Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:midgut development
go back to main search page
Accession:GO:0007494 term browser browse the term
Definition:The process whose specific outcome is the progression of the midgut over time, from its formation to the mature structure. The midgut is the middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine.


show annotations for term's descendants           Sort by:
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEP RGD PMID:15964596 RGD:1643113 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:227,427,070...227,579,500 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IEP RGD PMID:15964596 RGD:1643113 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:80,758,142...80,837,883 		JBrowse link
G Arg2 arginase 2 IEP RGD PMID:10050048 RGD:4144052 NCBI chr 6:103,669,001...103,694,375
Ensembl chr 6:103,668,988...103,694,375 		JBrowse link
G Asl argininosuccinate lyase IEP RGD PMID:9544996 RGD:4139911 NCBI chr12:32,295,779...32,313,257
Ensembl chr12:32,295,633...32,317,261 		JBrowse link
G Ass1 argininosuccinate synthase 1 IEP RGD PMID:9544996 RGD:4139911 NCBI chr 3:35,144,765...35,194,632
Ensembl chr 3:35,144,999...35,194,627 		JBrowse link
G Casp1 caspase 1 IEP RGD PMID:12396474 RGD:5130192 NCBI chr 8:10,746,338...10,882,295
Ensembl chr 8:10,746,333...10,882,275 		JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 IEP RGD PMID:9544996 RGD:4139911 NCBI chr 9:76,063,863...76,186,739
Ensembl chr 9:76,000,754...76,186,734 		JBrowse link
G Ctnnb1 catenin beta 1 IEP RGD PMID:17356920 RGD:2289844 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Dab1 DAB adaptor protein 1 IEP RGD PMID:19946030 RGD:2317766 NCBI chr 5:123,621,510...124,742,585
Ensembl chr 5:124,369,415...124,742,584 		JBrowse link
G Egfr epidermal growth factor receptor IEP RGD PMID:7926492 RGD:10395256 NCBI chr14:95,378,626...95,551,358
Ensembl chr14:95,378,626...95,551,358 		JBrowse link
G Foxf1 forkhead box F1 involved_in ISO
IEA 		(PMID:19500772)
GO_REF:0000107 		RGD
Ensembl		 PMID:19500772 GO_REF:0000107 NCBI chr19:66,062,635...66,066,427
Ensembl chr19:66,062,369...66,066,428 		JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 IEP RGD PMID:8620869 RGD:2326125 NCBI chr 2:188,564,348...188,590,872
Ensembl chr 2:188,547,767...188,592,242 		JBrowse link
G Otc ornithine transcarbamylase IEP RGD PMID:9544996 RGD:4139911 NCBI chr  X:15,126,358...15,202,473
Ensembl chr  X:15,126,358...15,239,555 		JBrowse link
G Reg1a regenerating family member 1 alpha IEP RGD PMID:7720628 RGD:9850133 NCBI chr 4:112,450,466...112,453,130
Ensembl chr 4:112,450,468...112,453,585 		JBrowse link
G Reg3b regenerating family member 3 beta IEP RGD PMID:7720628 RGD:9850133 NCBI chr 4:112,419,776...112,423,014
Ensembl chr 4:112,419,776...112,423,014 		JBrowse link
G Reln reelin IEP RGD PMID:19946030 RGD:2317766 NCBI chr 4:13,628,440...14,055,201
Ensembl chr 4:13,628,399...14,055,162 		JBrowse link
G Rxra retinoid X receptor alpha IEP RGD PMID:15964596 RGD:1643113 NCBI chr 3:31,387,892...31,474,415
Ensembl chr 3:31,388,223...31,474,417 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:11517919)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:59,311,041...59,341,281 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1857617 (PMID:19100728) 		Ensembl
RGD		 PMID:19100728 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,703,665...3,724,860 		JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856149 (PMID:8582288) 		Ensembl
RGD		 PMID:8582288 GO_REF:0000107 NCBI chr15:87,055,490...87,086,765
Ensembl chr15:87,057,691...87,086,765 		JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxl1 forkhead box L1 acts_upstream_of_or_within ISO MGI:2178230 (PMID:9203584) RGD PMID:9203584 NCBI chr19:66,105,953...66,109,366 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    multicellular organismal process 9018
      multicellular organism development 5415
        tube development 1370
          digestive tract development 180
            midgut development 21
              anterior midgut development 0
              posterior midgut development 1
              visceral mesoderm-endoderm interaction involved in midgut development 1
Path 2
Term Annotations click to browse term
  biological_process 19315
    developmental process 7255
      anatomical structure development 6748
        multicellular organism development 5415
          system development 4702
            digestive system development 196
              digestive tract development 180
                midgut development 21
                  anterior midgut development 0
                  posterior midgut development 1
                  visceral mesoderm-endoderm interaction involved in midgut development 1
paths to the root