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ONTOLOGY REPORT - ANNOTATIONS


Term:sensory organ development
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Accession:GO:0007423 term browser browse the term
Definition:The process whose specific outcome is the progression of sensory organs over time, from its formation to the mature structure.
Synonyms:exact_synonym: sense organ development



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sensory organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:21,903,136...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406
JBrowse link
G Atoh1 atonal bHLH transcription factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
JBrowse link
G Atoh8 atonal bHLH transcription factor 8 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 4:104,259,992...104,292,168
Ensembl chr 4:104,259,992...104,292,168
JBrowse link
G Bhlha15 basic helix-loop-helix family, member a15 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr12:10,420,465...10,424,641
Ensembl chr12:10,420,467...10,424,713
JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223
JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B acts_upstream_of_or_within ISO MGI:1928295 (PMID:8789948) RGD PMID:8789948 NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279
JBrowse link
G Myo7a myosin VIIA involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Myo7b myosin VIIb involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:23,588,307...23,669,841
Ensembl chr18:23,588,307...23,669,809
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurod2 neuronal differentiation 2 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000118
GO_Central
TreeGrafter
GO_REF:0000033 GO_REF:0000118 NCBI chr10:83,323,801...83,327,986
Ensembl chr10:83,324,442...83,327,986
JBrowse link
G Neurod6 neuronal differentiation 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:84,846,659...84,849,905
Ensembl chr 4:84,846,231...84,849,999
JBrowse link
G Neurog1 neurogenin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Neurog2 neurogenin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:216,092,709...216,095,276
Ensembl chr 2:216,093,363...216,094,154
JBrowse link
G Neurog3 neurogenin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:30,079,780...30,081,262
Ensembl chr20:30,079,780...30,081,262
JBrowse link
G Olig1 oligodendrocyte transcription factor 1 involved_in IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
GO_REF:0000033 GO_REF:0000118 NCBI chr11:30,514,379...30,516,521
Ensembl chr11:30,514,379...30,516,521
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:30,475,510...30,478,886
Ensembl chr11:30,475,398...30,480,152
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:14,081,259...14,083,336
Ensembl chr 1:14,081,328...14,082,149
JBrowse link
G Sox3 SRY-box transcription factor 3 involved_in ISO (MGI:3765357|PMID:17728342) RGD PMID:17728342 MGI:3765357 NCBI chr  X:139,308,608...139,310,687
Ensembl chr  X:139,309,329...139,310,678
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:76242|PMID:7555706) RGD PMID:7555706 MGI:76242 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (MGI:76242|PMID:7555706) RGD PMID:7555706 MGI:76242 NCBI chr 9:21,786,251...21,816,054
Ensembl chr 9:21,786,258...21,814,520
JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH-like homeobox 2 acts_upstream_of_or_within ISO (PMID:14998930) RGD PMID:14998930 NCBI chr14:3,340,465...3,345,362
Ensembl chr14:3,340,465...3,345,353
JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510
JBrowse link
G Foxn4 forkhead box N4 acts_upstream_of_or_within ISO MGI:3054789 (PMID:15363391) RGD PMID:15363391 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of ISO (PMID:15976303) RGD PMID:15976303 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:2149672 (PMID:16038893)
Ensembl
RGD
PMID:16038893 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:20459797) RGD PMID:20459797 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:2158684|PMID:11861467)
UniProt
RGD
PMID:11861467 GO_REF:0000024 MGI:2158684 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO (MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:2158684 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:3701996 (PMID:17301087)
(MGI:3691257|PMID:17075007)
UniProt
RGD
PMID:17075007 PMID:17301087 GO_REF:0000024 MGI:3691257 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
GO_REF:0000024
(MGI:5546314|PMID:23652001)
UniProt
RGD
PMID:23652001 GO_REF:0000024 MGI:5546314 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of ISO (PMID:18973577) RGD PMID:18973577 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
