Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:midgut development
go back to main search page
Accession:GO:0007494 term browser browse the term
Definition:The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine.


show annotations for term's descendants           Sort by:
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr19:20,469,947...20,620,827
Ensembl chr19:20,470,079...20,620,829 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Arg2 arginase type II ISO RGD PMID:10050048 RGD:4144052 NCBI chr12:79,177,562...79,203,075
Ensembl chr12:79,177,551...79,203,075 		JBrowse link
G Asl argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 5:130,040,099...130,053,222
Ensembl chr 5:130,040,099...130,058,088 		JBrowse link
G Ass1 argininosuccinate synthetase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 2:31,360,282...31,410,682
Ensembl chr 2:31,360,219...31,410,684 		JBrowse link
G Casp1 caspase 1 ISO RGD PMID:12396474 RGD:5130192 NCBI chr 9:5,298,517...5,307,281
Ensembl chr 9:5,298,508...5,307,290 		JBrowse link
G Cps1 carbamoyl-phosphate synthetase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 1:67,151,294...67,270,426
Ensembl chr 1:67,162,185...67,270,418 		JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dab1 disabled 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chr 4:103,476,425...104,602,041
Ensembl chr 4:103,476,556...104,602,041 		JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chr11:16,700,153...16,868,158
Ensembl chr11:16,702,203...16,868,158 		JBrowse link
G Foxf1 forkhead box F1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:121,811,100...121,814,883
Ensembl chr 8:121,811,125...121,814,883 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chr 3:98,187,747...98,218,054
Ensembl chr 3:98,187,751...98,218,054 		JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chr  X:10,118,584...10,187,275
Ensembl chr  X:10,118,544...10,187,263 		JBrowse link
G Reg1 regenerating islet-derived 1 ISO RGD PMID:7720628 RGD:9850133 NCBI chr 6:78,402,966...78,405,651
Ensembl chr 6:78,399,694...78,405,650 		JBrowse link
G Reg3b regenerating islet-derived 3 beta ISO RGD PMID:7720628 RGD:9850133 NCBI chr 6:78,347,868...78,350,449
Ensembl chr 6:78,347,640...78,350,449 		JBrowse link
G Reln reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr 5:22,089,452...22,549,703
Ensembl chr 5:22,089,452...22,549,700 		JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IMP (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (PMID:19100728) MGI PMID:19100728 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B acts_upstream_of_or_within IMP (PMID:8582288) MGI PMID:8582288 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxl1 forkhead box L1 acts_upstream_of_or_within IMP (PMID:9203584) MGI PMID:9203584 NCBI chr 8:121,854,572...121,857,383
Ensembl chr 8:121,854,679...121,857,383 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    multicellular organismal process 8908
      multicellular organism development 5433
        tube development 1392
          digestive tract development 171
            midgut development 21
              anterior midgut development 0
              posterior midgut development 1
              visceral mesoderm-endoderm interaction involved in midgut development 1
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure development 6841
        multicellular organism development 5433
          system development 4660
            digestive system development 185
              digestive tract development 171
                midgut development 21
                  anterior midgut development 0
                  posterior midgut development 1
                  visceral mesoderm-endoderm interaction involved in midgut development 1
paths to the root