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ONTOLOGY REPORT - ANNOTATIONS

Term:phototransduction
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Accession:GO:0007602 term browser browse the term
Definition:The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
Synonyms:narrow_synonym: phototransduction, visible light, light adaptation;   phototrophin mediated phototransduction
 related_synonym: opsin
 xref: Wikipedia:Visual_phototransduction


show annotations for term's descendants           Sort by:
phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARRB1 arrestin beta 1 acts_upstream_of_or_within ISO (PMID:11853756) MGI PMID:11853756 NCBI chr21:23,261,020...23,304,448
Ensembl chr21:23,235,711...23,297,786 		JBrowse link
G ASIC2 acid sensing ion channel subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14762118) Ensembl
MGI		 PMID:14762118 GO_REF:0000107 NCBI chr 9:39,082,465...40,084,612
Ensembl chr 9:39,082,806...40,083,842 		JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16249514) Ensembl
MGI		 PMID:16249514 GO_REF:0000107 NCBI chr18:50,014,698...50,017,854
Ensembl chr18:50,014,698...50,017,854 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634774) Ensembl
MGI		 PMID:15634774 GO_REF:0000107 NCBI chr 2:58,574,552...58,641,631
Ensembl chr 2:58,574,552...58,640,812 		JBrowse link
G GAR1 GAR1 ribonucleoprotein involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chr32:29,995,710...30,004,545
Ensembl chr32:29,996,148...30,004,536 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:11095744), (PMID:11853756), (PMID:15073279), (PMID:16249514), (PMID:17881533), (PMID:18367617) MGI PMID:11095744 PMID:11853756 PMID:15073279 PMID:16249514 PMID:17881533 More... NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29518352)
(PMID:17408617), (PMID:18171936)		 Ensembl
MGI		 PMID:17408617 PMID:18171936 PMID:29518352 GO_REF:0000107 NCBI chr 6:42,259,404...42,271,197
Ensembl chr 6:42,259,702...42,268,082 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18367617) Ensembl
MGI		 PMID:18367617 GO_REF:0000107 NCBI chr14:19,081,676...19,420,261
Ensembl chr14:19,415,510...19,420,255 		JBrowse link
G GPR21 G protein-coupled receptor 21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:59,760,384...59,764,309 JBrowse link
G GPR52 G protein-coupled receptor 52 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:24,858,588...24,862,982
Ensembl chr 7:24,860,473...24,862,117 		JBrowse link
G GPR88 G protein-coupled receptor 88 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:49,473,399...49,478,504
Ensembl chr 6:49,475,536...49,476,669 		JBrowse link
G GUCA1A guanylate cyclase activator 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:10,786,284...10,795,974
Ensembl chr12:10,788,424...10,795,442 		JBrowse link
G GUCA1B guanylate cyclase activator 1B acts_upstream_of_or_within ISO (PMID:11493703), (PMID:15173221) MGI PMID:11493703 PMID:15173221 NCBI chr12:10,796,961...10,806,796
Ensembl chr12:10,797,921...10,834,237 		JBrowse link
G OPN1LW opsin 1, medium wave sensitive involved_in IEA
IBA		 InterPro
GO_Central
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000118 NCBI chr  X:121,974,552...121,987,418
Ensembl chr  X:121,974,552...121,987,418 		JBrowse link
G OPN1SW opsin 1, short wave sensitive involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chr14:7,865,370...7,869,516
Ensembl chr14:7,865,561...7,868,745 		JBrowse link
G OPN3 opsin 3 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876 		JBrowse link
G OPN4 opsin 4 involved_in ISO
IBA
IEA		 RGD
GO_Central
TreeGrafter
UniProt
Ensembl		 PMID:11834834 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 RGD:633348 NCBI chr 4:34,350,058...34,365,410
Ensembl chr 4:34,355,128...34,365,215 		JBrowse link
G OPN5 opsin 5 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr12:15,831,311...15,858,121
Ensembl chr12:15,831,311...15,877,721 		JBrowse link
G RCVRN recoverin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15173221) Ensembl
MGI		 PMID:15173221 GO_REF:0000107 NCBI chr 5:34,323,580...34,330,667
