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ONTOLOGY REPORT - ANNOTATIONS


Term:endoderm development
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Accession:GO:0007492 term browser browse the term
Definition:The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.


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endoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARC activity regulated cytoskeleton associated protein acts_upstream_of_or_within ISO (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chr13:36,743,027...36,744,266 JBrowse link
G B9D2 B9 domain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1326851|PMID:9921650) Ensembl
MGI
PMID:9921650 GO_REF:0000107 MGI:1326851 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5705244|PMID:24835669) Ensembl
MGI
PMID:24835669 GO_REF:0000107 MGI:5705244 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G BPTF bromodomain PHD finger transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3840601|PMID:18974875) Ensembl
MGI
PMID:18974875 GO_REF:0000107 MGI:3840601 NCBI chr 9:12,586,107...12,703,296
Ensembl chr 9:12,590,333...12,703,422
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3789532|PMID:18403408) MGI PMID:18403408 MGI:3789532 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821807|PMID:18794329) Ensembl
MGI
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr19:29,916,994...30,063,243
Ensembl chr19:29,921,636...30,063,216
JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within_positive_effect
IEA
ISO
(MGI:1888607|PMID:10926768) Ensembl
MGI
PMID:10926768 GO_REF:0000107 MGI:1888607 NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469
JBrowse link
G GDF1 growth differentiation factor 1 acts_upstream_of_or_within ISO (MGI:3763867|PMID:17936261) MGI PMID:17936261 MGI:3763867 NCBI chr20:44,233,304...44,234,072 JBrowse link
G GDF3 growth differentiation factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3763867|PMID:17936261)
(MGI:3611720|PMID:16368929)
Ensembl
MGI
PMID:16368929 PMID:17936261 GO_REF:0000107 MGI:3611720 MGI:3763867 NCBI chr27:37,125,845...37,129,567
Ensembl chr27:37,125,928...37,129,484
JBrowse link
G HDAC1 histone deacetylase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3041938|PMID:15060137) Ensembl
MGI
PMID:15060137 GO_REF:0000107 MGI:3041938 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186
JBrowse link
G HHEX hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:3703395|PMID:16364283) MGI PMID:16364283 MGI:3703395 NCBI chr28:7,057,379...7,063,326
Ensembl chr28:7,057,283...7,063,330
JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:1346632|PMID:10518496), (MGI:3807614|PMID:18635606)
(MGI:1346633|PMID:10518495)
MGI PMID:10518495 PMID:10518496 PMID:18635606 MGI:1346632 MGI:1346633 MGI:3807614 NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993
JBrowse link
G KIF16B kinesin family member 16B involved_in ISO (MGI:4889011|PMID:21238925) UniProt PMID:21238925 MGI:4889011 NCBI chr24:6,260,558...6,576,544
Ensembl chr24:6,261,553...6,575,845
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
G LOC609557 cryptic protein acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chr19:20,318,937...20,384,369 JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4839544|PMID:20589884) Ensembl
MGI
PMID:20589884 GO_REF:0000107 MGI:4839544 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992
JBrowse link
G MIXL1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chr 7:38,651,481...38,652,560 JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr36:25,965,243...26,054,775
Ensembl chr36:25,965,938...26,054,760
JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1335655|PMID:10208743), (MGI:78065|PMID:8557195) Ensembl
MGI
PMID:8557195 PMID:10208743 GO_REF:0000107 MGI:1335655 MGI:78065
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
G NOG noggin acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2682520|PMID:14657333) Ensembl
MGI
PMID:14657333 GO_REF:0000107 MGI:2682520 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
G ONECUT1 one cut homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1859126|PMID:10825208) Ensembl
MGI
PMID:10825208 GO_REF:0000107 MGI:1859126 NCBI chr30:18,384,533...18,425,940
Ensembl chr30:18,387,130...18,425,497
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446
JBrowse link
G PAX9 paired box 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2178212|PMID:11932925) Ensembl
MGI
PMID:11932925 GO_REF:0000107 MGI:2178212 NCBI chr 8:15,221,852...15,239,629
Ensembl chr 8:15,221,730...15,239,099
JBrowse link
G PELO pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr 4:62,440,923...62,443,598 JBrowse link
G PTHLH parathyroid hormone like hormone acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chr27:19,781,557...19,795,078
Ensembl chr27:19,781,557...19,795,078
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983
JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618021|PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787)
