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ONTOLOGY REPORT - ANNOTATIONS


Term:midgut development
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Accession:GO:0007494 term browser browse the term
Definition:The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine.


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midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 1:226,163,347...226,217,342
Ensembl chr 1:226,161,296...226,217,312
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 1:113,932,722...114,037,059
Ensembl chr 1:113,715,620...114,037,249
JBrowse link
G ARG2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chr 7:91,343,987...91,385,911
Ensembl chr 7:91,343,987...91,385,911
JBrowse link
G ASL argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 3:16,637,481...16,646,869
Ensembl chr 3:16,637,481...16,646,869
JBrowse link
G ASS1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 1:270,531,434...270,586,364
Ensembl chr 1:270,531,589...270,586,361
JBrowse link
G CASP1 caspase 1, apoptosis-related cysteine peptidase ISO RGD PMID:12396474 RGD:5130192 NCBI chr 9:35,188,066...35,199,364
Ensembl chr 9:35,186,420...35,200,328
JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr15:113,210,038...113,339,086
Ensembl chr15:113,209,999...113,339,078
JBrowse link
G CTNNB1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr13:25,163,550...25,208,314
Ensembl chr13:25,137,173...25,208,311
JBrowse link
G DAB1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chr 6:154,156,595...155,374,403
Ensembl chr 6:154,936,439...155,374,403
JBrowse link
G EGFR epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,478,882
JBrowse link
G FOXF1 forkhead box F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:2,579,348...2,598,122
Ensembl chr 6:2,592,993...2,597,659
JBrowse link
G LOC100624628 lithostathine-like ISO RGD PMID:7720628 RGD:9850133 NCBI chr 3:64,839,426...64,841,924 JBrowse link
G LOC110260333 hydroxymethylglutaryl-CoA synthase, mitochondrial-like ISO RGD PMID:8620869 RGD:2326125 NCBI chr 4:101,385,486...101,404,273
Ensembl chr 4:101,385,512...101,443,405
JBrowse link
G OTC ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chr  X:34,322,398...34,391,711
Ensembl chr  X:34,322,298...34,391,837
JBrowse link
G RELN reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr 9:103,460,855...103,963,728
Ensembl chr 9:103,460,857...103,963,965
JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 1:273,698,842...273,797,622
Ensembl chr 1:273,705,503...273,797,622
JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,734...19,479,374
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3833777|PMID:19100728) Ensembl
MGI
PMID:19100728 GO_REF:0000107 MGI:3833777 NCBI chr13:37,344,684...37,367,215
Ensembl chr13:37,344,699...37,367,207
JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:77408|PMID:8582288) Ensembl
MGI
PMID:8582288 GO_REF:0000107 MGI:77408 NCBI chr11:50,073,300...50,102,879
Ensembl chr11:50,072,554...50,102,884
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXL1 forkhead box L1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:893314|PMID:9203584) Ensembl
MGI
PMID:9203584 GO_REF:0000107 MGI:893314 NCBI chr 6:2,540,748...2,544,978
Ensembl chr 6:2,542,675...2,543,691
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16579
    multicellular organismal process 8041
      multicellular organism development 5301
        tube development 1192
          digestive tract development 162
            midgut development 20
              anterior midgut development 0
              posterior midgut development 1
              visceral mesoderm-endoderm interaction involved in midgut development 1
Path 2
Term Annotations click to browse term
  biological_process 16579
    developmental process 6310
      anatomical structure development 5829
        multicellular organism development 5301
          system development 4991
            digestive system development 176
              digestive tract development 162
                midgut development 20
                  anterior midgut development 0
                  posterior midgut development 1
                  visceral mesoderm-endoderm interaction involved in midgut development 1
paths to the root