ONTOLOGY REPORT - ANNOTATIONS
Term: endoderm development
Accession: GO:0007492
browse the term
Definition: The process whose specific outcome is the progression of the endoderm over time, from its formation to the mature structure. The endoderm is the innermost germ layer that develops into the gastrointestinal tract, the lungs and associated tissues.
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Arc
activity-regulated cytoskeleton-associated protein
acts_upstream_of_or_within
ISO
MGI:2386454 (MGI:1355000|PMID:10727859)
RGD
PMID:10727859
MGI:1355000
NCBI chr 7:106,555,968...106,559,697
Ensembl chr 7:106,555,785...106,559,378
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Bmp4
bone morphogenetic protein 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:5705244|PMID:24835669)
Ensembl RGD
PMID:24835669
GO_REF:0000107 MGI:5705244
NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
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Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:2158342 (MGI:3051920|PMID:15136140)
RGD
PMID:15136140
MGI:3051920
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
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Bptf
bromodomain PHD finger transcription factor
acts_upstream_of_or_within
ISO
MGI:3841299 (MGI:3840601|PMID:18974875)
RGD
PMID:18974875
MGI:3840601
NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769
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Cfc1
cripto, FRL-1, cryptic family 1
acts_upstream_of_or_within
ISO
MGI:97451 (MGI:2136711|PMID:11412024)
RGD
PMID:11412024
MGI:2136711
NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930
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Dab2
DAB adaptor protein 2
NOT|acts_upstream_of_or_within
ISO
(MGI:5319713|PMID:22525672)
RGD
PMID:22525672
MGI:5319713
NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476
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Dkk1
dickkopf WNT signaling pathway inhibitor 1
acts_upstream_of_or_within
ISO
MGI:2387760 (MGI:3789532|PMID:18403408)
RGD
PMID:18403408
MGI:3789532
NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
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Eomes
eomesodermin
acts_upstream_of_or_within
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
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Epb41l5
erythrocyte membrane protein band 4.1 like 5
acts_upstream_of_or_within
ISO
MGI:3822451 (MGI:3821807|PMID:18794329)
RGD
PMID:18794329
MGI:3821807
NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
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Ext1
exostosin glycosyltransferase 1
acts_upstream_of_or_within acts_upstream_of_or_within_positive_effect
ISO
MGI:1888710 (MGI:1888607|PMID:10926768)
RGD
PMID:10926768
MGI:1888607
NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
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Gdf1
growth differentiation factor 1
acts_upstream_of_or_within
ISO
MGI:95686 (MGI:3763867|PMID:17936261)
RGD
PMID:17936261
MGI:3763867
NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,097,314...19,112,519
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Gdf3
growth differentiation factor 3
acts_upstream_of_or_within
ISO
MGI:3612535|MGI:95683 (MGI:3611720|PMID:16368929), (MGI:3763867|PMID:17936261)
RGD
PMID:16368929 PMID:17936261
MGI:3611720 MGI:3763867
NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
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Hdac1
histone deacetylase 1
acts_upstream_of_or_within
ISO
(MGI:3041938|PMID:15060137)
RGD
PMID:15060137
MGI:3041938
NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
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Hhex
hematopoietically expressed homeobox
acts_upstream_of_or_within
ISO
MGI:2177762 (MGI:3703395|PMID:16364283)
RGD
PMID:16364283
MGI:3703395
NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042
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Hnf1b
HNF1 homeobox B
acts_upstream_of_or_within
ISO
MGI:1857856|MGI:2181390 (MGI:1346632|PMID:10518496), (MGI:1346633|PMID:10518495), (MGI:3807614|PMID:18635606)
RGD
PMID:10518495 PMID:10518496 PMID:18635606
MGI:1346632 MGI:1346633 MGI:3807614
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
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Kif16b
kinesin family member 16B
involved_in
ISO
(MGI:4889011|PMID:21238925)
RGD
PMID:21238925
MGI:4889011
NCBI chr 3:129,974,692...130,254,194
Ensembl chr 3:129,974,800...130,254,019
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Lhx1
LIM homeobox 1
acts_upstream_of_or_within
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
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Med12
