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ONTOLOGY REPORT - ANNOTATIONS


Term:endoderm development
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Accession:GO:0007492 term browser browse the term
Definition:The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.


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endoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity regulated cytoskeleton associated protein acts_upstream_of_or_within ISO (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chrNW_004936470:9,185,145...9,188,260 JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chrNW_004936697:1,054,237...1,061,468 JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chrNW_004936804:52,435...115,289 JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO (MGI:3840601|PMID:18974875) MGI PMID:18974875 MGI:3840601 NCBI chrNW_004936541:5,261,899...5,396,930 JBrowse link
G Dab2 DAB adaptor protein 2 NOT|acts_upstream_of_or_within ISO (MGI:5319713|PMID:22525672) MGI PMID:22525672 MGI:5319713 NCBI chrNW_004936518:2,915,819...2,936,474 JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3789532|PMID:18403408) MGI PMID:18403408 MGI:3789532 NCBI chrNW_004936787:307,290...309,963 JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936473:18,825,969...18,833,179 JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chrNW_004936469:50,329,564...50,443,532 JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within_positive_effect ISO (MGI:1888607|PMID:10926768) MGI PMID:10926768 MGI:1888607 NCBI chrNW_004936470:28,303,213...28,566,470 JBrowse link
G Gdf1 growth differentiation factor 1 acts_upstream_of_or_within ISO (MGI:3763867|PMID:17936261) MGI PMID:17936261 MGI:3763867 NCBI chrNW_004936596:2,467,428...2,469,213 JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3763867|PMID:17936261)
(MGI:3611720|PMID:16368929)
MGI PMID:16368929 PMID:17936261 MGI:3611720 MGI:3763867 NCBI chrNW_004937847:8,179...16,783 JBrowse link
G Hdac1 histone deacetylase 1 acts_upstream_of_or_within ISO (MGI:3041938|PMID:15060137) MGI PMID:15060137 MGI:3041938 NCBI chrNW_004936474:15,320,635...15,351,418 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:3703395|PMID:16364283) MGI PMID:16364283 MGI:3703395 NCBI chrNW_004936601:2,137,490...2,143,797 JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:1346632|PMID:10518496), (MGI:3807614|PMID:18635606)
(MGI:1346633|PMID:10518495)
MGI PMID:10518495 PMID:10518496 PMID:18635606 MGI:1346632 MGI:1346633 MGI:3807614 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Kif16b kinesin family member 16B involved_in ISO (MGI:4889011|PMID:21238925) UniProt PMID:21238925 MGI:4889011 NCBI chrNW_004936485:3,443,878...3,728,613 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G LOC101960907 uncharacterized LOC101960907 acts_upstream_of_or_within ISO (MGI:1859126|PMID:10825208) MGI PMID:10825208 MGI:1859126 NCBI chrNW_004936471:14,532,888...14,581,258 JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chrNW_004936762:460,342...483,264 JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chrNW_004936526:2,984,900...2,989,494 JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004936509:11,525,764...11,624,833 JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (MGI:1335655|PMID:10208743), (MGI:78065|PMID:8557195) MGI PMID:8557195 PMID:10208743 MGI:1335655 MGI:78065 NCBI chrNW_004936494:10,517,488...10,520,567 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:2682520|PMID:14657333) MGI PMID:14657333 MGI:2682520 NCBI chrNW_004936669:1,292,016...1,334,061 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
G Pax9 paired box 9 acts_upstream_of_or_within ISO (MGI:2178212|PMID:11932925) MGI PMID:11932925 MGI:2178212 NCBI chrNW_004936494:10,657,902...10,673,176 JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chrNW_004936480:14,578,718...14,580,690 JBrowse link
G Pthlh parathyroid hormone like hormone acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chrNW_004936760:197,525...209,212 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004936497:14,723,199...14,812,160 JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004936471:27,080,662...27,185,861 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:1195384|PMID:9420335)
(MGI:5697986|PMID:26494787)
MGI PMID:9420335 PMID:26494787 MGI:1195384 MGI:5697986 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (MGI:4421275|PMID:19913509)
(MGI:2178090|PMID:11973269)
(MGI:4946462|PMID:21146513)
MGI
UniProt
PMID:11973269 PMID:19913509 PMID:21146513 MGI:2178090 MGI:4421275 MGI:4946462 NCBI chrNW_004936496:1,248,582...1,251,406 JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chrNW_004936661:3,742,080...3,758,266 JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chrNW_004936594:2,656,079...2,741,254 JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) MGI PMID:16256739 MGI:3609071 NCBI chrNW_004936531:7,273,681...7,279,394 JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:1341493|PMID:10421635) MGI PMID:10421635 MGI:1341493 NCBI chrNW_004936600:4,004,847...4,010,626 JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:5498579|PMID:23824574)
(MGI:3625553|PMID:12194849)
MGI PMID:12194849 PMID:23824574 MGI:3625553 MGI:5498579 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chrNW_004936787:307,290...309,963 JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in
ISO (MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279)
(MGI:3772748|PMID:18171685)
MGI
UniProt
PMID:18171685 PMID:21245162 PMID:21822279 MGI:3772748 MGI:4887279 MGI:5293253 NCBI chrNW_004936473:18,825,969...18,833,179 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:77407|PMID:8582296) MGI PMID:8582296 MGI:77407 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:3487194|PMID:15355796) MGI PMID:15355796 MGI:3487194 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:3695524|PMID:17151016) MGI PMID:17151016 MGI:3695524 NCBI chrNW_004936526:2,984,900...2,989,494 JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chrNW_004936490:6,262,651...6,264,069 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:5293253|PMID:21822279) MGI PMID:21822279 MGI:5293253 NCBI chrNW_004936497:14,723,199...14,812,160 JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chrNW_004936496:1,248,582...1,251,406 JBrowse link
G Sox7 SRY-box transcription factor 7 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chrNW_004936675:2,616,086...2,622,436 JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chrNW_004936594:2,656,079...2,741,254 JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936730:466,912...680,823 JBrowse link
