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ONTOLOGY REPORT - ANNOTATIONS

Term:mesoderm development
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Accession:GO:0007498 term browser browse the term
Definition:The process whose specific outcome is the progression of the mesoderm over time, from its formation to the mature structure. The mesoderm is the middle germ layer that develops into muscle, bone, cartilage, blood and connective tissue.

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mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3695845|PMID:17117439) Ensembl
MGI		 PMID:17117439 GO_REF:0000107 MGI:3695845 NCBI chrNW_004936469:20,743,195...20,811,567
Ensembl chrNW_004936469:20,743,213...20,811,569 		JBrowse link
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1344152|PMID:10452853) MGI
Ensembl		 PMID:10452853 GO_REF:0000107 MGI:1344152 NCBI chrNW_004936469:29,195,329...29,273,237
Ensembl chrNW_004936469:29,194,908...29,273,196 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1344152|PMID:10452853) MGI
Ensembl		 PMID:10452853 GO_REF:0000107 MGI:1344152 NCBI chrNW_004936473:27,816,366...27,822,555
Ensembl chrNW_004936473:27,815,399...27,822,476 		JBrowse link
G Ctdnep1 CTD nuclear envelope phosphatase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5505383|PMID:23469192) MGI
Ensembl		 PMID:23469192 GO_REF:0000107 MGI:5505383 NCBI chrNW_004936595:537,131...543,341
Ensembl chrNW_004936595:536,297...543,071 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3821807|PMID:18794329) MGI
Ensembl		 PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chrNW_004936469:50,329,564...50,443,532
Ensembl chrNW_004936469:50,329,409...50,443,626 		JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5546318|PMID:23552073) MGI
Ensembl		 PMID:23552073 GO_REF:0000107 MGI:5546318 NCBI chrNW_004936500:4,244,706...4,257,223
Ensembl chrNW_004936500:4,244,604...4,257,265 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
involved_in
acts_upstream_of_or_within_positive_effect		 ISO
IEA		 (MGI:1888607|PMID:10926768) MGI
Ensembl		 PMID:10926768 GO_REF:0000107 MGI:1888607 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:1928688|PMID:11124112)
(MGI:2135612|PMID:11493558)		 MGI PMID:11124112 PMID:11493558 MGI:1928688 MGI:2135612 NCBI chrNW_004943883:4...1,756 JBrowse link
G Gdf1 growth differentiation factor 1 acts_upstream_of_or_within ISO (MGI:3763867|PMID:17936261) MGI PMID:17936261 MGI:3763867 NCBI chrNW_004936596:2,467,428...2,469,213
Ensembl chrNW_004936596:2,467,431...2,471,476 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3611720|PMID:16368929)
(MGI:3763867|PMID:17936261)		 MGI
Ensembl		 PMID:16368929 PMID:17936261 GO_REF:0000107 MGI:3611720 MGI:3763867 NCBI chrNW_004937847:8,179...16,783
Ensembl chrNW_004937847:7,456...16,783 		JBrowse link
G Irx3 iroquois homeobox 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1928688|PMID:11124112) MGI
Ensembl		 PMID:11124112 GO_REF:0000107 MGI:1928688 NCBI chrNW_004936475:6,810,678...6,813,186
Ensembl chrNW_004936475:6,810,666...6,813,192 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1889796|PMID:9247336) MGI
Ensembl		 PMID:9247336 GO_REF:0000107 MGI:1889796 NCBI chrNW_004936487:12,395,817...12,413,860
Ensembl chrNW_004936487:12,395,812...12,414,003 		JBrowse link
G Ovol1 ovo like transcriptional repressor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1312960|PMID:9808631) MGI
Ensembl		 PMID:9808631 GO_REF:0000107 MGI:1312960 NCBI chrNW_004936599:3,732,335...3,742,749
Ensembl chrNW_004936599:3,731,083...3,742,770 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (MGI:4459579|PMID:20484223) MGI PMID:20484223 MGI:4459579 NCBI chrNW_004936501:8,246,927...8,273,258 JBrowse link
G Pou4f1 POU class 4 homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367920|PMID:19877281) MGI
Ensembl		 PMID:19877281 GO_REF:0000107 MGI:4367920 NCBI chrNW_004936511:2,857,017...2,859,705
Ensembl chrNW_004936511:2,857,331...2,859,277 		JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1306879|PMID:9770493) MGI
