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ONTOLOGY REPORT - ANNOTATIONS


Term:endoderm development
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Accession:GO:0007492 term browser browse the term
Definition:The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.


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endoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARC activity regulated cytoskeleton associated protein acts_upstream_of_or_within ISO (MGI:1355000|PMID:10727859) MGI PMID:10727859 MGI:1355000 NCBI chr 8:139,320,366...139,323,802
Ensembl chr 8:142,367,995...142,369,185
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
JBrowse link
G BPTF bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO (MGI:3840601|PMID:18974875) MGI PMID:18974875 MGI:3840601 NCBI chr17:61,759,241...61,917,343
Ensembl chr17:66,956,594...67,109,428
JBrowse link
G CFC1B cripto, FRL-1, cryptic family 1B acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chr2B:29,354,004...29,362,161 JBrowse link
G DAB2 DAB adaptor protein 2 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
ISO (MGI:5319713|PMID:22525672) MGI PMID:22525672 MGI:5319713 NCBI chr 5:70,951,198...71,004,836
Ensembl chr 5:76,022,143...76,041,443
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:3789532|PMID:18403408) MGI PMID:18403408 MGI:3789532 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209
JBrowse link
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect
ISO (MGI:1888607|PMID:10926768) MGI PMID:10926768 MGI:1888607 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851
JBrowse link
G GDF3 growth differentiation factor 3 acts_upstream_of_or_within ISO (MGI:3763867|PMID:17936261)
(MGI:3611720|PMID:16368929)
MGI PMID:16368929 PMID:17936261 MGI:3611720 MGI:3763867 NCBI chr12:7,813,288...7,819,418
Ensembl chr12:7,972,907...7,979,815
JBrowse link
G HDAC1 histone deacetylase 1 acts_upstream_of_or_within ISO (MGI:3041938|PMID:15060137) MGI PMID:15060137 MGI:3041938 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HHEX hematopoietically expressed homeobox acts_upstream_of_or_within ISO (MGI:3703395|PMID:16364283) MGI PMID:16364283 MGI:3703395 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992
JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:1346632|PMID:10518496), (MGI:3807614|PMID:18635606)
(MGI:1346633|PMID:10518495)
MGI PMID:10518495 PMID:10518496 PMID:18635606 MGI:1346632 MGI:1346633 MGI:3807614 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
JBrowse link
G KIF16B kinesin family member 16B involved_in ISO (MGI:4889011|PMID:21238925) UniProt PMID:21238925 MGI:4889011 NCBI chr20:16,229,429...16,532,735
Ensembl chr20:16,210,821...16,512,618
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (MGI:4839544|PMID:20589884) MGI PMID:20589884 MGI:4839544 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942
JBrowse link
G MIXL1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chr 1:201,682,488...201,686,358 JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr2B:70,193,950...70,308,442
Ensembl chr2B:188,003,235...188,116,710
JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
G NOG noggin acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092
JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:2682520|PMID:14657333) MGI PMID:14657333 MGI:2682520 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
G ONECUT1 one cut homeobox 1 acts_upstream_of_or_within ISO (MGI:1859126|PMID:10825208) MGI PMID:10825208 MGI:1859126 NCBI chr15:31,694,830...31,727,644
Ensembl chr15:50,016,010...50,053,062
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:2136711|PMID:11412024) MGI PMID:11412024 MGI:2136711 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
G PAX9 paired box 9 acts_upstream_of_or_within ISO (MGI:2178212|PMID:11932925) MGI PMID:11932925 MGI:2178212 NCBI chr14:17,114,975...17,431,786
Ensembl chr14:35,771,454...35,791,697
JBrowse link
G PELO pelota mRNA surveillance and ribosome rescue factor acts_upstream_of_or_within ISO (MGI:5705244|PMID:24835669) MGI PMID:24835669 MGI:5705244 NCBI chr 5:61,229,841...61,247,565
Ensembl chr 5:62,851,099...62,865,786
JBrowse link
G PTHLH parathyroid hormone like hormone acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chr12:58,341,361...58,355,804
Ensembl chr12:60,960,071...60,973,750
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530
JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787)
(MGI:1195384|PMID:9420335)
MGI PMID:9420335 PMID:26494787 MGI:1195384 MGI:5697986 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359
JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (MGI:4421275|PMID:19913509)
(MGI:2178090|PMID:11973269)
(MGI:4946462|PMID:21146513)
MGI
UniProt
PMID:11973269 PMID:19913509 PMID:21146513 MGI:2178090 MGI:4421275 MGI:4946462 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
JBrowse link
G TGFB1 transforming growth factor beta 1 acts_upstream_of_or_within ISO (MGI:1326851|PMID:9921650) MGI PMID:9921650 MGI:1326851 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973
JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr17:72,035,737...72,185,489
Ensembl chr17:77,633,564...77,738,511
JBrowse link
G WNT8A Wnt family member 8A acts_upstream_of_or_within ISO (MGI:3609071|PMID:16256739) MGI PMID:16256739 MGI:3609071 NCBI chr 5:133,419,324...133,471,094
Ensembl chr 5:139,598,229...139,605,926
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (MGI:1341493|PMID:10421635) MGI PMID:10421635 MGI:1341493 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916
JBrowse link
endoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3625553|PMID:12194849)
(MGI:5498579|PMID:23824574)
MGI PMID:12194849 PMID:23824574 MGI:3625553 MGI:5498579 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within
involved_in
ISO (MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279)
(MGI:3772748|PMID:18171685)
MGI
UniProt
PMID:18171685 PMID:21245162 PMID:21822279 MGI:3772748 MGI:4887279 MGI:5293253 NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:77407|PMID:8582296) MGI PMID:8582296 MGI:77407 NCBI chr 8:7,442,921...7,526,731 JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:3487194|PMID:15355796) MGI PMID:15355796 MGI:3487194 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G MIXL1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:3695524|PMID:17151016) MGI PMID:17151016 MGI:3695524 NCBI chr 1:201,682,488...201,686,358 JBrowse link
G NOG noggin acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) MGI PMID:18462699 MGI:4415813 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:5293253|PMID:21822279) MGI PMID:21822279 MGI:5293253 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
JBrowse link
G SOX7 SRY-box transcription factor 7 involved_in ISO (PMID:18682240) UniProt PMID:18682240 NCBI chr 8:8,476,357...8,483,144 JBrowse link
G TNRC6C trinucleotide repeat containing adaptor 6C acts_upstream_of_or_within ISO (MGI:5315650|PMID:22187428) MGI PMID:22187428 MGI:5315650 NCBI chr17:72,035,737...72,185,489
Ensembl chr17:77,633,564...77,738,511
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 1:105,538,215...105,769,973
Ensembl chr 1:104,249,891...104,481,259
JBrowse link
G COL12A1 collagen type XII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 6:72,927,897...73,049,168
Ensembl chr 6:76,219,319...76,340,496
JBrowse link
G COL4A2 collagen type IV alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr13:91,440,314...91,650,138
Ensembl chr13:110,563,119...110,767,530
JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr21:32,322,185...32,346,850
Ensembl chr21:45,584,096...45,607,240
JBrowse link
G COL7A1 collagen type VII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 3:48,485,922...48,518,036
Ensembl chr 3:49,568,163...49,598,919
JBrowse link
G COL8A1 collagen type VIII alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 3:96,732,445...96,892,726
Ensembl chr 3:103,521,159...103,573,617
JBrowse link
G FN1 fibronectin 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr2B:102,623,568...102,698,747
Ensembl chr2B:221,208,431...221,284,003
JBrowse link
G GATA6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:1315079|PMID:9832509) MGI PMID:9832509 MGI:1315079 NCBI chr18:15,411,764...15,444,402 JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in ISO (PMID:17624332) UniProt PMID:17624332 NCBI chr12:22,954,946...23,096,623 JBrowse link
G HSBP1 heat shock factor binding protein 1 acts_upstream_of_or_within ISO (MGI:5553204|PMID:24380799) MGI PMID:24380799 MGI:5553204 NCBI chr16:64,429,442...64,434,467 JBrowse link
G INHBA inhibin subunit beta A involved_in ISO (PMID:21828274) BHF-UCL PMID:21828274 NCBI chr 7:42,538,591...42,556,578
Ensembl chr 7:42,580,730...42,595,097
JBrowse link
G ITGA4 integrin subunit alpha 4 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr2B:68,719,376...68,802,488
Ensembl chr2B:186,530,187...186,612,203
JBrowse link
G ITGA5 integrin subunit alpha 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr12:34,326,182...34,350,050
Ensembl chr12:35,052,994...35,075,835
JBrowse link
G ITGA7 integrin subunit alpha 7 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr12:33,195,602...33,226,796
Ensembl chr12:33,923,549...33,950,886
JBrowse link
G ITGAV integrin subunit alpha V involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr2B:73,880,962...73,972,486
Ensembl chr2B:191,680,655...191,773,028
JBrowse link
G ITGB2 integrin subunit beta 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr21:31,181,228...31,216,033
Ensembl chr21:44,470,999...44,505,963
JBrowse link
G ITGB5 integrin subunit beta 5 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 3:121,863,676...122,013,438
Ensembl chr 3:128,762,200...128,877,172
JBrowse link
G LAMA3 laminin subunit alpha 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr18:16,941,316...17,208,363
Ensembl chr18:20,565,649...20,831,957
JBrowse link
G LAMB1 laminin subunit beta 1 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 7:99,905,761...99,985,233
Ensembl chr 7:112,627,488...112,706,554
JBrowse link
G LAMB3 laminin subunit beta 3 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 1:185,191,401...185,245,154