G Col12a1 collagen type XII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936788:533,811...645,821 JBrowse link
G Col4a2 collagen type IV alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936472:2,270,836...2,416,324 JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936529:348,938...381,701 JBrowse link
G Col8a1 collagen type VIII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936630:3,443,085...3,590,430 JBrowse link
G Fn1 fibronectin 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936586:1,708,803...1,773,372 JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:1315079|PMID:9832509) MGI PMID:9832509 MGI:1315079 NCBI chrNW_004936550:1,814,336...1,844,399 JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chrNW_004936545:3,944,419...3,958,289 JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within ISO (MGI:5553204|PMID:24380799) MGI PMID:24380799 MGI:5553204 NCBI chrNW_004936641:3,911,943...3,916,397 JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (PMID:21828274) BHF-UCL PMID:21828274 NCBI chrNW_004936478:16,878,725...16,884,065 JBrowse link
G Itga4 integrin subunit alpha 4 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936509:10,215,283...10,293,653 JBrowse link
G Itga5 integrin subunit alpha 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936512:11,588,818...11,612,580 JBrowse link
G Itga7 integrin subunit alpha 7 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936646:160,661...179,454 JBrowse link
G Itgav integrin subunit alpha V involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936506:10,750,116...10,839,018 JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936778:1,286,475...1,311,184 JBrowse link
G Itgb5 integrin subunit beta 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936725:417,824...530,993 JBrowse link
G Lamb1 laminin subunit beta 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936479:16,177,200...16,245,268 JBrowse link
G Lamb3 laminin subunit beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936557:3,429,488...3,487,995 JBrowse link
G LOC101971816 laminin subunit alpha-3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936550:3,121,163...3,357,517 JBrowse link
G Mixl1 Mix paired-like homeobox involved_in ISO (MGI:5447921|PMID:19038793) BHF-UCL PMID:19038793 MGI:5447921 NCBI chrNW_004936526:2,984,900...2,989,494 JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936722:1,447,189...1,457,632 JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936475:9,951,876...9,971,631 JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936475:7,801,356...7,825,831 JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936551:5,228,950...5,238,948 JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936514:7,038,240...7,045,873 JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO (PMID:21741376) BHF-UCL PMID:21741376 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (MGI:5908786|PMID:25242323) UniProt PMID:25242323 MGI:5908786 NCBI chrNW_004936596:795,940...898,823 JBrowse link
G Vtn vitronectin involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936538:4,522,275...4,525,245 JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004936638:1,365,457...1,482,497 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3625553|PMID:12194849) MGI PMID:12194849 MGI:3625553 NCBI chrNW_004936473:29,999,542...30,034,610 JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004936528:7,585,937...7,613,022 JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004936471:13,753,061...13,783,990 JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004936661:2,236,121...2,241,086 JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chrNW_004936837:827,568...838,933 JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004936471:4,770,060...4,829,562 JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chrNW_004936550:1,814,336...1,844,399 JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chrNW_004936496:1,248,582...1,251,406 JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin acts_upstream_of_or_within ISO (MGI:4887279|PMID:21245162) MGI PMID:21245162 MGI:4887279 NCBI chrNW_004936473:18,825,969...18,833,179 JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chrNW_004936490:649,551...702,448 JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chrNW_004936496:1,248,582...1,251,406 JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chrNW_004936804:52,435...115,289 JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936473:18,825,969...18,833,179 JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936620:2,966,341...2,969,349 JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936600:3,714,630...3,728,813 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936490:1,324,378...1,332,177 JBrowse link
G Nodal nodal growth differentiation factor involved_in
acts_upstream_of_or_within
ISO (PMID:21741376)
(MGI:2677178|PMID:14511481)
(MGI:2155575|PMID:11311163)
BHF-UCL
MGI
PMID:11311163 PMID:14511481 PMID:21741376 MGI:2155575 MGI:2677178 NCBI chrNW_004936521:8,171,146...8,178,802 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936495:1,433,124...1,449,409 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936497:12,242,869...12,278,012 JBrowse link
G Ssbp3 single stranded DNA binding protein 3 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004936522:6,802,057...6,957,640 JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO (MGI:5784967|PMID:24733888) UniProt PMID:24733888 MGI:5784967 NCBI chrNW_004936495:12,045,679...12,050,737 JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936669:2,474,381...2,613,541 JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004936506:8,739,475...8,873,073 JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:4441249 NCBI chrNW_004936483:15,533,264...15,534,576 JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971629 core histone macro-H2A.1 involved_in ISO (PMID:23595991) UniProt PMID:23595991 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004936787:307,290...309,963 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12063
    developmental process 5696
      anatomical structure development 5327
        tissue development 1841
          endoderm development 80
            endoderm formation + 50
            mesendoderm development + 11
paths to the root