Ensembl		 PMID:9770493 GO_REF:0000107 MGI:1306879 NCBI chrNW_004936647:1,031,118...1,055,961
Ensembl chrNW_004936647:1,031,119...1,055,149 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1195384|PMID:9420335) MGI
Ensembl		 PMID:9420335 GO_REF:0000107 MGI:1195384 NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123 		JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3654743|PMID:16801545) MGI
Ensembl		 PMID:16801545 GO_REF:0000107 MGI:3654743 NCBI chrNW_004936514:4,456,498...4,462,436
Ensembl chrNW_004936514:4,456,484...4,462,987 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:2138050|PMID:11242110) MGI PMID:11242110 MGI:2138050 NCBI chrNW_004936619:3,662,567...3,670,470
Ensembl chrNW_004936619:3,664,468...3,670,525 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:64493|PMID:8293872) MGI
Ensembl		 PMID:8293872 GO_REF:0000107 MGI:64493 NCBI chrNW_004936489:16,027,359...16,035,041
Ensembl chrNW_004936489:16,027,359...16,035,041 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (MGI:2681060|PMID:12890722) MGI PMID:12890722 MGI:2681060 NCBI chrNW_004936476:16,245,134...16,261,180
Ensembl chrNW_004936476:16,247,100...16,260,673 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:64780|PMID:8299937) MGI
Ensembl		 PMID:8299937 GO_REF:0000107 MGI:64780 NCBI chrNW_004936864:150,742...179,205
Ensembl chrNW_004936864:150,732...192,423 		JBrowse link
G Zic3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:9,780,895...9,792,865
Ensembl chrNW_004936513:9,786,709...9,793,077 		JBrowse link
axial mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:894149|PMID:9230313) MGI
Ensembl		 PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chrNW_004936469:50,329,564...50,443,532
Ensembl chrNW_004936469:50,329,409...50,443,626 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1934970|PMID:11358869) MGI
Ensembl		 PMID:11358869 GO_REF:0000107 MGI:1934970 NCBI chrNW_004936470:7,789,486...7,791,067
Ensembl chrNW_004936470:7,789,541...7,791,039 		JBrowse link
G Nog noggin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3640733|PMID:16712836) MGI
Ensembl		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chrNW_004936536:6,408,066...6,427,864
Ensembl chrNW_004936536:6,408,060...6,429,589 		JBrowse link
G Rpl38 ribosomal protein L38 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5014009|PMID:21529712) Ensembl
MGI		 PMID:21529712 GO_REF:0000107 MGI:5014009 NCBI chrNW_004936655:242,259...246,416
Ensembl chrNW_004936655:242,123...246,415 		JBrowse link
G Zic2 Zic family member 2 involved_in ISO (MGI:3714675|PMID:17490632) MGI PMID:17490632 MGI:3714675 NCBI chrNW_004936472:10,599,717...10,605,187
Ensembl chrNW_004936472:10,602,102...10,605,191 		JBrowse link
G Zic3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:9,780,895...9,792,865
Ensembl chrNW_004936513:9,786,709...9,793,077 		JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:894149|PMID:9230313) MGI
Ensembl		 PMID:9230313 GO_REF:0000107 MGI:894149 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G Epha2 EPH receptor A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1934524|PMID:11287184) MGI
Ensembl		 PMID:11287184 GO_REF:0000107 MGI:1934524 NCBI chrNW_004936474:3,648,395...3,673,856
Ensembl chrNW_004936474:3,648,550...3,673,861 		JBrowse link
axial mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3714667|PMID:17507402) MGI
Ensembl		 PMID:17507402 GO_REF:0000107 MGI:3714667 NCBI chrNW_004936469:50,329,564...50,443,532
Ensembl chrNW_004936469:50,329,409...50,443,626 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (MGI:3043490|PMID:14668413) MGI PMID:14668413 MGI:3043490 NCBI chrNW_004936712:1,848,478...1,962,644
Ensembl chrNW_004936712:1,848,464...1,962,650 		JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2677178|PMID:14511481) MGI
Ensembl		 PMID:14511481 GO_REF:0000107 MGI:2677178 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1341493|PMID:10421635) MGI
