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ONTOLOGY REPORT - ANNOTATIONS

Term:endoderm development
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Accession:GO:0007492 term browser browse the term
Definition:The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.

show annotations for term's descendants           Sort by:
 
endoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity-regulated cytoskeleton-associated protein acts_upstream_of_or_within ISO MGI:2386454 (MGI:1355000|PMID:10727859) RGD PMID:10727859 MGI:1355000 NCBI chr 7:115,907,097...115,911,059
Ensembl chr 7:115,907,097...115,910,541 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:5705244|PMID:24835669)		 Ensembl
RGD		 PMID:24835669 GO_REF:0000107 MGI:5705244 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158342 (MGI:3051920|PMID:15136140) RGD PMID:15136140 MGI:3051920 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512 		JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO MGI:3841299 (MGI:3840601|PMID:18974875) RGD PMID:18974875 MGI:3840601 NCBI chr10:95,248,573...95,350,162
Ensembl chr10:95,250,294...95,349,789 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO MGI:97451 (MGI:2136711|PMID:11412024) RGD PMID:11412024 MGI:2136711 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024 		JBrowse link
G Dab2 DAB adaptor protein 2 NOT|acts_upstream_of_or_within ISO (MGI:5319713|PMID:22525672) RGD PMID:22525672 MGI:5319713 NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO MGI:2387760 (MGI:3789532|PMID:18403408) RGD PMID:18403408 MGI:3789532 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
Ensembl chr 1:248,895,738...248,898,607 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 ISO MGI:1888710 (MGI:1888607|PMID:10926768) RGD PMID:10926768 MGI:1888607 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068 		JBrowse link
G Gdf1 growth differentiation factor 1 acts_upstream_of_or_within ISO MGI:95686 (MGI:3763867|PMID:17936261) RGD PMID:17936261 MGI:3763867 NCBI chr16:20,845,580...20,860,789
Ensembl chr16:20,845,576...20,860,767 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO MGI:3612535|MGI:95683 (MGI:3611720|PMID:16368929), (MGI:3763867|PMID:17936261) RGD PMID:16368929 PMID:17936261 MGI:3611720 MGI:3763867 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998 		JBrowse link
G Hdac1 histone deacetylase 1 acts_upstream_of_or_within ISO (MGI:3041938|PMID:15060137) RGD PMID:15060137 MGI:3041938 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:2177762 (MGI:3703395|PMID:16364283) RGD PMID:16364283 MGI:3703395 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856|MGI:2181390 (MGI:1346632|PMID:10518496), (MGI:1346633|PMID:10518495), (MGI:3807614|PMID:18635606) RGD PMID:10518495 PMID:10518496 PMID:18635606 MGI:1346632 MGI:1346633 MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902 		JBrowse link
G Kif16b kinesin family member 16B involved_in ISO (MGI:4889011|PMID:21238925) RGD PMID:21238925 MGI:4889011 NCBI chr 3:136,596,621...136,936,809
Ensembl chr 3:136,657,480...136,936,674 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO MGI:4839486 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 acts_upstream_of_or_within ISO MGI:2387828 (MGI:2181739|PMID:12117810) RGD PMID:12117810 MGI:2181739 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857494 (MGI:1335655|PMID:10208743), (MGI:78065|PMID:8557195)		 Ensembl
RGD		 PMID:8557195 PMID:10208743 GO_REF:0000107 MGI:1335655 MGI:78065 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) RGD PMID:24835669 MGI:5705244 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:2684314 (MGI:2682520|PMID:14657333) RGD PMID:14657333 MGI:2682520 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025 		JBrowse link
G Onecut1 one cut homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2179340 (MGI:1859126|PMID:10825208)		 Ensembl
RGD		 PMID:10825208 GO_REF:0000107 MGI:1859126 NCBI chr 8:81,765,779...81,799,894
Ensembl chr 8:81,766,041...81,793,577 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:109448 (MGI:2136711|PMID:11412024) RGD PMID:11412024 MGI:2136711 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
Ensembl chr15:25,502,019...25,505,691 		JBrowse link
G Pax9 paired box 9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857887 (MGI:2178212|PMID:11932925)		 Ensembl
RGD		 PMID:11932925 GO_REF:0000107 MGI:2178212 NCBI chr 6:77,607,705...77,624,453
Ensembl chr 6:77,608,624...77,621,719 		JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO MGI:3764519|MGI:5705245 (MGI:5705244|PMID:24835669) RGD PMID:24835669 MGI:5705244 NCBI chr 2:47,266,758...47,268,526
Ensembl chr 2:47,266,738...47,268,625 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:1326851 NCBI chr 4:181,663,425...181,674,181 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO MGI:1858049|MGI:2656539|MGI:5698524 (MGI:1195384|PMID:9420335), (MGI:5697986|PMID:26494787) RGD PMID:9420335 PMID:26494787 MGI:1195384 MGI:5697986 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in		 ISO MGI:2179440|MGI:3717121 (MGI:4421275|PMID:19913509), (MGI:4946462|PMID:21146513)
