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ONTOLOGY REPORT - ANNOTATIONS


Term:endoderm development
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Accession:GO:0007492 term browser browse the term
Definition:The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.


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endoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angpt1 angiopoietin 1 acts_upstream_of_or_within TAS (MGI:1332308|PMID:10051567) MGI PMID:10051567 MGI:1332308 NCBI chr15:42,424,667...42,676,977
Ensembl chr15:42,424,723...42,676,977
JBrowse link
G Angpt2 angiopoietin 2 acts_upstream_of_or_within TAS (MGI:1332308|PMID:10051567) MGI PMID:10051567 MGI:1332308 NCBI chr 8:18,690,263...18,741,562
Ensembl chr 8:18,690,263...18,741,562
JBrowse link
G Angpt4 angiopoietin 4 acts_upstream_of_or_within TAS (MGI:1332308|PMID:10051567) MGI PMID:10051567 MGI:1332308 NCBI chr 2:151,911,207...151,945,337
Ensembl chr 2:151,911,210...151,945,337
JBrowse link
G Ankrd17 ankyrin repeat domain 17 acts_upstream_of_or_within TAS (MGI:1930320|PMID:11165478) MGI PMID:11165478 MGI:1930320 NCBI chr 5:90,227,166...90,368,693
Ensembl chr 5:90,227,166...90,366,577
JBrowse link
G Arc activity regulated cytoskeletal-associated protein acts_upstream_of_or_within IMP (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chr15:74,669,081...74,672,570
Ensembl chr15:74,669,083...74,672,570
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IDA (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within IMP (MGI:3840601|PMID:18974875) MGI PMID:18974875 MGI:3840601 NCBI chr11:107,033,081...107,132,147
Ensembl chr11:107,033,081...107,132,127
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within IGI (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chr 1:34,535,648...34,544,311
Ensembl chr 1:34,535,648...34,544,313
JBrowse link
G Dab2 disabled 2, mitogen-responsive phosphoprotein NOT|acts_upstream_of_or_within IMP (MGI:5319713|PMID:22525672) MGI PMID:22525672 MGI:5319713 NCBI chr15:6,299,788...6,440,715
Ensembl chr15:6,299,788...6,440,712
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IMP (MGI:3789532|PMID:18403408) MGI PMID:18403408 MGI:3789532 NCBI chr19:30,545,876...30,549,496
Ensembl chr19:30,545,863...30,549,665
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 9:118,478,186...118,486,132
Ensembl chr 9:118,478,212...118,486,132
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within_positive_effect IMP (MGI:1888607|PMID:10926768) MGI PMID:10926768 MGI:1888607 NCBI chr15:53,068,261...53,346,183
Ensembl chr15:53,064,038...53,346,159
JBrowse link
G Gdf1 growth differentiation factor 1 acts_upstream_of_or_within IGI (MGI:3763867|PMID:17936261) MGI PMID:17936261 MGI:3763867 NCBI chr 8:70,315,775...70,331,592
Ensembl chr 8:70,315,775...70,331,592
Ensembl chr 8:70,315,775...70,331,592
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within IGI
IMP
(MGI:3763867|PMID:17936261)
(MGI:3611720|PMID:16368929)
MGI PMID:16368929 PMID:17936261 MGI:3611720 MGI:3763867 NCBI chr 6:122,605,403...122,610,087
Ensembl chr 6:122,605,403...122,610,087
JBrowse link
G Hdac1 histone deacetylase 1 acts_upstream_of_or_within IDA
IMP
(MGI:3041938|PMID:15060137) MGI PMID:15060137 MGI:3041938 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within IMP (MGI:3703395|PMID:16364283) MGI PMID:16364283 MGI:3703395 NCBI chr19:37,434,841...37,440,731
Ensembl chr19:37,434,810...37,440,731
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (MGI:1346632|PMID:10518496), (MGI:3807614|PMID:18635606)
(MGI:1346633|PMID:10518495)
MGI PMID:10518495 PMID:10518496 PMID:18635606 MGI:1346632 MGI:1346633 MGI:3807614 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Kif16b kinesin family member 16B involved_in IMP (MGI:4889011|PMID:21238925) UniProt PMID:21238925 MGI:4889011 NCBI chr 2:142,618,340...142,901,609
Ensembl chr 2:142,617,474...142,901,531
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within IMP (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:101,274,091...101,298,934
Ensembl chr  X:101,274,030...101,297,465
JBrowse link
G Mixl1 Mix1 homeobox-like 1 (Xenopus laevis) acts_upstream_of_or_within IMP (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chr 1:180,693,043...180,697,034
Ensembl chr 1:180,693,043...180,697,034
JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within IMP (MGI:1335655|PMID:10208743), (MGI:78065|PMID:8557195) MGI PMID:8557195 PMID:10208743 MGI:1335655 MGI:78065 NCBI chr12:56,531,935...56,536,908
Ensembl chr12:56,531,958...56,536,908
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in TAS (MGI:1267297|PMID:9621431) BHF-UCL PMID:9621431 MGI:1267297 NCBI chr17:26,838,664...26,844,988
Ensembl chr17:26,838,664...26,845,009
JBrowse link