Ensembl		 PMID:10421635 GO_REF:0000107 MGI:1341493 NCBI chrNW_004936600:4,004,847...4,010,626
Ensembl chrNW_004936600:4,004,824...4,010,689 		JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:6,353,901...6,356,749
Ensembl chrNW_004936560:6,354,338...6,356,735 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936659:2,022,657...2,025,353
Ensembl chrNW_004936659:2,022,657...2,025,353 		JBrowse link
G Nodal nodal growth differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Smad2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:14,723,199...14,812,160
Ensembl chrNW_004936497:14,723,199...14,801,697 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281 		JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
ectoderm and mesoderm interaction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tp63 tumor protein p63 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1335635|PMID:10227294)
(MGI:1335634|PMID:10227293)		 MGI
Ensembl		 PMID:10227293 PMID:10227294 GO_REF:0000107 MGI:1335634 MGI:1335635 NCBI chrNW_004936578:492,267...705,282
Ensembl chrNW_004936578:491,507...705,729 		JBrowse link
gonadal mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amh anti-Mullerian hormone involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936588:1,342,791...1,345,746
Ensembl chrNW_004936588:1,343,085...1,345,654 		JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3838687|PMID:19182774)
(MGI:3580923|PMID:15677567), (MGI:3807430|PMID:18550854)		 MGI
Ensembl		 PMID:15677567 PMID:18550854 PMID:19182774 GO_REF:0000107 MGI:3580923 MGI:3807430 MGI:3838687 NCBI chrNW_004936474:28,049,326...28,061,495
Ensembl chrNW_004936474:28,047,808...28,056,065 		JBrowse link
intermediate mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3613210|PMID:16223478) MGI
Ensembl		 PMID:16223478 GO_REF:0000107 MGI:3613210 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
lateral mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3702797|PMID:16943278) MGI
Ensembl		 PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,533,264...15,534,576
Ensembl chrNW_004936483:15,533,522...15,534,576 		JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (MGI:3773640|PMID:18332127) MGI PMID:18332127 MGI:3773640 NCBI chrNW_004936528:5,607,993...5,774,161
Ensembl chrNW_004936528:5,607,987...5,856,678 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3773640|PMID:18332127) MGI
Ensembl		 PMID:18332127 GO_REF:0000107 MGI:3773640 NCBI chrNW_004936664:3,242,815...3,257,649
Ensembl chrNW_004936664:3,242,974...3,255,856 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3773640|PMID:18332127) MGI
Ensembl		 PMID:18332127 GO_REF:0000107 MGI:3773640 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567 		JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:1928688|PMID:11124112) MGI PMID:11124112 MGI:1928688 NCBI chrNW_004943883:4...1,756 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:667,960...669,367
Ensembl chrNW_004936842:667,936...669,441 		JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3051920|PMID:15136140) MGI
Ensembl		 PMID:15136140 GO_REF:0000107 MGI:3051920 NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
G Eomes eomesodermin acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5697986|PMID:26494787) MGI
Ensembl		 PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chrNW_004936473:18,825,969...18,833,179
Ensembl chrNW_004936473:18,825,942...18,833,179 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936620:2,966,341...2,969,349
Ensembl chrNW_004936620:2,966,341...2,969,349 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5697986|PMID:26494787) MGI
Ensembl		 PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2155575|PMID:11311163)
(MGI:2677178|PMID:14511481)		 MGI
Ensembl		 PMID:11311163 PMID:14511481 GO_REF:0000107 MGI:2155575 MGI:2677178 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936495:1,433,124...1,449,409
Ensembl chrNW_004936495:1,432,598...1,442,918 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5697986|PMID:26494787) MGI