Ensembl chr 5:34,323,576...34,330,667 		JBrowse link
G RGR retinal G protein coupled receptor involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chr 4:32,489,964...32,499,393
Ensembl chr 4:32,490,220...32,499,098 		JBrowse link
G RHO rhodopsin involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:16723493) UniProt
MGI
TreeGrafter
GO_Central
Ensembl
InterPro		 PMID:16723493 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr20:5,630,735...5,638,906 JBrowse link
G RRH retinal pigment epithelium-derived rhodopsin homolog involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chr32:30,005,920...30,027,012
Ensembl chr32:30,008,312...30,024,851 		JBrowse link
G SLC24A4 solute carrier family 24 member 4 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:6116933|PMID:28650316) ARUK-UCL
Ensembl		 PMID:28650316 GO_REF:0000107 MGI:6116933 NCBI chr 8:1,570,833...1,685,135
Ensembl chr 8:1,517,560...1,680,208 		JBrowse link
phototransduction, UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OPN5 opsin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:15,831,311...15,858,121
Ensembl chr12:15,831,311...15,877,721 		JBrowse link
phototransduction, visible light term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15365173) Ensembl
MGI		 PMID:15365173 GO_REF:0000107 NCBI chr 5:30,824,571...30,835,025
Ensembl chr 5:30,824,683...30,834,128 		JBrowse link
G CHRM1 cholinergic receptor muscarinic 1 involved_in ISO (PMID:12196552) AgBase PMID:12196552 NCBI chr18:53,783,938...53,797,750
Ensembl chr18:53,795,326...53,796,708 		JBrowse link
G GNAQ G protein subunit alpha q involved_in ISS AgBase GO_REF:0000024 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G PDE6C phosphodiesterase 6C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16723493) Ensembl
MGI		 PMID:16723493 GO_REF:0000107 NCBI chr28:7,839,604...7,887,827
Ensembl chr28:7,839,847...7,887,776 		JBrowse link
red, far-red light phototransduction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin ISO RGD PMID:2525480 RGD:6893558 NCBI chr20:5,630,735...5,638,906 JBrowse link
regulation of opsin-mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIPL1 aryl hydrocarbon receptor interacting protein like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15365173)
(PMID:15365178)		 Ensembl
MGI		 PMID:15365173 PMID:15365178 GO_REF:0000107 NCBI chr 5:30,824,571...30,835,025
Ensembl chr 5:30,824,683...30,834,128 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr22:60,911,953...60,929,330
Ensembl chr22:60,911,953...60,926,146 		JBrowse link
rhodopsin mediated signaling pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GNAT1 G protein subunit alpha transducin 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G PCP2 Purkinje cell protein 2 acts_upstream_of_or_within ISO (PMID:18768681) MGI PMID:18768681 NCBI chr20:52,407,707...52,413,061
Ensembl chr20:52,407,776...52,409,628 		JBrowse link
G RHO rhodopsin involved_in ISO
ISS		 RGD
UniProt		 PMID:8814134 GO_REF:0000024 RGD:6893595 NCBI chr20:5,630,735...5,638,906 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    cellular process 16920
      signal transduction 6300
        phototransduction 29
          G protein-mediated opsin signaling pathway + 0
          UV-A, blue light phototransduction 0
          phototransduction, UV 1
          phototransduction, visible light + 8
          red, far-red light phototransduction 1
          rhodopsin mediated signaling pathway + 5
Path 2
Term Annotations click to browse term
  biological_process 17878
    response to stimulus 9437
      response to abiotic stimulus 1571
        response to radiation 523
          response to light stimulus 371
            detection of light stimulus 54
              phototransduction 29
                G protein-mediated opsin signaling pathway + 0
                UV-A, blue light phototransduction 0
                phototransduction, UV 1
                phototransduction, visible light + 8
                red, far-red light phototransduction 1
                rhodopsin mediated signaling pathway + 5
paths to the root