G Nodal nodal acts_upstream_of_or_within IMP (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Nog noggin acts_upstream_of_or_within IDA (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Notch1 notch 1 acts_upstream_of_or_within IMP (MGI:2682520|PMID:14657333) MGI PMID:14657333 MGI:2682520 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Onecut1 one cut domain, family member 1 acts_upstream_of_or_within IMP (MGI:1859126|PMID:10825208) MGI PMID:10825208 MGI:1859126 NCBI chr 9:74,861,921...74,889,648
Ensembl chr 9:74,861,921...74,891,781
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IGI (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Pax9 paired box 9 acts_upstream_of_or_within IMP (MGI:2178212|PMID:11932925) MGI PMID:11932925 MGI:2178212 NCBI chr12:56,691,693...56,712,824
Ensembl chr12:56,691,767...56,712,822
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within IDA
IMP
(MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr13:115,088,355...115,090,158
Ensembl chr13:115,088,355...115,090,186
JBrowse link
G Pthlh parathyroid hormone-like peptide acts_upstream_of_or_within IDA (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chr 6:147,252,109...147,264,013
Ensembl chr 6:147,252,101...147,264,183
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IGI (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IGI (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IMP (MGI:1195384|PMID:9420335)
(MGI:5697986|PMID:26494787)
MGI PMID:9420335 PMID:26494787 MGI:1195384 MGI:5697986 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 acts_upstream_of_or_within
involved_in
IMP (MGI:4421275|PMID:19913509)
(MGI:2178090|PMID:11973269)
(MGI:4946462|PMID:21146513)
MGI
UniProt
PMID:11973269 PMID:19913509 PMID:21146513 MGI:2178090 MGI:4421275 MGI:4946462 NCBI chr 1:4,490,928...4,497,426
Ensembl chr 1:4,490,931...4,497,354
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within IDA (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tnrc6c trinucleotide repeat containing 6C acts_upstream_of_or_within IMP (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr11:117,653,703...117,763,439
Ensembl chr11:117,654,289...117,763,439
JBrowse link
G Wnt8a wingless-type MMTV integration site family, member 8A acts_upstream_of_or_within IMP (MGI:3609071|PMID:16256739) MGI PMID:16256739 MGI:3609071 NCBI chr18:34,542,327...34,548,061
Ensembl chr18:34,542,313...34,548,273
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (MGI:1341493|PMID:10421635) MGI PMID:10421635 MGI:1341493 NCBI chr19:45,736,491...45,742,941
Ensembl chr19:45,736,798...45,742,915
JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:5498579|PMID:23824574)
(MGI:3625553|PMID:12194849)
MGI PMID:12194849 PMID:23824574 MGI:3625553 MGI:5498579 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IDA (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr19:30,545,876...30,549,496
Ensembl chr19:30,545,863...30,549,665
JBrowse link
G Dusp1 dual specificity phosphatase 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:26,505,591...26,508,472
Ensembl chr17:26,505,590...26,562,128
JBrowse link
G Dusp2 dual specificity phosphatase 2 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:127,336,159...127,338,377
Ensembl chr 2:127,336,159...127,338,376
JBrowse link
G Dusp4 dual specificity phosphatase 4 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:34,807,610...34,819,894
Ensembl chr 8:34,807,297...34,819,894
JBrowse link
G Dusp5 dual specificity phosphatase 5 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:53,529,145...53,541,809
Ensembl chr19:53,529,109...53,542,431
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within
involved_in
IMP (MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279)
(MGI:3772748|PMID:18171685)
MGI
UniProt
PMID:18171685 PMID:21245162 PMID:21822279 MGI:3772748 MGI:4887279 MGI:5293253 NCBI chr 9:118,478,186...118,486,132
Ensembl chr 9:118,478,212...118,486,132
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (MGI:77407|PMID:8582296) MGI PMID:8582296 MGI:77407 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IMP (MGI:3487194|PMID:15355796) MGI PMID:15355796 MGI:3487194 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Mixl1 Mix1 homeobox-like 1 (Xenopus laevis) involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3695524|PMID:17151016)
GO_Central
MGI
PMID:17151016 PMID:21873635 MGI:3695524 MGI:6201960 NCBI chr 1:180,693,043...180,697,034
Ensembl chr 1:180,693,043...180,697,034
JBrowse link
G Nog noggin acts_upstream_of_or_within IDA (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IMP (MGI:5293253|PMID:21822279) MGI PMID:21822279 MGI:5293253 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:4,490,928...4,497,426
Ensembl chr 1:4,490,931...4,497,354
JBrowse link
G Sox7 SRY (sex determining region Y)-box 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:63,943,706...63,950,732
Ensembl chr14:63,943,673...63,950,732
JBrowse link