Ensembl		 PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chrNW_004936497:12,242,869...12,278,012
Ensembl chrNW_004936497:12,249,140...12,278,123 		JBrowse link
G Smim43 small integral membrane protein 43 involved_in ISO (MGI:7313523|PMID:35810171) UniProt PMID:35810171 MGI:7313523
G Ssbp3 single stranded DNA binding protein 3 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:5697986|PMID:26494787) MGI
Ensembl		 PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chrNW_004936522:6,802,057...6,957,640
Ensembl chrNW_004936522:6,802,052...6,956,129 		JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,045,679...12,050,737
Ensembl chrNW_004936495:12,045,377...12,051,536 		JBrowse link
mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1345529|PMID:10479450)
(MGI:3695845|PMID:17117439)		 MGI
Ensembl		 PMID:10479450 PMID:17117439 GO_REF:0000107 MGI:1345529 MGI:3695845 NCBI chrNW_004936469:20,743,195...20,811,567
Ensembl chrNW_004936469:20,743,213...20,811,569 		JBrowse link
G Ahdc1 AT-hook DNA binding motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:11,824,692...11,846,355
Ensembl chrNW_004936474:11,824,697...11,876,817 		JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5913685|PMID:28911199) MGI
Ensembl		 PMID:28911199 GO_REF:0000107 MGI:5913685 NCBI chrNW_004936543:8,354,795...8,366,123
Ensembl chrNW_004936543:8,354,760...8,361,269 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4415813|PMID:18462699), (MGI:70235|PMID:7799920) MGI
Ensembl		 PMID:7799920 PMID:18462699 GO_REF:0000107 MGI:4415813 MGI:70235 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3578079|PMID:15843411) MGI
Ensembl		 PMID:15843411 GO_REF:0000107 MGI:3578079 NCBI chrNW_004936530:71,965...143,940
Ensembl chrNW_004936530:71,920...143,940 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3722226|PMID:17699604) MGI
Ensembl		 PMID:17699604 GO_REF:0000107 MGI:3722226 NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1855789|PMID:10772805) MGI
Ensembl		 PMID:10772805 GO_REF:0000107 MGI:1855789 NCBI chrNW_004936726:1,543,263...1,711,422
Ensembl chrNW_004936726:1,543,245...1,704,541 		JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO (MGI:2662951|PMID:12810603) MGI PMID:12810603 MGI:2662951 NCBI chrNW_004936578:5,498,473...5,507,195
Ensembl chrNW_004936578:5,498,887...5,507,198 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in IEA
ISS		 Ensembl
CAFA		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936487:11,793,078...11,813,803
Ensembl chrNW_004936487:11,793,005...11,812,934 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4415813|PMID:18462699) MGI
Ensembl		 PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chrNW_004936787:307,290...309,963
Ensembl chrNW_004936787:306,941...310,166 		JBrowse link
G Ecsit ECSIT signaling integrator acts_upstream_of_or_within ISO (MGI:2682456|PMID:14633973) MGI PMID:14633973 MGI:2682456 NCBI chrNW_004936659:1,550,192...1,563,534
Ensembl chrNW_004936659:1,549,581...1,563,574 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1354065|PMID:10716450) MGI
Ensembl		 PMID:10716450 GO_REF:0000107 MGI:1354065 NCBI chrNW_004936473:18,825,969...18,833,179
Ensembl chrNW_004936473:18,825,942...18,833,179 		JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chrNW_004936570:671,152...673,768 JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3608483|PMID:16236767) MGI
Ensembl		 PMID:16236767 GO_REF:0000107 MGI:3608483 NCBI chrNW_004936562:4,345,146...4,489,180
Ensembl chrNW_004936562:4,342,874...4,489,180 		JBrowse link
G Gpi glucose-6-phosphate isomerase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:84014|PMID:8922529) MGI
Ensembl		 PMID:8922529 GO_REF:0000107 MGI:84014 NCBI chrNW_004936570:1,582,120...1,608,537
Ensembl chrNW_004936570:1,579,372...1,608,788 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1197801|PMID:9500550) MGI
Ensembl		 PMID:9500550 GO_REF:0000107 MGI:1197801 NCBI chrNW_004936515:8,289,764...8,292,937
