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ONTOLOGY REPORT - ANNOTATIONS

Term:phototransduction
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Accession:GO:0007602 term browser browse the term
Definition:The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
Synonyms:narrow_synonym: phototransduction, visible light, light adaptation;   phototrophin mediated phototransduction
 related_synonym: opsin
 xref: Wikipedia:Visual_phototransduction


show annotations for term's descendants           Sort by:
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB1 arrestin beta 1 acts_upstream_of_or_within ISO (PMID:11853756) MGI PMID:11853756 NCBI chr11:75,260,122...75,351,661
Ensembl chr11:75,260,122...75,351,705 		JBrowse link
G ASIC2 acid sensing ion channel subunit 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:33,013,087...34,156,768
Ensembl chr17:33,013,087...34,174,964 		JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:67,452,403...67,461,752
Ensembl chr11:67,452,406...67,461,752 		JBrowse link
G CDS1 CDP-diacylglycerol synthase 1 involved_in NAS (PMID:9806839) UniProt PMID:9806839 NCBI chr 4:84,583,127...84,651,334
Ensembl chr 4:84,583,127...84,651,334 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within 		NAS
IEA 		(PMID:2534964) UniProt
Ensembl		 PMID:2534964 GO_REF:0000107 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:93,906,567...93,911,265
Ensembl chr 7:93,591,573...93,911,265 		JBrowse link
G GNGT2 G protein subunit gamma transducin 2 involved_in NAS (PMID:9286705) UniProt PMID:9286705 NCBI chr17:49,206,234...49,210,574
Ensembl chr17:49,202,791...49,210,574 		JBrowse link
G GPR52 G protein-coupled receptor 52 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:174,447,964...174,449,545
Ensembl chr 1:174,447,964...174,449,545 		JBrowse link
G GPR88 G protein-coupled receptor 88 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:100,538,139...100,542,021
Ensembl chr 1:100,538,139...100,542,021 		JBrowse link
G GUCA1A guanylate cyclase activator 1A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:42,173,364...42,180,056
Ensembl chr 6:42,173,364...42,181,338 		JBrowse link
G GUCA1ANB-GUCA1A GUCA1ANB-GUCA1A readthrough acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:42,155,406...42,180,056
Ensembl chr 6:42,155,406...42,180,056 		JBrowse link
G GUCA1B guanylate cyclase activator 1B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:42,183,284...42,194,956
Ensembl chr 6:42,183,284...42,194,956 		JBrowse link
G LRIT1 leucine rich repeat, Ig-like and transmembrane domains 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:84,231,520...84,241,546
Ensembl chr10:84,231,520...84,241,546 		JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 involved_in TAS (PMID:10220376) PINC PMID:10220376 NCBI chr15:71,810,554...71,818,253
Ensembl chr15:71,792,638...71,818,259 		JBrowse link
G OPN1LW opsin 1, long wave sensitive involved_in IEA
IBA 		UniProt
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032 		JBrowse link
G OPN1MW opsin 1, medium wave sensitive involved_in IEA
IBA 		UniProt
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861 		JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 involved_in IEA
IBA 		UniProt
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:154,219,756...154,233,286
Ensembl chr  X:154,219,756...154,233,286 		JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 involved_in IEA
IBA 		InterPro
GO_Central
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr  X:154,257,582...154,271,090
Ensembl chr  X:154,257,582...154,271,090 		JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IEA
IBA
TAS 		(PMID:9089077) InterPro
GO_Central
PINC
UniProt		 PMID:9089077 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,485...128,775,794 		JBrowse link
G OPN3 opsin 3 involved_in NAS
IBA
IEA 		(PMID:10234000) UniProt
GO_Central		 PMID:10234000 GO_REF:0000033 GO_REF:0000043 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376 		JBrowse link
G OPN4 opsin 4 involved_in ISO
IEA