mediator complex subunit 12
acts_upstream_of_or_within
ISO
MGI:4839486 (MGI:4839544|PMID:20589884)
RGD
PMID:20589884
MGI:4839544
NCBI chr X:66,404,622...66,427,772
Ensembl chr X:66,404,760...66,428,387
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Mixl1
Mix paired-like homeobox 1
acts_upstream_of_or_within
ISO
MGI:2387828 (MGI:2181739|PMID:12117810)
RGD
PMID:12117810
MGI:2181739
NCBI chr13:92,422,031...92,426,065
Ensembl chr13:92,422,031...92,426,065
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Nckap1
NCK-associated protein 1
acts_upstream_of_or_within
ISO
MGI:3578145 (MGI:3701029|PMID:16831833)
RGD
PMID:16831833
MGI:3701029
NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217
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Nkx2-1
NK2 homeobox 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857494 (MGI:1335655|PMID:10208743), (MGI:78065|PMID:8557195)
Ensembl RGD
PMID:8557195 PMID:10208743
GO_REF:0000107 MGI:1335655 MGI:78065
NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
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Nodal
nodal growth differentiation factor
acts_upstream_of_or_within
ISO
MGI:2158732 (MGI:2155575|PMID:11311163)
RGD
PMID:11311163
MGI:2155575
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
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Nog
noggin
acts_upstream_of_or_within
ISO
(MGI:5705244|PMID:24835669)
RGD
PMID:24835669
MGI:5705244
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Notch1
notch receptor 1
acts_upstream_of_or_within
ISO
MGI:2684314 (MGI:2682520|PMID:14657333)
RGD
PMID:14657333
MGI:2682520
NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
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Onecut1
one cut homeobox 1
acts_upstream_of_or_within
ISO
MGI:2179340 (MGI:1859126|PMID:10825208)
RGD
PMID:10825208
MGI:1859126
NCBI chr 8:75,599,432...75,633,598
Ensembl chr 8:75,599,740...75,627,277
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Otx2
orthodenticle homeobox 2
acts_upstream_of_or_within
ISO
MGI:109448 (MGI:2136711|PMID:11412024)
RGD
PMID:11412024
MGI:2136711
NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
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Pax9
paired box 9
acts_upstream_of_or_within
ISO
MGI:1857887 (MGI:2178212|PMID:11932925)
RGD
PMID:11932925
MGI:2178212
NCBI chr 6:74,186,749...74,203,508
Ensembl chr 6:74,182,568...74,203,506
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Pelo
pelota mRNA surveillance and ribosome rescue factor
acts_upstream_of_or_within
ISO
MGI:3764519|MGI:5705245 (MGI:5705244|PMID:24835669)
RGD
PMID:24835669
MGI:5705244
NCBI chr 2:46,797,853...46,799,621
Ensembl chr 2:46,797,853...46,799,746
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Pthlh
parathyroid hormone-like hormone
acts_upstream_of_or_within
ISO
(MGI:1326851|PMID:9921650)
RGD
PMID:9921650
MGI:1326851
NCBI chr 4:180,188,792...180,199,847
Ensembl chr 4:180,188,792...180,199,847
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Smad2
SMAD family member 2
acts_upstream_of_or_within
ISO
MGI:1201674 (MGI:3618021|PMID:15183723)
RGD
PMID:15183723
MGI:3618021
NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
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Smad3
SMAD family member 3
acts_upstream_of_or_within
ISO
MGI:108051 (MGI:3618021|PMID:15183723)
RGD
PMID:15183723
MGI:3618021
NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
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Smad4
SMAD family member 4
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1858049|MGI:2656539|MGI:5698524 (MGI:1195384|PMID:9420335), (MGI:5697986|PMID:26494787) GO_REF:0000107 MGI:1858049 (MGI:1195384|PMID:9420335)
RGD Ensembl
PMID:9420335 PMID:26494787
GO_REF:0000107 MGI:1195384 MGI:5697986
NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
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Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within involved_in
ISO
MGI:2179440|MGI:3717121 (MGI:4421275|PMID:19913509), (MGI:4946462|PMID:21146513) (MGI:2178090|PMID:11973269)
RGD
PMID:11973269 PMID:19913509 PMID:21146513
MGI:2178090 MGI:4421275 MGI:4946462
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Tgfb1
transforming growth factor, beta 1
acts_upstream_of_or_within
ISO
(MGI:1326851|PMID:9921650)
RGD
PMID:9921650
MGI:1326851
NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
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Tnrc6a
trinucleotide repeat containing adaptor 6A
acts_upstream_of_or_within
ISO
MGI:4052360 (MGI:6094918|PMID:28811219)
RGD
PMID:28811219
MGI:6094918
NCBI chr 1:177,561,898...177,715,669
Ensembl chr 1:177,646,030...177,715,660