(MGI:1195384|PMID:9420335)
MGI PMID:9420335 PMID:26494787 MGI:1195384 MGI:5697986 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405
JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (MGI:4421275|PMID:19913509)
(MGI:2178090|PMID:11973269)
(MGI:4946462|PMID:21146513)
MGI
UniProt
PMID:11973269 PMID:19913509 PMID:21146513 MGI:2178090 MGI:4421275 MGI:4946462 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471
JBrowse link
G WNT8A Wnt family member 8A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3609071|PMID:16256739) Ensembl
MGI
PMID:16256739 GO_REF:0000107 MGI:3609071 NCBI chr11:25,707,058...25,752,724
Ensembl chr11:25,744,780...25,749,748
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1341493|PMID:10421635) Ensembl
MGI
PMID:10421635 GO_REF:0000107 MGI:1341493 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:5498579|PMID:23824574)
(MGI:3625553|PMID:12194849)
MGI PMID:12194849 PMID:23824574 MGI:3625553 MGI:5498579 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
JBrowse link
G DUSP1 dual specificity phosphatase 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:39,588,833...39,591,065
Ensembl chr 4:39,588,339...39,590,514
JBrowse link
G DUSP2 dual specificity phosphatase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:34,586,635...34,589,076
Ensembl chr17:34,586,716...34,588,453
JBrowse link
G DUSP4 dual specificity phosphatase 4 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr16:34,801,869...34,814,111 JBrowse link
G DUSP5 dual specificity phosphatase 5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:21,829,891...21,844,590
Ensembl chr28:21,829,921...21,841,454
JBrowse link
G EOMES eomesodermin involved_in
acts_upstream_of_or_within
ISO (MGI:3772748|PMID:18171685)
(MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279)
UniProt
MGI
PMID:18171685 PMID:21245162 PMID:21822279 MGI:3772748 MGI:4887279 MGI:5293253 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:77407|PMID:8582296) MGI PMID:8582296 MGI:77407 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3487194|PMID:15355796) UniProt
MGI
PMID:15355796 GO_REF:0000024 MGI:3487194 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
G MIXL1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:3695524|PMID:17151016) MGI PMID:17151016 MGI:3695524 NCBI chr 7:38,651,481...38,652,560 JBrowse link
G NOG noggin acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:5293253|PMID:21822279) MGI PMID:21822279 MGI:5293253 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
G SOX7 SRY-box transcription factor 7 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chr25:27,216,111...27,222,142
Ensembl chr25:27,215,528...27,220,227
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr 9:3,018,599...3,122,664
Ensembl chr 9:3,020,533...3,171,471
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMSS1 cms1 ribosomal small subunit homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:6,442,721...6,818,394
Ensembl chr33:6,443,035...6,818,171
JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012
JBrowse link
G COL12A1 collagen type XII alpha 1 chain involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:36,720,686...36,838,321
Ensembl chr12:36,646,408...36,838,622
JBrowse link
G COL4A2 collagen type IV alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297
JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr31:39,301,718...39,319,895
Ensembl chr31:39,301,748...39,448,062
JBrowse link
G COL7A1 collagen type VII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr20:40,519,121...40,550,305
Ensembl chr20:40,519,378...40,552,935
JBrowse link
G COL8A1 collagen type VIII alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:6,285,742...6,428,172
Ensembl chr33:6,285,415...6,425,414
JBrowse link
G FN1 fibronectin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:22,456,854...22,522,410
Ensembl chr37:22,420,428...22,523,123
JBrowse link
G GATA6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:1315079|PMID:9832509) MGI PMID:9832509 MGI:1315079 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HSBP1 heat shock factor binding protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5553204|PMID:24380799) Ensembl
MGI
PMID:24380799 GO_REF:0000107 MGI:5553204 NCBI chr 5:68,474,960...68,479,206
Ensembl chr 5:68,475,948...68,479,145
JBrowse link
G INHBA inhibin subunit beta A involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:8,272,978...8,288,432
Ensembl chr18:8,272,872...8,283,794
JBrowse link
G ITGA4 integrin subunit alpha 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:24,670,464...24,686,719
Ensembl chr36:24,653,408...24,729,057
JBrowse link
G ITGA5 integrin subunit alpha 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr27:904,892...924,757
Ensembl chr27:904,102...924,084
JBrowse link
G ITGA7 integrin subunit alpha 7 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr10:91,782...110,839
