrowse link 3 119,258,189 119,347,084 RGD:5684965
G Unc13a unc-13 homolog A JBrowse link 16 20,056,398 20,103,951 RGD:13792537
G Unc13b unc-13 homolog B JBrowse link 5 58,505,449 58,714,396 RGD:13792537
G Unc13c unc-13 homolog C JBrowse link 8 80,202,736 80,656,363 RGD:11535093
RGD:13792537
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:634537
RGD:1624291
RGD:12793033
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19644
    cellular anatomical entity 19270
      presynapse 669
        synaptic vesicle 259
          synaptic vesicle lumen 1
          synaptic vesicle membrane + 134
          synaptic vesicle, readily releasable pool 0
          synaptic vesicle, recycling pool 0
          synaptic vesicle, resting pool 0
Path 2
Term Annotations click to browse term
  cellular_component 19644
    cellular anatomical entity 19270
      organelle 12422
        membrane-bounded organelle 10803
          vesicle 1929
            intracellular vesicle 1786
              cytoplasmic vesicle 1781
                secretory vesicle 645
                  exocytic vesicle 311
                    synaptic vesicle 259
                      synaptic vesicle lumen 1
                      synaptic vesicle membrane + 134
                      synaptic vesicle, readily releasable pool 0
                      synaptic vesicle, recycling pool 0
                      synaptic vesicle, resting pool 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.