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Tnrc6c
trinucleotide repeat containing adaptor 6C
acts_upstream_of_or_within
ISO
MGI:4124681 (MGI:5315650|PMID:22187428)
RGD
PMID:22187428
MGI:5315650
NCBI chr10:102,908,958...102,979,543
Ensembl chr10:102,868,828...102,978,194
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Wnt8a
Wnt family member 8A
acts_upstream_of_or_within
ISO
(MGI:3609071|PMID:16256739)
RGD
PMID:16256739
MGI:3609071
NCBI chr18:26,137,690...26,143,283
Ensembl chr18:26,137,690...26,143,283
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Fgf8
fibroblast growth factor 8
acts_upstream_of_or_within
ISO
MGI:2150346 (MGI:1341493|PMID:10421635)
RGD
PMID:10421635
MGI:1341493
NCBI chr 1:244,584,477...244,590,359
Ensembl chr 1:244,584,652...244,590,359
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Ctnnb1
catenin beta 1
acts_upstream_of_or_within
ISO
MGI:1858007|MGI:2148567|MGI:4418897 (MGI:3625553|PMID:12194849), (MGI:5498579|PMID:23824574)
RGD
PMID:12194849 PMID:23824574
MGI:3625553 MGI:5498579
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Dkk1
dickkopf WNT signaling pathway inhibitor 1
acts_upstream_of_or_within
ISO
(MGI:4415813|PMID:18462699)
RGD
PMID:18462699
MGI:4415813
NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
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Dusp1
dual specificity phosphatase 1
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr10:16,680,489...16,683,276
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Dusp2
dual specificity phosphatase 2
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 3:114,556,325...114,558,510
Ensembl chr 3:114,556,325...114,558,499
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Dusp4
dual specificity phosphatase 4
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr16:57,376,659...57,398,161
Ensembl chr16:57,377,229...57,398,138
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Dusp5
dual specificity phosphatase 5
involved_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:252,538,408...252,555,320
Ensembl chr 1:252,538,449...252,551,818
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Eomes
eomesodermin
acts_upstream_of_or_within involved_in
ISO
MGI:3774028 (MGI:4887279|PMID:21245162), (MGI:5293253|PMID:21822279) (MGI:3772748|PMID:18171685)
RGD
PMID:18171685 PMID:21245162 PMID:21822279
MGI:3772748 MGI:4887279 MGI:5293253
NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
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Gata4
GATA binding protein 4
acts_upstream_of_or_within
ISO
MGI:2179511 (MGI:77407|PMID:8582296)
RGD
PMID:8582296
MGI:77407
NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636
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Lhx1
LIM homeobox 1
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 MGI:1857848 (MGI:3487194|PMID:15355796)
UniProt RGD
PMID:15355796
GO_REF:0000024 MGI:3487194
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
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Mixl1
Mix paired-like homeobox 1
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:2387829 (MGI:3695524|PMID:17151016)
RGD
PMID:17151016 PMID:21873635
MGI:3695524 , RGD:13792537
NCBI chr13:92,422,031...92,426,065
Ensembl chr13:92,422,031...92,426,065
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Nog
noggin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:4415813|PMID:18462699)
Ensembl RGD
PMID:18462699
GO_REF:0000107 MGI:4415813
NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
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Smad2
SMAD family member 2
acts_upstream_of_or_within
ISO
(MGI:5293253|PMID:21822279)
RGD
PMID:21822279
MGI:5293253
NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
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Sox17
SRY-box transcription factor 17
involved_in
ISO
(PMID:18682240)
RGD
PMID:18682240
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Sox7
SRY-box transcription factor 7
involved_in
ISO
(PMID:18682240)
RGD
PMID:18682240
NCBI chr15:38,180,503...38,187,264
Ensembl chr15:38,180,503...38,187,264
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Tnrc6c
trinucleotide repeat containing adaptor 6C
acts_upstream_of_or_within
ISO
MGI:4124681 (MGI:5315650|PMID:22187428)
RGD
PMID:22187428
MGI:5315650
NCBI chr10:102,908,958...102,979,543
Ensembl chr10:102,868,828...102,978,194
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Col11a1
collagen type XI alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
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Col12a1
collagen type XII alpha 1 chain
involved_in
ISO IBA
(PMID:23154389) PMID:21873635
RGD
PMID:23154389 PMID:21873635
RGD:13792537
NCBI chr 8:80,547,592...80,665,665