Ensembl chrNW_004936515:8,289,315...8,293,175 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO (MGI:70235|PMID:7799920) MGI PMID:7799920 MGI:70235 NCBI chrNW_004936478:16,878,725...16,884,065 JBrowse link
G Macf1 microtubule actin crosslinking factor 1 acts_upstream_of_or_within ISO (MGI:3640889|PMID:16815997) MGI PMID:16815997 MGI:3640889 NCBI chrNW_004936474:21,053,755...21,401,336
Ensembl chrNW_004936474:21,178,791...21,400,147 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:707944|PMID:9171370) MGI
Ensembl		 PMID:9171370 GO_REF:0000107 MGI:707944 NCBI chrNW_004936657:3,536,212...3,622,999
Ensembl chrNW_004936657:3,536,141...3,623,821 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2155575|PMID:11311163) MGI
Ensembl		 PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705 		JBrowse link
G Nog noggin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4415813|PMID:18462699) MGI
Ensembl		 PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (MGI:3042044|PMID:13129926) MGI PMID:13129926 MGI:3042044 NCBI chrNW_004936524:8,252,321...8,290,747
Ensembl chrNW_004936524:8,252,381...8,289,157 		JBrowse link
G Pofut2 protein O-fucosyltransferase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4838381|PMID:20637190) MGI
Ensembl		 PMID:20637190 GO_REF:0000107 MGI:4838381 NCBI chrNW_004936778:1,024,066...1,036,365
Ensembl chrNW_004936778:1,023,992...1,039,135 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2183097|PMID:12004056) MGI
Ensembl		 PMID:12004056 GO_REF:0000107 MGI:2183097 NCBI chrNW_004936659:2,750,015...2,765,914
Ensembl chrNW_004936659:2,750,537...2,765,753 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:1,353,905...1,464,636
Ensembl chrNW_004936608:1,353,897...1,464,636 		JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha acts_upstream_of_or_within ISO (MGI:2183097|PMID:12004056) MGI PMID:12004056 MGI:2183097 NCBI chrNW_004936541:7,845,876...7,863,677
Ensembl chrNW_004936541:7,845,676...7,863,709 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) UniProt PMID:10477299 MGI:1343990 NCBI chrNW_004936470:7,966,096...7,972,379 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3039049|PMID:15084457) MGI
Ensembl		 PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chrNW_004936497:14,723,199...14,812,160
Ensembl chrNW_004936497:14,723,199...14,801,697 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3039049|PMID:15084457) MGI
Ensembl		 PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:4,456,498...4,462,436
Ensembl chrNW_004936514:4,456,484...4,462,987 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1312998|PMID:9799237), (MGI:1927031|PMID:11060034) MGI
Ensembl		 PMID:9799237 PMID:11060034 GO_REF:0000107 MGI:1312998 MGI:1927031 NCBI chrNW_004936476:16,779,941...16,789,499
Ensembl chrNW_004936476:16,782,233...16,789,130 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804)
(MGI:2447720|PMID:9490412)		 MGI
Ensembl		 PMID:9490412 PMID:15755804 GO_REF:0000107 MGI:2447720 MGI:3577662 NCBI chrNW_004936501:12,402,709...12,407,571
Ensembl chrNW_004936501:12,402,724...12,407,571 		JBrowse link
G Tlx2 T cell leukemia homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1267265|PMID:9550720) MGI
Ensembl		 PMID:9550720 GO_REF:0000107 MGI:1267265 NCBI chrNW_004936556:727,637...729,391
Ensembl chrNW_004936556:727,637...729,361 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3578079|PMID:15843411) MGI
Ensembl		 PMID:15843411 GO_REF:0000107 MGI:3578079 NCBI chrNW_004936626:1,901,686...1,946,554
Ensembl chrNW_004936626:1,901,680...1,946,460 		JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3721365|PMID:17697936) MGI
Ensembl		 PMID:17697936 GO_REF:0000107 MGI:3721365 NCBI chrNW_004936492:10,185,096...10,244,466
Ensembl chrNW_004936492:10,187,206...10,225,989 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936591:3,537,981...3,639,774
Ensembl chrNW_004936591:3,537,981...3,639,774 		JBrowse link
G Wnt3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,943,260...1,985,829
Ensembl chrNW_004936541:1,943,260...1,984,826 		JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3821807|PMID:18794329) MGI