Ensembl chr 1:189,996,639...190,034,206
JBrowse link
G MIXL1 Mix paired-like homeobox involved_in ISO (MGI:5447921|PMID:19038793) BHF-UCL PMID:19038793 MGI:5447921 NCBI chr 1:201,682,488...201,686,358 JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr14:3,654,125...3,665,158
Ensembl chr14:21,753,305...21,764,058
JBrowse link
G MMP15 matrix metallopeptidase 15 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr16:38,304,856...38,326,193
Ensembl chr16:57,433,813...57,457,122
JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr16:35,711,866...35,738,881
Ensembl chr16:54,812,694...54,844,279
JBrowse link
G MMP8 matrix metallopeptidase 8 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr11:97,650,408...97,663,731
Ensembl chr11:101,143,268...101,156,736
JBrowse link
G MMP9 matrix metallopeptidase 9 involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr20:42,346,305...42,354,018
Ensembl chr20:43,432,389...43,440,129
JBrowse link
G NODAL nodal growth differentiation factor involved_in ISO (PMID:21741376) BHF-UCL PMID:21741376 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (MGI:5908786|PMID:25242323) UniProt PMID:25242323 MGI:5908786 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999
JBrowse link
G VTN vitronectin involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr17:28,403,813...28,407,202
Ensembl chr17:28,906,508...28,909,583
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC73 cell division cycle 73 involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr 1:168,581,730...168,710,915
Ensembl chr 1:172,875,365...173,004,934
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3625553|PMID:12194849) MGI PMID:12194849 MGI:3625553 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr11:10,884,353...10,913,246
Ensembl chr11:10,610,892...10,639,808
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr19:36,484,099...36,489,364
Ensembl chr19:45,031,819...45,037,169
JBrowse link
G POU5F1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) MGI PMID:10742100 MGI:1355046 NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO (MGI:3849235|PMID:19345177) UniProt PMID:19345177 MGI:3849235 NCBI chr15:20,355,927...20,424,153
Ensembl chr15:38,599,163...38,662,100
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chr18:15,411,764...15,444,402 JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (MGI:4442295|PMID:20308546) MGI PMID:20308546 MGI:4442295 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin acts_upstream_of_or_within ISO (MGI:4887279|PMID:21245162) MGI PMID:21245162 MGI:4887279 NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274
JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
JBrowse link
mesendoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (MGI:3051920|PMID:15136140) MGI PMID:15136140 MGI:3051920 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912
JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274
JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr20:22,519,942...22,524,262 JBrowse link
G LDB1 LIM domain binding 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr10:98,707,470...98,722,771
Ensembl chr10:102,179,757...102,184,047
JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
ISO (PMID:21741376)
(MGI:2155575|PMID:11311163)
(MGI:2677178|PMID:14511481)
BHF-UCL
MGI
PMID:11311163 PMID:14511481 PMID:21741376 MGI:2155575 MGI:2677178 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012
JBrowse link
G SMAD4 SMAD family member 4 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359
JBrowse link
G SSBP3 single stranded DNA binding protein 3 acts_upstream_of_or_within ISO (MGI:5697986|PMID:26494787) MGI PMID:26494787 MGI:5697986 NCBI chr 1:53,501,656...53,680,682
Ensembl chr 1:55,094,820...55,272,207
JBrowse link
G ZFP36L1 ZFP36 ring finger protein like 1 involved_in ISO (MGI:5784967|PMID:24733888) UniProt PMID:24733888 MGI:5784967 NCBI chr14:49,372,058...49,379,116
Ensembl chr14:68,247,347...68,255,805
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL5A1 collagen type V alpha 1 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr 9:105,746,388...105,956,280
Ensembl chr 9:134,342,955...134,544,651
JBrowse link
G COL5A2 collagen type V alpha 2 chain involved_in ISO (PMID:23154389) UniProt PMID:23154389 NCBI chr2B:76,339,756...76,487,133
Ensembl chr2B:194,259,316...194,407,237
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:4441249|PMID:18593560) BHF-UCL PMID:18593560 MGI:4441249 NCBI chr15:68,440,626...68,441,935
Ensembl chr15:87,645,768...87,647,210
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100974858 core histone macro-H2A.1 involved_in ISO (PMID:23595991) UniProt PMID:23595991 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) BHF-UCL PMID:20559569 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12543
    developmental process 5867
      anatomical structure development 5473
        tissue development 1883
          endoderm development 78
            endoderm formation + 49
            mesendoderm development + 11
paths to the root