Ensembl chr 8:80,547,593...80,665,686
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Col4a2
collagen type IV alpha 2 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr16:78,047,591...78,183,360
Ensembl chr16:78,047,602...78,183,839
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Col6a1
collagen type VI alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
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Col7a1
collagen type VII alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 8:109,604,877...109,637,252
Ensembl chr 8:109,604,861...109,637,252
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Col8a1
collagen type VIII alpha 1 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr11:42,776,851...42,906,432
Ensembl chr11:42,777,628...42,906,424
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Fn1
fibronectin 1
involved_in
ISO IEA
(PMID:23154389) GO_REF:0000107
RGD Ensembl
PMID:23154389
GO_REF:0000107
NCBI chr 9:73,196,044...73,264,695
Ensembl chr 9:73,196,044...73,264,678
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Gata6
GATA binding protein 6
acts_upstream_of_or_within
ISO
MGI:2177785 (MGI:1315079|PMID:9832509)
RGD
PMID:9832509
MGI:1315079
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Grb2
growth factor receptor bound protein 2
acts_upstream_of_or_within
ISO
(MGI:3689690|PMID:16908534)
RGD
PMID:16908534
MGI:3689690
NCBI chr10:100,881,404...100,949,193
Ensembl chr10:100,869,718...100,949,309
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Hmga2
high mobility group AT-hook 2
involved_in
ISO ISS
(PMID:17624332) GO_REF:0000024
RGD UniProt
PMID:17624332
GO_REF:0000024
NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
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Hsbp1
heat shock factor binding protein 1
acts_upstream_of_or_within
ISO
(MGI:5553204|PMID:24380799)
RGD
PMID:24380799
MGI:5553204
NCBI chr19:47,401,039...47,405,373
Ensembl chr19:47,400,966...47,435,821
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Inhba
inhibin subunit beta A
involved_in
ISO
(PMID:21828274)
RGD
PMID:21828274
NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
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Itga4
integrin subunit alpha 4
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 3:64,162,764...64,235,010
Ensembl chr 3:64,163,085...64,233,715
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Itga5
integrin subunit alpha 5
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 7:134,478,963...134,502,837
Ensembl chr 7:134,478,968...134,502,837
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Itga7
integrin subunit alpha 7
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 7:1,360,125...1,388,886
Ensembl chr 7:1,359,940...1,388,450
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Itgav
integrin subunit alpha V
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 3:68,838,524...68,926,653
Ensembl chr 3:68,838,189...68,926,639
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Itgb2
integrin subunit beta 2
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr20:11,061,394...11,097,656
Ensembl chr20:11,061,430...11,097,600
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Itgb5
integrin subunit beta 5
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr11:66,828,428...66,944,231
Ensembl chr11:66,829,285...66,944,472
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Lama3
laminin subunit alpha 3
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr18:3,523,168...3,751,722
Ensembl chr18:3,523,133...3,751,353
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Lamb1
laminin subunit beta 1
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 6:47,835,492...47,902,585
Ensembl chr 6:47,835,525...47,902,585
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Lamb3
laminin subunit beta 3
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr13:104,833,810...104,875,405
Ensembl chr13:104,833,873...104,875,405
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Map2k1
mitogen activated protein kinase kinase 1
acts_upstream_of involved_in
ISO IEA
(MGI:3689690|PMID:16908534) GO_REF:0000107
RGD Ensembl
PMID:16908534
GO_REF:0000107 MGI:3689690
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
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Mixl1
Mix paired-like homeobox 1
involved_in
ISO
(MGI:5447921|PMID:19038793)
RGD
PMID:19038793
MGI:5447921
NCBI chr13:92,422,031...92,426,065
Ensembl chr13:92,422,031...92,426,065
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Mmp14
matrix metallopeptidase 14
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr15:27,887,795...27,897,020
Ensembl chr15:27,887,727...27,899,864