JBrowse link
anterior semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:17395647) RGD PMID:17395647 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
auditory receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg10 ALG10, alpha-1,2-glucosyltransferase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:121,335,048...121,345,517
Ensembl chr 7:121,335,042...121,340,308
JBrowse link
G Clrn1 clarin 1 acts_upstream_of_or_within ISO MGI:3850171 (PMID:19414487) RGD PMID:19414487 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
JBrowse link
G Elmod3 ELMO domain containing 3 acts_upstream_of_or_within ISO MGI:6455516 (PMID:31628468) RGD PMID:31628468 NCBI chr 4:104,614,665...104,653,122
Ensembl chr 4:104,614,676...104,653,053
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:3574787 (PMID:15630379) RGD PMID:15630379 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:2680653 (PMID:26084842)
Ensembl
RGD
PMID:26084842 GO_REF:0000107 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Lrtomt leucine rich transmembrane and O-methyltransferase domain containing involved_in ISO (MGI:3799635|PMID:18794526) RGD PMID:18794526 MGI:3799635 NCBI chr 1:156,266,655...156,268,704
Ensembl chr 1:156,266,655...156,268,704
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5477842|PMID:23533177) RGD PMID:23533177 MGI:5477842 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Pdzd7 PDZ domain containing 7 acts_upstream_of_or_within ISO MGI:4433578 (PMID:24334608) RGD PMID:24334608 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G Slc4a7 solute carrier family 4 member 7 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:2682641 (PMID:12808454)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:12808454 GO_REF:0000033 GO_REF:0000118 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781
JBrowse link
G Tmc1 transmembrane channel-like 1 acts_upstream_of_or_within ISO MGI:5427097 (PMID:22105175) RGD PMID:22105175 NCBI chr 1:218,275,249...218,446,013
Ensembl chr 1:218,276,417...218,445,955
JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in NAS PMID:10878608 UniProt PMID:10878608 RGD:8553270 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Jag2 jagged canonical Notch ligand 2 involved_in ISS
ISO
IEA
PMID:10080181
(MGI:1332721|PMID:10080181)
GO_REF:0000107
RGD
Ensembl
PMID:10080181 PMID:10080181 GO_REF:0000107 MGI:1332721, RGD:8553713 NCBI chr 6:131,983,059...132,005,665
Ensembl chr 6:131,983,056...132,005,818
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:3044585|MGI:3046196 (PMID:19154718) RGD PMID:19154718 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:3046196|MGI:3583755 (PMID:19154718) RGD PMID:19154718 NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353
JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:16407553) RGD PMID:16407553 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154
JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:2155983 (PMID:10364557) RGD PMID:10364557 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:4354110 (PMID:19363478) RGD PMID:19363478 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (PMID:19936227) RGD PMID:19936227 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5558098 (PMID:24302887)
Ensembl
RGD
PMID:24302887 GO_REF:0000107 NCBI chr14:95,645,955...95,977,120
Ensembl chr14:95,646,038...95,977,113
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd24 ankyrin repeat domain 24 involved_in ISO (MGI:6885507|PMID:35175278) RGD PMID:35175278 MGI:6885507 NCBI chr 7:8,061,634...8,081,142
Ensembl chr 7:8,061,953...8,081,142
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Cdh23 cadherin-related 23 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (PMID:11138008), (PMID:11322776), (PMID:12121736), (PMID:15537665), (PMID:17050716), (PMID:23217710), (PMID:7610888), (PMID:8790740), (PMID:9039475)
Ensembl
RGD
PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Clic5 chloride intracellular channel 5 acts_upstream_of_or_within ISO MGI:3663254 (PMID:17021174) RGD PMID:17021174 NCBI chr 9:16,710,980...16,813,502
Ensembl chr 9:16,710,980...16,813,427
JBrowse link
G Clrn1 clarin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3850171 (PMID:19414487), (PMID:19423712)
Ensembl
RGD
PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr 2:143,084,030...143,130,948
Ensembl chr 2:143,084,030...143,130,948
JBrowse link
G Clrn2 clarin 2 involved_in ISO (MGI:6810803|PMID:33496845) RGD PMID:33496845 MGI:6810803 NCBI chr14:65,656,029...65,666,325