G Tnrc6c trinucleotide repeat containing 6C acts_upstream_of_or_within IMP (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr11:117,653,703...117,763,439
Ensembl chr11:117,654,289...117,763,439
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen, type XI, alpha 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 3:114,030,479...114,220,756
Ensembl chr 3:114,030,540...114,220,718
JBrowse link
G Col12a1 collagen, type XII, alpha 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:79,598,987...79,721,141
Ensembl chr 9:79,598,991...79,718,831
JBrowse link
G Col4a2 collagen, type IV, alpha 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 8:11,312,805...11,449,287
Ensembl chr 8:11,312,805...11,449,287
JBrowse link
G Col6a1 collagen, type VI, alpha 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr10:76,708,792...76,726,044
Ensembl chr10:76,708,792...76,726,168
JBrowse link
G Col7a1 collagen, type VII, alpha 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 9:108,953,586...108,984,875
Ensembl chr 9:108,953,586...108,984,875
JBrowse link
G Col8a1 collagen, type VIII, alpha 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr16:57,624,256...57,754,737
Ensembl chr16:57,624,258...57,754,737
JBrowse link
G Fn1 fibronectin 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:71,585,473...71,653,280
Ensembl chr 1:71,585,520...71,653,200
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within IMP (MGI:1315079|PMID:9832509) MGI PMID:9832509 MGI:1315079 NCBI chr18:11,052,510...11,085,636
Ensembl chr18:11,052,064...11,085,635
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within IMP (MGI:5553204|PMID:24380799) MGI PMID:24380799 MGI:5553204 NCBI chr 8:119,344,538...119,348,929
Ensembl chr 8:119,344,488...119,348,922
JBrowse link
G Inhba inhibin beta-A involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:16,004,256...16,031,609
Ensembl chr13:16,011,851...16,031,621
JBrowse link
G Itga4 integrin alpha 4 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:79,255,426...79,333,114
Ensembl chr 2:79,255,426...79,333,123
JBrowse link
G Itga5 integrin alpha 5 (fibronectin receptor alpha) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:103,344,286...103,366,791
Ensembl chr15:103,344,286...103,366,763
JBrowse link
G Itga7 integrin alpha 7 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr10:128,933,421...128,958,286
Ensembl chr10:128,933,818...128,958,282
JBrowse link
G Itgav integrin alpha V involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:83,722,303...83,806,917
Ensembl chr 2:83,724,397...83,806,916
JBrowse link
G Itgb2 integrin beta 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr10:77,530,329...77,565,708
Ensembl chr10:77,530,252...77,565,708
JBrowse link
G Itgb5 integrin beta 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr16:33,829,665...33,949,338
Ensembl chr16:33,829,665...33,949,338
JBrowse link
G Lama3 laminin, alpha 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr18:12,333,417...12,583,013
Ensembl chr18:12,333,819...12,583,013
JBrowse link
G Lamb1 laminin B1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr12:31,265,146...31,329,644
Ensembl chr12:31,265,234...31,329,644
JBrowse link
G Lamb3 laminin, beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 1:193,294,353...193,343,878
Ensembl chr 1:193,207,699...193,343,878
JBrowse link
G Mixl1 Mix1 homeobox-like 1 (Xenopus laevis) involved_in IDA (MGI:5447921|PMID:19038793) BHF-UCL PMID:19038793 MGI:5447921 NCBI chr 1:180,693,043...180,697,034
Ensembl chr 1:180,693,043...180,697,034
JBrowse link
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr14:54,431,598...54,442,456
Ensembl chr14:54,431,612...54,445,364
JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 8:95,352,296...95,374,293
Ensembl chr 8:95,352,268...95,375,080
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 8:92,827,290...92,853,421
Ensembl chr 8:92,827,291...92,853,420
JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 9:7,558,429...7,568,486
Ensembl chr 9:7,558,456...7,568,485
JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 2:164,940,326...164,955,850
Ensembl chr 2:164,940,780...164,955,850
JBrowse link
G Nodal nodal involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Setd2 SET domain containing 2 involved_in IMP (MGI:5908786|PMID:25242323) UniProt PMID:25242323 MGI:5908786 NCBI chr 9:110,532,500...110,618,633
Ensembl chr 9:110,532,597...110,618,633
JBrowse link
G Vtn vitronectin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:78,499,120...78,502,325
Ensembl chr11:78,499,091...78,502,324
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73, Paf1/RNA polymerase II complex component involved_in IMP (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr 1:143,603,276...143,702,893
Ensembl chr 1:143,598,800...143,702,893