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Mmp15
matrix metallopeptidase 15
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr19:9,663,449...9,684,943
Ensembl chr19:9,663,449...9,684,943
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Mmp2
matrix metallopeptidase 2
involved_in
ISO IEA
(PMID:23154389) GO_REF:0000107
RGD Ensembl
PMID:23154389
GO_REF:0000107
NCBI chr19:14,154,657...14,182,870
Ensembl chr19:14,154,657...14,182,870
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Mmp8
matrix metallopeptidase 8
involved_in
IEA ISO
GO_REF:0000107 (PMID:23154389)
Ensembl RGD
PMID:23154389
GO_REF:0000107
NCBI chr 8:4,724,009...4,732,956
Ensembl chr 8:4,724,029...4,733,520
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Mmp9
matrix metallopeptidase 9
involved_in
IEA ISO
GO_REF:0000107 (PMID:23154389)
Ensembl RGD
PMID:23154389
GO_REF:0000107
NCBI chr 3:153,684,158...153,692,118
Ensembl chr 3:153,683,858...153,692,120
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Nodal
nodal growth differentiation factor
involved_in
ISO
(PMID:21741376)
RGD
PMID:21741376
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
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Nr0b1
nuclear receptor subfamily 0, group B, member 1
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3640222|PMID:16466956) GO_REF:0000107
RGD Ensembl
PMID:16466956
GO_REF:0000107 MGI:3640222
NCBI chr X:50,756,886...50,761,014
Ensembl chr X:50,756,886...50,761,011
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Setd2
SET domain containing 2, histone lysine methyltransferase
involved_in
ISO
(MGI:5908786|PMID:25242323)
RGD
PMID:25242323
MGI:5908786
NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
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Sox17
SRY-box transcription factor 17
acts_upstream_of
ISO
(MGI:3764939|PMID:17940068)
RGD
PMID:17940068
MGI:3764939
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Vtn
vitronectin
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810
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Cdc73
cell division cycle 73
involved_in
IEA ISO ISS
GO_REF:0000107 (MGI:3849235|PMID:19345177) GO_REF:0000024
Ensembl RGD UniProt
PMID:19345177
GO_REF:0000024 GO_REF:0000107 MGI:3849235
NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656
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Ctnnb1
catenin beta 1
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1858007|MGI:2148567 (MGI:3625553|PMID:12194849) GO_REF:0000107
RGD Ensembl
PMID:12194849
GO_REF:0000107 MGI:3625553
NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
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Ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component
involved_in
ISO
(MGI:3849235|PMID:19345177)
RGD
PMID:19345177
MGI:3849235
NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303
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Leo1
LEO1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISS ISO
GO_REF:0000024 (MGI:3849235|PMID:19345177)
UniProt RGD
PMID:19345177
GO_REF:0000024 MGI:3849235
NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983
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Paf1
PAF1 homolog, Paf1/RNA polymerase II complex component
involved_in
ISS ISO
GO_REF:0000024 (MGI:3849235|PMID:19345177)
UniProt RGD
PMID:19345177
GO_REF:0000024 MGI:3849235
NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237
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Pou5f1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO
(MGI:1355046|PMID:10742100)
RGD
PMID:10742100
MGI:1355046
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Rtf1
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
involved_in
ISO
(MGI:3849235|PMID:19345177)
RGD
PMID:19345177
MGI:3849235
NCBI chr 3:106,659,363...106,718,970
Ensembl chr 3:106,659,308...106,718,970
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Gata6
GATA binding protein 6
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (MGI:4442295|PMID:20308546)
Ensembl RGD
PMID:20308546
GO_REF:0000107 MGI:4442295
NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532
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Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within
ISO
(MGI:4442295|PMID:20308546)
RGD
PMID:20308546
MGI:4442295
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Eomes
eomesodermin
involved_in acts_upstream_of_or_within
IBA ISO
PMID:21873635 MGI:3774028 (MGI:4887279|PMID:21245162)
RGD
PMID:21245162 PMID:21873635
MGI:4887279 , RGD:13792537
NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
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Hnf1b
HNF1 homeobox B
acts_upstream_of_or_within involved_in