Ensembl chr14:65,656,550...65,666,193
JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 acts_upstream_of_or_within ISO MGI:2139535|MGI:6281113|MGI:6281114 (PMID:30380417) RGD PMID:30380417 NCBI chr18:33,984,689...33,998,094
Ensembl chr18:33,984,689...33,998,094
JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 acts_upstream_of_or_within ISO MGI:3055797|MGI:3718054 (PMID:15905332), (PMID:17876667), (PMID:23217710) RGD PMID:15905332 PMID:17876667 PMID:23217710 NCBI chr20:6,632,324...6,642,534
Ensembl chr20:6,632,362...6,642,532
JBrowse link
G Myo3a myosin IIIA involved_in ISO MGI:2448580 (PMID:26754646) RGD PMID:26754646 NCBI chr17:84,543,465...84,759,562
Ensembl chr17:84,543,552...84,759,042
JBrowse link
G Myo3b myosin IIIB involved_in ISO MGI:2183924 (PMID:26754646) RGD PMID:26754646 NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1860092|MGI:2155422 (PMID:11753415), (PMID:12121736), (PMID:17050716) RGD PMID:11753415 PMID:12121736 PMID:17050716 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 acts_upstream_of_or_within ISO MGI:3526430 (PMID:24920589) RGD PMID:24920589 NCBI chr10:100,403,189...100,420,290
Ensembl chr10:100,403,069...100,420,598
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (PMID:10978835), (PMID:11124469), (PMID:15537665), (PMID:16887306), (PMID:23217710) RGD PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pdzd7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:4433578 (PMID:24334608)
GO_Central
RGD
PMID:24334608 GO_REF:0000033 NCBI chr 1:243,888,295...243,907,778
Ensembl chr 1:243,888,281...243,906,839
JBrowse link
G Pls1 plastin 1 involved_in ISO (MGI:5608770|PMID:25124451) RGD PMID:25124451 MGI:5608770 NCBI chr 8:96,316,703...96,426,592
Ensembl chr 8:96,317,849...96,385,195
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:6193260|PMID:29961578)
UniProt
RGD
PMID:29961578 GO_REF:0000024 MGI:6193260 NCBI chr14:30,859,109...30,879,828
Ensembl chr14:30,862,553...30,894,354
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in ISO (MGI:5789047|PMID:27269051) RGD PMID:27269051 MGI:5789047 NCBI chr17:40,323,748...40,547,482
Ensembl chr17:40,323,867...40,548,092
JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (PMID:20215345) RGD PMID:20215345 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (PMID:20215345) RGD PMID:20215345 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Sod1 superoxide dismutase 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857872 (PMID:10464373), (PMID:10466888)
UniProt
RGD
PMID:10464373 PMID:10466888 GO_REF:0000024 NCBI chr11:29,456,673...29,462,249
Ensembl chr11:29,456,558...29,462,249
JBrowse link
G Strc stereocilin involved_in
acts_upstream_of_or_within
ISO (MGI:5430850|PMID:21165971)
MGI:109575|MGI:3818633 (PMID:18849963), (PMID:30801007)
RGD PMID:18849963 PMID:21165971 PMID:30801007 MGI:5430850 NCBI chr 3:108,335,920...108,355,114
Ensembl chr 3:108,335,747...108,354,134
JBrowse link
G Tecta tectorin alpha acts_upstream_of_or_within ISO MGI:2153816 (PMID:30801007) RGD PMID:30801007 NCBI chr 8:42,707,962...42,779,726
Ensembl chr 8:42,707,962...42,779,707
JBrowse link
G Tprn taperin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2685697 (PMID:30380417)
GO_Central
RGD
PMID:30380417 GO_REF:0000033 NCBI chr 3:8,076,164...8,083,642
Ensembl chr 3:8,075,137...8,083,642
JBrowse link
G Triobp TRIO and F-actin binding protein acts_upstream_of_or_within ISO MGI:4881773 (PMID:20510926) RGD PMID:20510926 NCBI chr 7:110,505,916...110,569,301
Ensembl chr 7:110,506,248...110,562,474
JBrowse link
G Whrn whirlin involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:4432119 (PMID:27117407)
GO_REF:0000033
GO_REF:0000118
Ensembl
RGD
GO_Central
TreeGrafter
PMID:27117407 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 acts_upstream_of_or_within ISO MGI:3526871 (PMID:15572692) RGD PMID:15572692 NCBI chr 9:61,827,186...61,905,703
Ensembl chr 9:61,827,139...61,905,699
JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493) RGD PMID:10973493 MGI:1889403 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1857891|MGI:2180721 (PMID:15366004), (PMID:16368932) RGD PMID:15366004 PMID:16368932 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO MGI:2448591 (PMID:11044403) RGD PMID:11044403 NCBI chr 1:77,202,436...77,319,298
Ensembl chr 1:77,202,436...77,319,298
JBrowse link
G B3glct beta 3-glucosyltransferase acts_upstream_of_or_within ISO (PMID:31600785) RGD PMID:31600785 NCBI chr12:5,255,521...5,346,807
Ensembl chr12:5,255,740...5,346,810
JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO MGI:5301332 (PMID:22179047) RGD PMID:22179047 NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:1857137|MGI:2137520 (PMID:14681194), (PMID:9268572) RGD PMID:9268572 PMID:14681194 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:1338938 (PMID:15673568) RGD PMID:15673568 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) RGD PMID:15454078 NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO MGI:5708063 (PMID:24947469) RGD PMID:24947469 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO MGI:1933758|MGI:3840687 (PMID:19276117) RGD PMID:19276117 NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
JBrowse link
G Cep290 centrosomal protein 290 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:3588650 (PMID:16207732) RGD PMID:16207732 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1916503 (PMID:12546709) RGD PMID:12546709 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO MGI:88515 (PMID:12546709) RGD PMID:12546709 NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157
JBrowse link
G Cryba1 crystallin, beta A1 acts_upstream_of_or_within ISO MGI:1857969 (PMID:10585769) RGD PMID:10585769 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726
JBrowse link
G Cryba4 crystallin, beta A4 involved_in ISO (PMID:16960806) RGD PMID:16960806 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221
JBrowse link
G Crybb2 crystallin, beta B2 acts_upstream_of_or_within IEP
ISO
MGI:2137511 (PMID:11381063) RGD PMID:11381063 PMID:8706714 RGD:1298813 NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671
JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:11773036) RGD PMID:11773036 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:15967433 RGD:2306661 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
(PMID:25406291)
GO_REF:0000107
RGD
Ensembl
PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (PMID:26114487) RGD PMID:26114487 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:51,499,670...51,703,976
Ensembl chr18:51,499,737...51,703,976
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO MGI:3042750 (PMID:15105374) RGD PMID:15105374 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612
JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4835411 (PMID:19155270), (PMID:23591631) RGD PMID:19155270 PMID:23591631 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1856705|MGI:1857869 (PMID:10395790), (PMID:10767326) RGD PMID:10395790 PMID:10767326 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:10767326) RGD PMID:10767326 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within ISO MGI:2387330 (PMID:11309658) RGD PMID:11309658 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within ISO MGI:3723630 (PMID:17619227) RGD PMID:17619227 NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:2137525|MGI:3052418 (PMID:11782410), (PMID:15253273) RGD PMID:11782410 PMID:15253273 NCBI chr 2:184,490,840...184,492,456
Ensembl chr 2:184,490,840...184,492,456
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:98297 (PMID:18582859) RGD PMID:18582859 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (PMID:32049342) RGD PMID:32049342 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO MGI:1915913 (PMID:21296886) RGD PMID:21296886 NCBI chr 3:41,800,552...41,937,729
Ensembl chr 3:41,801,930...41,936,901
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:4942413 (PMID:21377456) RGD PMID:21377456 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:3703278|PMID:17331197)
UniProt
RGD
PMID:17331197 GO_REF:0000024 MGI:3703278 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO MGI:3822474 (PMID:19093031) RGD PMID:19093031 NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1857713 (PMID:10196361) RGD PMID:10196361 NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Lama1 laminin subunit alpha 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO MGI:1862040 (PMID:9238094) RGD PMID:9238094 NCBI chr 1:93,837,597...93,843,769
Ensembl chr 1:93,837,597...93,843,769
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (PMID:10660670), (PMID:20568247) RGD PMID:10660670 PMID:20568247 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899
JBrowse link
G Mab21l1 mab-21 like 1 acts_upstream_of_or_within ISO (PMID:12642482) RGD PMID:12642482 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885
JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO MGI:3511363 (PMID:15385160) RGD PMID:15385160 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:12941696) RGD PMID:12941696 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:2684189 (PMID:14500757) RGD PMID:14500757 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Mitf melanocyte inducing transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:88401 (PMID:15576400)