Ensembl		 PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chrNW_004936469:50,329,564...50,443,532
Ensembl chrNW_004936469:50,329,409...50,443,626 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:71468|PMID:7720590) MGI
Ensembl		 PMID:7720590 GO_REF:0000107 MGI:71468 NCBI chrNW_004936489:16,027,359...16,035,041
Ensembl chrNW_004936489:16,027,359...16,035,041 		JBrowse link
mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4431136|PMID:20133625) MGI
Ensembl		 PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chrNW_004936596:795,940...898,823
Ensembl chrNW_004936596:796,601...883,373 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:7,230,361...7,243,651
Ensembl chrNW_004936558:7,230,668...7,244,361 		JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:70235|PMID:7799920) MGI
Ensembl		 PMID:7799920 GO_REF:0000107 MGI:70235 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO RGD PMID:7803853 RGD:632663 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:3766861|PMID:17881493) MGI PMID:17881493 MGI:3766861 NCBI chrNW_004943883:4...1,756 JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO (MGI:70235|PMID:7799920) MGI PMID:7799920 MGI:70235 NCBI chrNW_004936478:16,878,725...16,884,065 JBrowse link
G Itga2 integrin subunit alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:14,320,292...14,417,828
Ensembl chrNW_004936480:14,320,692...14,417,786 		JBrowse link
G Itga3 integrin subunit alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,553,904...11,583,387
Ensembl chrNW_004936490:11,553,861...11,583,380 		JBrowse link
G Itga8 integrin subunit alpha 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936574:5,985,181...6,155,067
Ensembl chrNW_004936574:5,984,939...6,155,164 		JBrowse link
G Itgb1 integrin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936574:1,465,981...1,495,717
Ensembl chrNW_004936574:1,465,897...1,495,762 		JBrowse link
G Itgb3 integrin subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:2,822,789...2,871,069
Ensembl chrNW_004936541:2,815,738...2,871,035 		JBrowse link
G Itgb4 integrin subunit beta 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:912,302...944,819
Ensembl chrNW_004936594:912,291...946,012 		JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5448135|PMID:22949634) MGI
Ensembl		 PMID:22949634 GO_REF:0000107 MGI:5448135 NCBI chrNW_004936502:10,980,303...11,196,711
Ensembl chrNW_004936502:10,980,118...11,196,163 		JBrowse link
G Kdm6b lysine demethylase 6B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,077,318...1,099,082
Ensembl chrNW_004936595:1,089,544...1,097,595 		JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3654744|PMID:16801560) MGI
Ensembl		 PMID:16801560 GO_REF:0000107 MGI:3654744 NCBI chrNW_004936892:181,834...187,691 JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Smad1 SMAD family member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3654744|PMID:16801560) MGI
Ensembl		 PMID:16801560 GO_REF:0000107 MGI:3654744 NCBI chrNW_004936535:3,582,512...3,626,312
Ensembl chrNW_004936535:3,582,489...3,657,063 		JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:76261|PMID:7657163) MGI
Ensembl		 PMID:7657163 GO_REF:0000107 MGI:76261 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936648:395,526...546,705
Ensembl chrNW_004936648:395,524...546,729 		JBrowse link
G Hoxa11 homeobox A11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:3,809,288...3,813,014
Ensembl chrNW_004936478:3,809,288...3,813,014 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:3768605|PMID:17785448) UniProt PMID:17785448 MGI:3768605 NCBI chrNW_004936600:4,850,594...4,939,010
Ensembl chrNW_004936600:4,850,552...4,928,214 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of
involved_in		 ISO
IEA		 (MGI:3711603|PMID:17462603) MGI
Ensembl		 PMID:17462603 GO_REF:0000107 MGI:3711603 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021 		JBrowse link
G Six2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:7,047,563...7,051,129