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:3625553|PMID:12194849) MGI PMID:12194849 MGI:3625553 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in IMP (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr 7:111,028,951...111,056,377
Ensembl chr 7:111,028,951...111,056,377
JBrowse link
G Leo1 Leo1, Paf1/RNA polymerase II complex component involved_in IMP (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr 9:75,441,015...75,466,432
Ensembl chr 9:75,441,524...75,466,432
JBrowse link
G Paf1 Paf1, RNA polymerase II complex component involved_in IMP (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr 7:28,392,996...28,399,383
Ensembl chr 7:28,392,951...28,399,388
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 acts_upstream_of_or_within IDA (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chr17:35,506,032...35,510,777
Ensembl chr17:35,506,018...35,510,772
JBrowse link
G Rtf1 RTF1, Paf1/RNA polymerase II complex component involved_in IMP (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr 2:119,675,068...119,735,407
Ensembl chr 2:119,675,068...119,735,407
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 acts_upstream_of_or_within IDA (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chr18:11,052,510...11,085,636
Ensembl chr18:11,052,064...11,085,635
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 acts_upstream_of_or_within IDA (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chr 1:4,490,928...4,497,426
Ensembl chr 1:4,490,931...4,497,354
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:4887279|PMID:21245162)
GO_Central
MGI
PMID:21245162 PMID:21873635 MGI:4887279 MGI:6201960 NCBI chr 9:118,478,186...118,486,132
Ensembl chr 9:118,478,212...118,486,132
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Nanog Nanog homeobox acts_upstream_of_or_within ISO (MGI:4887279|PMID:21245162) MGI PMID:21245162 MGI:4887279 NCBI chr 6:122,707,489...122,714,633
Ensembl chr 6:122,707,489...122,714,633
JBrowse link
G Pou5f1 POU domain, class 5, transcription factor 1 acts_upstream_of_or_within ISO (MGI:4887279|PMID:21245162) MGI PMID:21245162 MGI:4887279 NCBI chr17:35,506,032...35,510,777
Ensembl chr17:35,506,018...35,510,772
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 involved_in IMP (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chr 1:4,490,928...4,497,426
Ensembl chr 1:4,490,931...4,497,354
JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 acts_upstream_of_or_within ISO (MGI:4887279|PMID:21245162) MGI PMID:21245162 MGI:4887279 NCBI chr 3:34,649,995...34,652,461
Ensembl chr 3:34,650,405...34,652,461
JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 9:118,478,186...118,486,132
Ensembl chr 9:118,478,212...118,486,132
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr19:46,031,525...46,048,145
Ensembl chr19:46,031,570...46,045,214
JBrowse link
G Lhx1 LIM homeobox protein 1 acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr11:84,517,975...84,525,534
Ensembl chr11:84,518,284...84,525,535
JBrowse link
G Nodal nodal acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:2155575|PMID:11311163)
(MGI:2677178|PMID:14511481)
MGI PMID:11311163 PMID:14511481 GO_REF:0000096 MGI:2155575 MGI:2677178 MGI:4834177 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Ssbp3 single-stranded DNA binding protein 3 acts_upstream_of_or_within IMP (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 4:106,911,470...107,049,694
Ensembl chr 4:106,910,701...107,049,694
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IDA (MGI:5784967|PMID:24733888) UniProt PMID:24733888 MGI:5784967 NCBI chr12:80,107,760...80,113,013
Ensembl chr12:80,107,754...80,113,013
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen, type V, alpha 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:27,886,381...28,039,510
Ensembl chr 2:27,886,425...28,039,514
JBrowse link
G Col5a2 collagen, type V, alpha 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:45,374,331...45,503,282
Ensembl chr 1:45,374,321...45,503,282
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior 1 involved_in IDA (MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:4441249 NCBI chr 7:79,792,241...79,793,590
Ensembl chr 7:79,792,241...79,793,788
JBrowse link
G Nanog Nanog homeobox involved_in TAS (MGI:3690198|PMID:16501172) HGNC-UCL PMID:16501172 MGI:3690198 NCBI chr 6:122,707,489...122,714,633
Ensembl chr 6:122,707,489...122,714,633
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:56,073,622...56,135,626
Ensembl chr13:56,073,619...56,136,361
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:30,545,876...30,549,496
Ensembl chr19:30,545,863...30,549,665
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23325
    developmental process 7068
      anatomical structure development 6540
        tissue development 2114
          endoderm development 92
            endoderm formation + 56
            mesendoderm development + 11
paths to the root