ISO IEA
MGI:1857856 (MGI:3807614|PMID:18635606) GO_REF:0000107
RGD Ensembl
PMID:18635606
GO_REF:0000107 MGI:3807614
NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
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Nanog
Nanog homeobox
acts_upstream_of_or_within
ISO
(PMID:20713518)
RGD
PMID:20713518
NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
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Pou5f1
POU class 5 homeobox 1
acts_upstream_of_or_within
ISO
(PMID:20713518)
RGD
PMID:20713518
NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
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Sox17
SRY-box transcription factor 17
involved_in
ISO
(MGI:4946573|PMID:21305474)
RGD
PMID:21305474
MGI:4946573
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Sox2
SRY-box transcription factor 2
acts_upstream_of_or_within
ISO
(PMID:21245162)
RGD
PMID:21245162
NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
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Bmpr1a
bone morphogenetic protein receptor type 1A
acts_upstream_of_or_within
ISO
MGI:2158342 (MGI:3051920|PMID:15136140)
RGD
PMID:15136140
MGI:3051920
NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
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Eomes
eomesodermin
acts_upstream_of
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
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Foxa2
forkhead box A2
acts_upstream_of
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326
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Ldb1
LIM domain binding 1
acts_upstream_of
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013
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Lhx1
LIM homeobox 1
acts_upstream_of
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
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Nodal
nodal growth differentiation factor
involved_in acts_upstream_of_or_within
ISO
(PMID:21741376) MGI:2158732 (MGI:2155575|PMID:11311163), (MGI:2677178|PMID:14511481)
RGD
PMID:11311163 PMID:14511481 PMID:21741376
MGI:2155575 MGI:2677178
NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
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Otx2
orthodenticle homeobox 2
acts_upstream_of
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
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Smad4
SMAD family member 4
acts_upstream_of
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438
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Ssbp3
single stranded DNA binding protein 3
acts_upstream_of
ISO
MGI:2656539|MGI:5698524 (MGI:5697986|PMID:26494787)
RGD
PMID:26494787
MGI:5697986
NCBI chr 5:121,691,370...121,828,035
Ensembl chr 5:121,691,393...121,827,992
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Zfp36l1
zinc finger protein 36, C3H type-like 1
involved_in
ISS ISO
GO_REF:0000024 (MGI:5784967|PMID:24733888)
UniProt RGD
PMID:24733888
GO_REF:0000024 MGI:5784967
NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748
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Col5a1
collagen type V alpha 1 chain
involved_in
ISO IEA
(PMID:23154389) GO_REF:0000107
RGD Ensembl
PMID:23154389
GO_REF:0000107
NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
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Col5a2
collagen type V alpha 2 chain
involved_in
ISO
(PMID:23154389)
RGD
PMID:23154389
NCBI chr 9:47,448,736...47,598,396
Ensembl chr 9:47,448,736...47,598,154
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Mesp1
mesoderm posterior bHLH transcription factor 1
involved_in
ISO
(MGI:4441249|PMID:18593560)
RGD
PMID:18593560
MGI:4441249
NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875
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Macroh2a1
macroH2A.1 histone
involved_in
ISO
(PMID:23595991)
RGD
PMID:23595991
NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072
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Map2k1
mitogen activated protein kinase kinase 1
acts_upstream_of_or_within involved_in
ISO IEA
(MGI:3689690|PMID:16908534) GO_REF:0000107
RGD Ensembl
PMID:16908534
GO_REF:0000107 MGI:3689690
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
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Sox17
SRY-box transcription factor 17
acts_upstream_of_or_within
ISO
(MGI:3764939|PMID:17940068)
RGD
PMID:17940068
MGI:3764939
NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228
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Dkk1
dickkopf WNT signaling pathway inhibitor 1
involved_in
ISO
(PMID:20559569)
RGD
PMID:20559569
NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
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