Ensembl chrNW_004936508:7,047,304...7,051,732 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2447720|PMID:9490412) MGI
Ensembl		 PMID:9490412 GO_REF:0000107 MGI:2447720 NCBI chrNW_004936501:12,402,709...12,407,571
Ensembl chrNW_004936501:12,402,724...12,407,571 		JBrowse link
negative regulation of mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO (PMID:9660951)
(MGI:1858315|PMID:10748465)		 BHF-UCL PMID:9660951 PMID:10748465 MGI:1858315 NCBI chrNW_004936539:8,321,432...8,323,909 JBrowse link
G Rps6ka6 ribosomal protein S6 kinase A6 involved_in ISO (MGI:3041939|PMID:15121846) UniProt PMID:15121846 MGI:3041939 NCBI chrNW_004936547:4,846,012...4,952,773
Ensembl chrNW_004936547:4,857,685...4,975,222 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (MGI:4946171|PMID:21062744) BHF-UCL PMID:21062744 MGI:4946171 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5433834|PMID:21127502) MGI
Ensembl		 PMID:21127502 GO_REF:0000107 MGI:5433834 NCBI chrNW_004936578:492,267...705,282
Ensembl chrNW_004936578:491,507...705,729 		JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936787:307,290...309,963
Ensembl chrNW_004936787:306,941...310,166 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,533,264...15,534,576
Ensembl chrNW_004936483:15,533,522...15,534,576 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3711603|PMID:17462603) MGI
Ensembl		 PMID:17462603 GO_REF:0000107 MGI:3711603 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021 		JBrowse link
paraxial mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3702797|PMID:16943278) MGI
Ensembl		 PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3620337|PMID:15170697) MGI
Ensembl		 PMID:15170697 GO_REF:0000107 MGI:3620337 NCBI chrNW_004936661:2,322,531...2,330,150
Ensembl chrNW_004936661:2,322,531...2,329,953 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chrNW_004936469:50,329,564...50,443,532
Ensembl chrNW_004936469:50,329,409...50,443,626 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3702797|PMID:16943278) MGI
Ensembl		 PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chrNW_004936710:1,760,365...1,815,269
Ensembl chrNW_004936710:1,760,089...1,815,508 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004936509:11,525,764...11,624,833
Ensembl chrNW_004936509:11,524,556...11,624,621 		JBrowse link
G Nup133 nucleoporin 133 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 MGI:3577662 NCBI chrNW_004936484:20,185,558...20,230,904
Ensembl chrNW_004936484:20,185,584...20,231,352 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804) MGI
Ensembl		 PMID:9636176 PMID:15755804 GO_REF:0000107 MGI:1267118 MGI:3577662 NCBI chrNW_004936536:6,408,066...6,427,864
Ensembl chrNW_004936536:6,408,060...6,429,589 		JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO (MGI:3773640|PMID:18332127) MGI PMID:18332127 MGI:3773640 NCBI chrNW_004936528:5,607,993...5,774,161
Ensembl chrNW_004936528:5,607,987...5,856,678 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3773640|PMID:18332127) MGI
Ensembl		 PMID:18332127 GO_REF:0000107 MGI:3773640 NCBI chrNW_004936664:3,242,815...3,257,649
Ensembl chrNW_004936664:3,242,974...3,255,856 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3773640|PMID:18332127) MGI
Ensembl		 PMID:18332127 GO_REF:0000107 MGI:3773640 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567 		JBrowse link
G Zic2 Zic family member 2 involved_in ISO (MGI:3714675|PMID:17490632) MGI PMID:17490632 MGI:3714675 NCBI chrNW_004936472:10,599,717...10,605,187
Ensembl chrNW_004936472:10,602,102...10,605,191 		JBrowse link
G Zic3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:9,780,895...9,792,865
Ensembl chrNW_004936513:9,786,709...9,793,077 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2150572|PMID:11562355) MGI
Ensembl		 PMID:11562355 GO_REF:0000107 MGI:2150572 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1334099|PMID:10090727) MGI
Ensembl		 PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1334099|PMID:10090727) MGI