(MGI:2178090|PMID:11973269)		 RGD PMID:11973269 PMID:19913509 PMID:21146513 MGI:2178090 MGI:4421275 MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) RGD PMID:9921650 MGI:1326851 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO MGI:4124681 (MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:5315650 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) RGD PMID:16256739 MGI:3609071 NCBI chr18:27,331,236...27,336,829
Ensembl chr18:27,331,236...27,336,829 		JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:2150346 (MGI:1341493|PMID:10421635) RGD PMID:10421635 MGI:1341493 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831 		JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO MGI:1858007|MGI:2148567|MGI:4418897 (MGI:3625553|PMID:12194849), (MGI:5498579|PMID:23824574) RGD PMID:12194849 PMID:23824574 MGI:3625553 MGI:5498579 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
Ensembl chr 1:248,895,738...248,898,607 		JBrowse link
G Dusp1 dual specificity phosphatase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:16,970,642...16,973,425
Ensembl chr10:16,970,626...16,973,418 		JBrowse link
G Dusp2 dual specificity phosphatase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:119,776,925...119,779,110
Ensembl chr 3:119,776,925...119,779,099 		JBrowse link
G Dusp4 dual specificity phosphatase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:61,080,767...61,090,973
Ensembl chr16:61,078,175...61,091,169 		JBrowse link
G Dusp5 dual specificity phosphatase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:274,245,184...274,258,595
Ensembl chr 1:274,245,184...274,258,595 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in		 ISO MGI:3774028 (MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279)
(MGI:3772748|PMID:18171685)		 RGD PMID:18171685 PMID:21245162 PMID:21822279 MGI:3772748 MGI:4887279 MGI:5293253 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO MGI:2179511 (MGI:77407|PMID:8582296) RGD PMID:8582296 MGI:77407 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857848 (MGI:3487194|PMID:15355796)		 UniProt
RGD		 PMID:15355796 GO_REF:0000024 MGI:3487194 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:2387829 (MGI:3695524|PMID:17151016)		 RGD PMID:17151016, PMID:21873635 MGI:3695524, RGD:13792537 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426 		JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:4415813|PMID:18462699)		 Ensembl
RGD		 PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:5293253|PMID:21822279) RGD PMID:21822279 MGI:5293253 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:18682240) RGD PMID:18682240 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907 		JBrowse link
G Sox7 SRY-box transcription factor 7 involved_in ISO (PMID:18682240) RGD PMID:18682240 NCBI chr15:47,293,699...47,300,460
Ensembl chr15:47,293,699...47,300,460 		JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO MGI:4124681 (MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:5315650 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043 		JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523 		JBrowse link
G Col12a1 collagen type XII alpha 1 chain involved_in IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
(PMID:23154389)		 Ensembl
RGD		 PMID:23154389, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:87,042,820...87,150,701
Ensembl chr 8:87,040,799...87,158,368 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr16:83,386,388...83,522,169
Ensembl chr16:83,387,364...83,438,561 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr20:12,657,913...12,676,370
Ensembl chr20:12,658,065...12,675,561 		JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 8:117,694,441...117,726,844
Ensembl chr 8:117,694,605...117,726,844 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr11:44,877,690...45,006,203
Ensembl chr11:44,877,859...45,007,891 		JBrowse link
G Fn1 fibronectin 1 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078 		JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO MGI:2177785 (MGI:1315079|PMID:9832509) RGD PMID:9832509 MGI:1315079 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS		 (PMID:17624332)
GO_REF:0000024		 RGD
UniProt		 PMID:17624332 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408 		JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within ISO (MGI:5553204|PMID:24380799) RGD PMID:24380799 MGI:5553204 NCBI chr19:51,985,196...51,989,528
Ensembl chr19:51,985,170...51,989,544 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (PMID:21828274) RGD PMID:21828274 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496 		JBrowse link
G Itga4 integrin subunit alpha 4 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:66,178,745...66,265,547
Ensembl chr 3:66,193,059...66,263,960 		JBrowse link
G Itga5 integrin subunit alpha 5 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 7:144,970,444...144,993,652
Ensembl chr 7:144,970,444...144,993,652 		JBrowse link
G Itga7 integrin subunit alpha 7 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 7:3,355,079...3,383,886
Ensembl chr 7:3,355,116...3,384,675 		JBrowse link
G Itgav integrin subunit alpha V involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:71,113,269...71,205,958
Ensembl chr 3:71,114,100...71,202,411 		JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr20:11,777,773...11,815,647
Ensembl chr20:11,777,783...11,815,647 		JBrowse link
