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ONTOLOGY REPORT - ANNOTATIONS


Term:endoderm development
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Accession:GO:0007492 term browser browse the term
Definition:The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.


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endoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arc activity regulated cytoskeleton associated protein acts_upstream_of_or_within ISO (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chrNW_004955454:1,379,998...1,383,414
Ensembl chrNW_004955454:1,379,998...1,383,414
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312
JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO (MGI:3840601|PMID:18974875) MGI PMID:18974875 MGI:3840601 NCBI chrNW_004955478:6,990,816...7,088,751
Ensembl chrNW_004955478:6,990,833...7,086,721
JBrowse link
G Dab2 DAB adaptor protein 2 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
ISO (MGI:5319713|PMID:22525672) MGI PMID:22525672 MGI:5319713 NCBI chrNW_004955426:23,852,752...23,883,030 JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3789532|PMID:18403408) MGI PMID:18403408 MGI:3789532 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
ISO (MGI:1888607|PMID:10926768) MGI PMID:10926768 MGI:1888607 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100
JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3763867|PMID:17936261)
(MGI:3611720|PMID:16368929)
MGI PMID:16368929 PMID:17936261 MGI:3611720 MGI:3763867 NCBI chrNW_004955413:6,493,734...6,516,315 JBrowse link
G Hdac1 histone deacetylase 1 acts_upstream_of_or_within ISO (MGI:3041938|PMID:15060137) MGI PMID:15060137 MGI:3041938 NCBI chrNW_004955452:10,636,366...10,668,873
Ensembl chrNW_004955452:10,636,366...10,670,864
JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:3703395|PMID:16364283) MGI PMID:16364283 MGI:3703395 NCBI chrNW_004955425:737,506...742,775
Ensembl chrNW_004955425:735,378...742,775
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:1346632|PMID:10518496), (MGI:3807614|PMID:18635606)
(MGI:1346633|PMID:10518495)
MGI PMID:10518495 PMID:10518496 PMID:18635606 MGI:1346632 MGI:1346633 MGI:3807614 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
G Kif16b kinesin family member 16B involved_in ISO (MGI:4889011|PMID:21238925) UniProt PMID:21238925 MGI:4889011 NCBI chrNW_004955415:25,449,734...25,740,697
Ensembl chrNW_004955415:25,447,539...25,740,775
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501
JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chrNW_004955475:10,687,168...10,710,286
Ensembl chrNW_004955475:10,687,367...10,710,053
JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chrNW_004955489:418,650...422,428 JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702
JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (MGI:1335655|PMID:10208743), (MGI:78065|PMID:8557195) MGI PMID:8557195 PMID:10208743 MGI:1335655 MGI:78065 NCBI chrNW_004955409:24,612,490...24,616,360
Ensembl chrNW_004955409:24,612,635...24,616,430
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628
JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:2682520|PMID:14657333) MGI PMID:14657333 MGI:2682520 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
G Onecut1 one cut homeobox 1 acts_upstream_of_or_within ISO (MGI:1859126|PMID:10825208) MGI PMID:10825208 MGI:1859126 NCBI chrNW_004955409:2,181,364...2,214,636
Ensembl chrNW_004955409:2,181,346...2,207,888
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chrNW_004955466:10,755,143...10,764,957
Ensembl chrNW_004955466:10,755,012...10,765,095
JBrowse link
G Pax9 paired box 9 acts_upstream_of_or_within ISO (MGI:2178212|PMID:11932925) MGI PMID:11932925 MGI:2178212 NCBI chrNW_004955409:24,401,599...24,443,687
Ensembl chrNW_004955409:24,424,343...24,444,040
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chrNW_004955446:14,564,366...14,566,178
Ensembl chrNW_004955446:14,564,366...14,566,178
JBrowse link
G Pthlh parathyroid hormone like hormone acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chrNW_004955505:6,834,533...6,846,909
Ensembl chrNW_004955505:6,834,533...6,847,335
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787)
(MGI:1195384|PMID:9420335)
MGI PMID:9420335 PMID:26494787 MGI:1195384 MGI:5697986 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (MGI:4946462|PMID:21146513)
(MGI:2178090|PMID:11973269)
(MGI:4421275|PMID:19913509)
MGI
UniProt
PMID:11973269 PMID:19913509 PMID:21146513 MGI:2178090 MGI:4421275 MGI:4946462 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Tgfb1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070
JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) MGI PMID:16256739 MGI:3609071 NCBI chrNW_004955418:2,332,636...2,338,099
Ensembl chrNW_004955418:2,332,636...2,338,085
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:1341493|PMID:10421635) MGI PMID:10421635 MGI:1341493 NCBI chrNW_004955485:8,517,412...8,521,732
Ensembl chrNW_004955485:8,517,412...8,521,770
JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3625553|PMID:12194849)
(MGI:5498579|PMID:23824574)
MGI PMID:12194849 PMID:23824574 MGI:3625553 MGI:5498579 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within
ISO (MGI:3772748|PMID:18171685)
(MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279)
UniProt
MGI
PMID:18171685 PMID:21245162 PMID:21822279 MGI:3772748 MGI:4887279 MGI:5293253 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:77407|PMID:8582296) MGI PMID:8582296 MGI:77407 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:3487194|PMID:15355796) MGI PMID:15355796 MGI:3487194 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501
JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:3695524|PMID:17151016) MGI PMID:17151016 MGI:3695524 NCBI chrNW_004955489:418,650...422,428 JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:5293253|PMID:21822279) MGI PMID:21822279 MGI:5293253 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Sox7 SRY-box transcription factor 7 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chrNW_004955403:52,253,816...52,259,884
Ensembl chrNW_004955403:52,253,482...52,259,884
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955435:7,352,617...7,545,235
Ensembl chrNW_004955435:7,352,617...7,545,235
JBrowse link
G Col12a1 collagen type XII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955488:8,128,816...8,240,714
Ensembl chrNW_004955488:8,131,846...8,240,777
JBrowse link
G Col4a2 collagen type IV alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955404:2,092,184...2,178,079
Ensembl chrNW_004955404:2,092,184...2,178,079
JBrowse link
G Col6a1 collagen type VI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955407:42,461,837...42,479,048
Ensembl chrNW_004955407:42,461,952...42,478,261
JBrowse link
G Col7a1 collagen type VII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955532:650,913...681,186 JBrowse link
G Col8a1 collagen type VIII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955427:1,187,550...1,335,794
Ensembl chrNW_004955427:1,187,550...1,335,794
JBrowse link
G Fn1 fibronectin 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955457:629,599...694,948
Ensembl chrNW_004955457:629,518...696,975
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Hsbp1 heat shock factor binding protein 1 acts_upstream_of_or_within ISO (MGI:5553204|PMID:24380799) MGI PMID:24380799 MGI:5553204 NCBI chrNW_004955564:396,985...400,975
Ensembl chrNW_004955564:396,133...401,251
JBrowse link
G Inhba inhibin subunit beta A involved_in ISO (PMID:21828274) BHF-UCL PMID:21828274 NCBI chrNW_004955460:2,054,879...2,066,628
Ensembl chrNW_004955460:2,046,588...2,066,609
JBrowse link
G Itga4 integrin subunit alpha 4 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955403:15,726,296...15,807,055
Ensembl chrNW_004955403:15,723,785...15,807,111
JBrowse link
G Itga5 integrin subunit alpha 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955458:1,635,554...1,657,609
Ensembl chrNW_004955458:1,632,282...1,658,295
JBrowse link
G Itga7 integrin subunit alpha 7 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955458:3,322,735...3,343,275
Ensembl chrNW_004955458:3,321,259...3,343,275
JBrowse link
G Itgav integrin subunit alpha V involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955403:11,588,536...11,669,809
Ensembl chrNW_004955403:11,592,339...11,659,297
JBrowse link
G Itgb2 integrin subunit beta 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955407:41,779,849...41,805,637
Ensembl chrNW_004955407:41,777,777...41,800,201
JBrowse link
G Itgb5 integrin subunit beta 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955427:23,851,475...23,952,211
Ensembl chrNW_004955427:23,850,261...23,939,950
JBrowse link
G Lama3 laminin subunit alpha 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955402:11,980,980...12,362,143 JBrowse link
G Lamb1 laminin subunit beta 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433
JBrowse link
G Lamb3 laminin subunit beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955489:2,547,611...2,603,079
Ensembl chrNW_004955489:2,568,650...2,607,595
JBrowse link
G Mixl1 Mix paired-like homeobox involved_in ISO (MGI:5447921|PMID:19038793) BHF-UCL PMID:19038793 MGI:5447921 NCBI chrNW_004955489:418,650...422,428 JBrowse link
G Mmp14 matrix metallopeptidase 14 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955409:37,438,924...37,448,704