Ensembl chr10:91,391...110,817
JBrowse link
G ITGAV integrin subunit alpha V involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:28,815,215...28,890,569
Ensembl chr36:28,804,013...28,887,430
JBrowse link
G ITGB2 integrin subunit beta 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr31:38,520,733...38,547,003
Ensembl chr31:38,521,103...38,547,018
JBrowse link
G ITGB5 integrin subunit beta 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:27,797,204...27,912,558
Ensembl chr33:27,797,667...27,912,584
JBrowse link
G LAMA3 laminin subunit alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268
JBrowse link
G LAMB1 laminin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMB3 laminin subunit beta 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474
JBrowse link
G MIXL1 Mix paired-like homeobox involved_in ISO (MGI:5447921|PMID:19038793) BHF-UCL PMID:19038793 MGI:5447921 NCBI chr 7:38,651,481...38,652,560 JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:3,183,419...3,193,079
Ensembl chr 8:3,183,606...3,194,122
JBrowse link
G MMP15 matrix metallopeptidase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,501,783...58,512,507
Ensembl chr 2:58,504,848...58,512,371
JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:60,471,092...60,492,991
Ensembl chr 2:60,471,257...60,494,113
JBrowse link
G MMP8 matrix metallopeptidase 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:29,036,381...29,047,180
Ensembl chr 5:29,035,820...29,046,808
JBrowse link
G MMP9 matrix metallopeptidase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:33,274,260...33,281,116
Ensembl chr24:33,274,268...33,281,293
JBrowse link
G NODAL nodal growth differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
JBrowse link
G VTN vitronectin involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 9:42,617,860...42,620,825
Ensembl chr 9:42,614,941...42,630,864
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3625553|PMID:12194849) Ensembl
MGI
PMID:12194849 GO_REF:0000107 MGI:3625553 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
JBrowse link
G LOC481709 POU domain, class 5, transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:860,702...866,099 JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4442295|PMID:20308546) Ensembl
MGI
PMID:20308546 GO_REF:0000107 MGI:4442295 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4887279|PMID:21245162)
GO_Central
MGI
PMID:21245162 PMID:21873635 MGI:4887279 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807614|PMID:18635606) Ensembl
MGI
PMID:18635606 GO_REF:0000107 MGI:3807614 NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3051920|PMID:15136140) Ensembl
MGI
PMID:15136140 GO_REF:0000107 MGI:3051920 NCBI chr 4:34,499,898...34,582,481
Ensembl chr 4:34,517,492...34,578,923
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr23:16,476,498...16,512,406
Ensembl chr23:16,506,032...16,511,527
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr24:1,010,370...1,013,791
Ensembl chr24:1,010,651...1,013,072
JBrowse link
G LDB1 LIM domain binding 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5697986|PMID:26494787) Ensembl
MGI
PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chr28:14,646,409...14,658,324
Ensembl chr28:14,646,056...14,658,548
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5697986|PMID:26494787) Ensembl
MGI
PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2677178|PMID:14511481)
(MGI:2155575|PMID:11311163)
Ensembl
MGI
PMID:11311163 PMID:14511481 GO_REF:0000107 MGI:2155575 MGI:2677178 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446
JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5697986|PMID:26494787) Ensembl
MGI
PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chr 1:23,875,989...23,930,027
Ensembl chr 1:23,882,139...23,969,405
JBrowse link
G SSBP3 single stranded DNA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5697986|PMID:26494787) Ensembl
MGI
PMID:26494787 GO_REF:0000107 MGI:5697986 NCBI chr 5:54,690,632...54,826,691
Ensembl chr 5:54,662,840...54,824,960
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:42,663,287...42,668,665
Ensembl chr 8:42,664,223...42,668,514
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL5A1 collagen type V alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728
JBrowse link
G COL5A2 collagen type V alpha 2 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr36:30,538,863...30,677,450
Ensembl chr36:30,540,229...30,691,564
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,738,333...52,739,962
Ensembl chr 3:52,738,366...52,739,755
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:35,697,428...35,701,596
Ensembl chr26:35,697,618...35,701,496
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16205
    developmental process 6390
      anatomical structure development 5936
        tissue development 2013
          endoderm development 86
            endoderm formation + 55
            mesendoderm development + 11
paths to the root