Ensembl		 PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chrNW_004936818:453,635...569,194
Ensembl chrNW_004936818:453,635...567,469 		JBrowse link
G LOC101966195 huntingtin acts_upstream_of_or_within ISO (MGI:3609520|PMID:16109169) MGI PMID:16109169 MGI:3609520 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071 		JBrowse link
G LOC101974301 exocyst complex component 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:2,201,947...2,424,200
Ensembl chrNW_004936579:1,644,164...2,424,248 		JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5634837|PMID:25813538) MGI
Ensembl		 PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chrNW_004936498:4,909,041...4,927,482
Ensembl chrNW_004936498:4,908,978...4,927,165 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5634837|PMID:25813538) MGI
Ensembl		 PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
paraxial mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004936509:11,525,764...11,624,833
Ensembl chrNW_004936509:11,524,556...11,624,621 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3039049|PMID:15084457) MGI
Ensembl		 PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chrNW_004936497:14,723,199...14,812,160
Ensembl chrNW_004936497:14,723,199...14,801,697 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3039049|PMID:15084457) MGI
Ensembl		 PMID:15084457 GO_REF:0000107 MGI:3039049 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3702797|PMID:16943278) MGI
Ensembl		 PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:86990|PMID:9106663) MGI
Ensembl		 PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:86727|PMID:9126297) MGI
Ensembl		 PMID:9126297 GO_REF:0000107 MGI:86727 NCBI chrNW_004936864:150,742...179,205
Ensembl chrNW_004936864:150,732...192,423 		JBrowse link
positive regulation of mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chrNW_004936570:671,152...673,768 JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3773385|PMID:16403910) MGI
Ensembl		 PMID:16403910 GO_REF:0000107 MGI:3773385 NCBI chrNW_004936526:2,984,900...2,989,494
Ensembl chrNW_004936526:2,984,907...2,987,893 		JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:3,920,043...3,932,987
Ensembl chrNW_004936658:3,920,043...3,932,987 		JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936864:150,742...179,205
Ensembl chrNW_004936864:150,732...192,423 		JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3702797|PMID:16943278) MGI
Ensembl		 PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chrNW_004936804:52,435...115,289
Ensembl chrNW_004936804:48,947...115,412 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3702797|PMID:16943278) MGI
Ensembl		 PMID:16943278 GO_REF:0000107 MGI:3702797 NCBI chrNW_004936710:1,760,365...1,815,269
Ensembl chrNW_004936710:1,760,089...1,815,508 		JBrowse link
regulation of mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus7 pseudouridine synthase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:18,354,009...18,395,765
Ensembl chrNW_004936479:18,354,022...18,395,765 		JBrowse link
regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3766861|PMID:17881493) MGI
Ensembl		 PMID:17881493 GO_REF:0000107 MGI:3766861 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15080
    developmental process 6006
      anatomical structure development 5670
        tissue development 2015
          mesoderm development 122
            axial mesoderm development + 11
            digestive tract mesoderm development 1
            ectoderm and mesoderm interaction 1
            gonadal mesoderm development 1
            intermediate mesoderm development + 2
            lateral mesoderm development + 14
            mesectoderm development 0
            mesendoderm development + 11
            mesoderm morphogenesis + 77
            negative regulation of mesoderm development + 4
            paraxial mesoderm development + 22
            positive regulation of mesoderm development + 2
            regulation of mesoderm development + 7
paths to the root