Ensembl chrNW_004955409:37,440,541...37,448,437
JBrowse link
G Mmp15 matrix metallopeptidase 15 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955433:15,584,206...15,603,162
Ensembl chrNW_004955433:15,584,780...15,601,739
JBrowse link
G Mmp2 matrix metallopeptidase 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955433:13,024,844...13,050,041
Ensembl chrNW_004955433:13,024,418...13,052,775
JBrowse link
G Mmp8 matrix metallopeptidase 8 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955412:5,928,997...5,939,012
Ensembl chrNW_004955412:5,928,997...5,939,012
JBrowse link
G Mmp9 matrix metallopeptidase 9 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955445:11,295,500...11,303,322
Ensembl chrNW_004955445:11,295,448...11,303,288
JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO (PMID:21741376) BHF-UCL PMID:21741376 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (MGI:5908786|PMID:25242323) UniProt PMID:25242323 MGI:5908786 NCBI chrNW_004955420:25,070,626...25,178,410
Ensembl chrNW_004955420:25,090,798...25,177,760
JBrowse link
G Vtn vitronectin involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955481:4,765,078...4,768,027 JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004955406:30,533,919...30,665,812
Ensembl chrNW_004955406:30,533,060...30,665,812
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3625553|PMID:12194849) MGI PMID:12194849 MGI:3625553 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004955414:26,347,508...26,373,726
Ensembl chrNW_004955414:26,347,508...26,373,785
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004955409:2,711,475...2,727,879
Ensembl chrNW_004955409:2,711,564...2,727,755
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004955468:166,477...172,200 JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chrNW_004955416:8,237,439...8,293,802
Ensembl chrNW_004955416:8,237,439...8,293,802
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin acts_upstream_of_or_within ISO (MGI:4887279|PMID:21245162) MGI PMID:21245162 MGI:4887279 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
G Nanog Nanog homeobox involved_in ISO (PMID:20713518) MGI PMID:20713518 NCBI chrNW_004955413:6,561,323...6,565,770 JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:20713518) MGI PMID:20713518 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:21245162) MGI PMID:21245162 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934
JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312
JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955430:19,280,460...19,287,060
Ensembl chrNW_004955430:19,281,602...19,286,867
JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955415:29,982,940...29,987,093
Ensembl chrNW_004955415:29,982,940...29,986,255
JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955485:8,229,517...8,242,003
Ensembl chrNW_004955485:8,229,517...8,241,142
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501
JBrowse link
G Nodal nodal growth differentiation factor involved_in
acts_upstream_of_or_within
ISO (PMID:21741376)
(MGI:2677178|PMID:14511481)
(MGI:2155575|PMID:11311163)
BHF-UCL
MGI
PMID:11311163 PMID:14511481 PMID:21741376 MGI:2155575 MGI:2677178 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955466:10,755,143...10,764,957
Ensembl chrNW_004955466:10,755,012...10,765,095
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955402:35,956,080...36,001,746
Ensembl chrNW_004955402:35,961,165...35,994,538
JBrowse link
G Ssbp3 single stranded DNA binding protein 3 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chrNW_004955464:4,901,150...5,049,341
Ensembl chrNW_004955464:4,901,151...5,047,656
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO (MGI:5784967|PMID:24733888) UniProt PMID:24733888 MGI:5784967 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955513:3,533,612...3,660,605
Ensembl chrNW_004955513:3,533,614...3,658,161
JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chrNW_004955403:9,562,401...9,703,828
Ensembl chrNW_004955403:9,562,401...9,703,828
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102008188 core histone macro-H2A.1 involved_in ISO (PMID:23595991) UniProt PMID:23595991 NCBI chrNW_004955408:30,497,531...30,550,095
Ensembl chrNW_004955408:30,497,531...30,550,118
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chrNW_004955425:7,353,964...7,357,599 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11952
    developmental process 5657
      anatomical structure development 5288
        tissue development 1840
          endoderm development 79
            endoderm formation + 50
            mesendoderm development + 11
paths to the root