G Itgb5 integrin subunit beta 5 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr11:70,056,500...70,172,164
Ensembl chr11:70,056,500...70,172,372 		JBrowse link
G Lama3 laminin subunit alpha 3 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr18:3,704,866...3,941,215
Ensembl chr18:3,705,916...3,940,838 		JBrowse link
G Lamb1 laminin subunit beta 1 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079 		JBrowse link
G Lamb3 laminin subunit beta 3 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr13:112,031,614...112,073,187
Ensembl chr13:112,031,594...112,073,186 		JBrowse link
G Mixl1 Mix paired-like homeobox 1 involved_in ISO (MGI:5447921|PMID:19038793) RGD PMID:19038793 MGI:5447921 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426 		JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655 		JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr19:10,079,881...10,101,380
Ensembl chr19:10,079,765...10,101,451 		JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611 		JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23154389)		 Ensembl
RGD		 PMID:23154389 GO_REF:0000107 NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702 		JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in IEA
ISO		 GO_REF:0000107
(PMID:23154389)		 Ensembl
RGD		 PMID:23154389 GO_REF:0000107 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520 		JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO (PMID:21741376) RGD PMID:21741376 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (MGI:5908786|PMID:25242323) RGD PMID:25242323 MGI:5908786 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224 		JBrowse link
G Vtn vitronectin involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:65,767,960...65,771,040
Ensembl chr10:65,767,053...65,771,038 		JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:3849235|PMID:19345177)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:19345177 GO_REF:0000024 GO_REF:0000107 MGI:3849235 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1858007|MGI:2148567 (MGI:3625553|PMID:12194849)		 Ensembl
RGD		 PMID:12194849 GO_REF:0000107 MGI:3625553 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:3849235 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(MGI:3849235|PMID:19345177)		 UniProt
RGD		 PMID:19345177 GO_REF:0000024 MGI:3849235 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISS
ISO		 GO_REF:0000024
(MGI:3849235|PMID:19345177)		 UniProt
RGD		 PMID:19345177 GO_REF:0000024 MGI:3849235 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) involved_in ISO (MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:3849235 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941 		JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:4442295|PMID:20308546)		 Ensembl
RGD		 PMID:20308546 GO_REF:0000107 MGI:4442295 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4442295|PMID:20308546) RGD PMID:20308546 MGI:4442295 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907 		JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:3774028 (MGI:4887279|PMID:21245162)		 RGD PMID:21245162, PMID:21873635 MGI:4887279, RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902 		JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) RGD PMID:21305474 MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907 		JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158342 (MGI:3051920|PMID:15136140) RGD PMID:15136140 MGI:3051920 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Nodal nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 ISO (PMID:21741376)
MGI:2158732 (MGI:2155575|PMID:11311163), (MGI:2677178|PMID:14511481)		 RGD PMID:11311163 PMID:14511481 PMID:21741376 MGI:2155575 MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787) RGD PMID:26494787 MGI:5697986 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
Ensembl chr15:25,502,019...25,505,691 		JBrowse link
G Smad4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)		 Ensembl
RGD		 PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199 		JBrowse link
G Ssbp3 single stranded DNA binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)		 Ensembl
RGD		 PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chr 5:126,511,339...126,649,830
Ensembl chr 5:126,511,350...126,648,661 		JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5784967|PMID:24733888)		 UniProt
RGD		 PMID:24733888 GO_REF:0000024 MGI:5784967 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074 		JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO
IEA		 (PMID:23154389)
GO_REF:0000107		 RGD
Ensembl		 PMID:23154389 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564 		JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:4441249 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908 		JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone involved_in ISO (PMID:23595991) RGD PMID:23595991 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678 		JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
Ensembl chr 1:248,895,738...248,898,607 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19638
    developmental process 6777
      anatomical structure development 6250
        tissue development 2061
          endoderm development 85
            endoderm formation + 54
            mesendoderm development + 11
paths to the root