IBA
IDA 		(PMID:15674244) RGD
Ensembl
GO_Central
UniProt		 PMID:11834834 PMID:15674244 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 RGD:633348 NCBI chr10:86,654,547...86,666,460
Ensembl chr10:86,654,518...86,666,460 		JBrowse link
G OPN5 opsin 5 involved_in IEA
IBA
ISS 		Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 6:47,782,032...47,826,381
Ensembl chr 6:47,781,982...47,832,780 		JBrowse link
G PDC phosducin involved_in TAS (PMID:8288249) PINC PMID:8288249 NCBI chr 1:186,443,566...186,461,114
Ensembl chr 1:186,443,566...186,461,114 		JBrowse link
G PITPNM1 phosphatidylinositol transfer protein membrane associated 1 involved_in TAS (PMID:9680295) PINC PMID:9680295 NCBI chr11:67,491,768...67,506,266
Ensembl chr11:67,491,760...67,506,263 		JBrowse link
G PLEKHB1 pleckstrin homology domain containing B1 involved_in NAS (PMID:10585447) UniProt PMID:10585447 NCBI chr11:73,646,581...73,662,819
Ensembl chr11:73,646,178...73,662,819 		JBrowse link
G RCVRN recoverin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:9,896,320...9,905,271
Ensembl chr17:9,896,320...9,905,271 		JBrowse link
G RGR retinal G protein coupled receptor involved_in IEA
IBA 		UniProt
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 NCBI chr10:84,245,053...84,259,960
Ensembl chr10:84,230,666...84,259,960 		JBrowse link
G RHO rhodopsin involved_in
acts_upstream_of_or_within 		IEA
IBA 		UniProt
Ensembl
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog involved_in IEA
IBA 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000043 NCBI chr 4:109,827,972...109,844,942
Ensembl chr 4:109,827,972...109,849,123 		JBrowse link
G SLC24A2 solute carrier family 24 member 2 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr 9:19,507,455...20,307,892
Ensembl chr 9:19,507,452...19,789,037 		JBrowse link
G SLC24A4 solute carrier family 24 member 4 acts_upstream_of ISS
IEA 		ARUK-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:92,322,581...92,501,481
Ensembl chr14:92,322,581...92,501,481 		JBrowse link
G TRPC3 transient receptor potential cation channel subfamily C member 3 involved_in TAS (PMID:9215637) PINC PMID:9215637 NCBI chr 4:121,874,481...121,952,060
Ensembl chr 4:121,874,481...121,952,060 		JBrowse link
G UNC119 unc-119 lipid binding chaperone involved_in TAS (PMID:9538874) PINC PMID:9538874 NCBI chr17:28,546,707...28,552,628
Ensembl chr17:28,546,708...28,552,631 		JBrowse link
G protein-coupled opsin signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 involved_in ISO
IEA 		RGD
Ensembl		 PMID:11931744 GO_REF:0000107 RGD:1599009 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in TAS (PMID:1656454), (PMID:9147475), (PMID:9478965) UniProt PMID:1656454 PMID:9147475 PMID:9478965 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736 		JBrowse link
G PCP2 Purkinje cell protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr19:7,631,615...7,637,006
Ensembl chr19:7,631,611...7,633,719 		JBrowse link
G RHO rhodopsin involved_in ISO
ISS
TAS 		(PMID:8107847) RGD
UniProt
PINC		 PMID:8107847 PMID:8814134 GO_REF:0000024 RGD:6893595 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G SAG S-antigen visual arrestin involved_in TAS (PMID:2550422), (PMID:7670478) PINC PMID:2550422 PMID:7670478 NCBI chr 2:233,307,816...233,347,055
Ensembl chr 2:233,307,816...233,347,055 		JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OPN5 opsin 5 involved_in IEA
IMP 		(PMID:22043319) Ensembl
UniProt		 PMID:22043319 GO_REF:0000107 NCBI chr 6:47,782,032...47,826,381
Ensembl chr 6:47,781,982...47,832,780 		JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 involved_in TAS (PMID:9202155) PINC PMID:9202155 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148 		JBrowse link
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:6,423,738...6,435,121
Ensembl chr17:6,393,693...6,435,199 		JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 involved_in ISO (PMID:12196552) AgBase PMID:12196552 NCBI chr11:62,908,679...62,921,878
Ensembl chr11:62,908,679...62,921,807 		JBrowse link
G GNA11 G protein subunit alpha 11 involved_in ISS AgBase GO_REF:0000024 NCBI chr19:3,094,362...3,123,999
Ensembl chr19:3,094,362...3,123,999 		JBrowse link
G GNAQ G protein subunit alpha q involved_in ISS AgBase GO_REF:0000024 NCBI chr 9:77,716,097...78,031,811
Ensembl chr 9:77,716,097...78,031,811 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in IMP
IBA 		(PMID:17584859) UniProt
GO_Central		 PMID:17584859 GO_REF:0000033 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT3 G protein subunit alpha transducin 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:80,458,635...80,512,064
Ensembl chr 7:80,458,635...80,512,064 		JBrowse link
G PDE6B phosphodiesterase 6B involved_in TAS (PMID:8394174) PINC PMID:8394174 NCBI chr 4:625,573...670,782
Ensembl chr 4:625,573...670,782 		JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr10:93,612,537...93,666,010
Ensembl chr10:93,612,537...93,666,010 		JBrowse link
G PNPLA2 patatin like phospholipase domain containing 2 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr11:818,914...825,573
Ensembl chr11:818,914...825,573 		JBrowse link
G RBP4 retinol binding protein 4 acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr10:93,591,694...93,601,744
Ensembl chr10:93,591,687...93,601,744 		JBrowse link
G RHO rhodopsin involved_in TAS (PMID:1418997) PINC PMID:1418997 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in TAS (PMID:10391211) PINC PMID:10391211 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G TTR transthyretin acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chr18:31,591,877...31,598,821
Ensembl chr18:31,557,009...31,598,833 		JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:6,423,738...6,435,121
Ensembl chr17:6,393,693...6,435,199 		JBrowse link
G CAMKMT calmodulin-lysine N-methyltransferase involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 2:44,361,947...44,772,592
Ensembl chr 2:44,361,947...44,772,592 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in IDA
IEA
TAS 		(PMID:15946941) UniProt
InterPro
Reactome		 PMID:15946941 GO_REF:0000002 Reactome:R-HSA-2514859 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736 		JBrowse link
G GRK4 G protein-coupled receptor kinase 4 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 4:2,963,571...3,040,760
Ensembl chr 4:2,963,571...3,040,760 		JBrowse link
G GRK7 G protein-coupled receptor kinase 7 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr 3:141,749,984...141,819,352
Ensembl chr 3:141,763,408...141,819,352 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342 		JBrowse link
G GUCY2F guanylate cyclase 2F, retinal involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr  X:109,372,906...109,482,086
Ensembl chr  X:109,372,906...109,482,086 		JBrowse link
G NMT1 N-myristoyltransferase 1 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr17:45,061,317...45,109,016
Ensembl chr17:44,957,992...45,109,016 		JBrowse link
G NMT2 N-myristoyltransferase 2 involved_in TAS Reactome Reactome:R-HSA-2514859 NCBI chr10:15,105,700...15,168,693
Ensembl chr10:15,102,584...15,168,693 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27207
    cellular process 19782
      signal transduction 6672
        phototransduction 57
          G protein-coupled opsin signaling pathway + 13
          UV-A, blue light phototransduction 0
          phototransduction, UV 1
          phototransduction, visible light + 24
          red, far-red light phototransduction 1
Path 2
Term Annotations click to browse term
  biological_process 27207
    response to stimulus 16605
      response to abiotic stimulus 1928
        response to radiation 776
          response to light stimulus 411
            detection of light stimulus 80
              phototransduction 57
                G protein-coupled opsin signaling pathway + 13
                UV-A, blue light phototransduction 0
                phototransduction, UV 1
                phototransduction, visible light + 24
                red, far-red light phototransduction 1
paths to the root