Ensembl
RGD
PMID:15576400 GO_REF:0000107 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within ISO MGI:5288506 (PMID:21531335) RGD PMID:21531335 NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864
JBrowse link
G Mtnr1a melatonin receptor 1A IEP RGD PMID:12890503 RGD:9588674 NCBI chr16:47,144,461...47,163,919
Ensembl chr16:47,144,461...47,163,919
JBrowse link
G Mtnr1b melatonin receptor 1B IEP RGD PMID:12890503 RGD:9588674 NCBI chr 8:12,638,219...12,652,737
Ensembl chr 8:12,638,219...12,652,737
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857973|MGI:3055340 (PMID:19531352) RGD PMID:19531352 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:108055 (PMID:11861467) RGD PMID:11861467 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurod4 neuronal differentiation 4 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1339708 (PMID:11861467)
GO_Central
RGD
PMID:11861467 GO_REF:0000033 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (PMID:18477394) RGD PMID:18477394 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2176490|MGI:2176560 (PMID:15371513), (PMID:16000615) RGD PMID:15371513 PMID:16000615 NCBI chr20:46,050,134...46,071,257
Ensembl chr20:46,050,414...46,073,949
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857673 (PMID:12756174)
UniProt
RGD
PMID:12756174 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:102764|MGI:108564|MGI:1856158|MGI:1931308|MGI:1934347|MGI:1934348 (PMID:11062307), (PMID:11069887), (PMID:12072567), (PMID:12183364), (PMID:12648492), (PMID:12756174), (PMID:16080917) RGD PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:4340776 (PMID:25220058) RGD PMID:25220058 NCBI chr20:12,190,597...12,278,723
Ensembl chr20:12,191,648...12,278,710
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9618168) RGD PMID:9618168 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 acts_upstream_of_or_within ISO MGI:3530910 (PMID:16847320) RGD PMID:16847320 NCBI chr20:9,662,866...9,705,030
Ensembl chr20:9,662,899...9,703,727
JBrowse link
G Prss56 serine protease 56 involved_in
acts_upstream_of_or_within
ISO (PMID:21397065)
MGI:5444189 (PMID:21532570)
RGD PMID:21397065 PMID:21532570 NCBI chr 9:87,842,806...87,859,978
Ensembl chr 9:87,854,805...87,859,978
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA
(PMID:20512159)
GO_REF:0000107
RGD
Ensembl
PMID:20512159 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rax retina and anterior neural fold homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856862|MGI:2152531 (PMID:11105055), (PMID:13970081), (PMID:15789424), (PMID:17247120), (PMID:640224)
Ensembl
RGD
PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 GO_REF:0000107 NCBI chr18:59,463,347...59,467,469
Ensembl chr18:59,463,737...59,467,431
JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within ISO (PMID:19474196) RGD PMID:19474196 NCBI chr 3:91,841,052...91,855,295
Ensembl chr 3:91,841,052...91,855,295
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEP RGD PMID:9512345 RGD:633787 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904), (PMID:17558409) RGD PMID:17553904 PMID:17558409 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:9376317) RGD PMID:9376317 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1934268|MGI:3052661|MGI:95729 (PMID:12195432), (PMID:12756179), (PMID:16236765), (PMID:18582859)
Ensembl
RGD
PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:97490 (PMID:12072567) RGD PMID:12072567 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Slc25a25 solute carrier family 25 member 25 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99778 (PMID:21296886)
Ensembl
RGD
PMID:21296886 GO_REF:0000107 NCBI chr 3:15,708,702...15,742,195
Ensembl chr 3:15,708,703...15,742,216
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (PMID:23543054) RGD PMID:23543054 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISS
ISO
GO_REF:0000024
(PMID:21901792)
UniProt
RGD
PMID:21901792 GO_REF:0000024 NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (PMID:14757819) RGD PMID:14757819 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4127851|MGI:4440463 (PMID:20159594) RGD PMID:20159594 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
JBrowse link
G Tmem231 transmembrane protein 231 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4284576 (PMID:22179047)
Ensembl
RGD
PMID:22179047 GO_REF:0000107 NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISS
ISO
GO_REF:0000024
(PMID:21856951)
UniProt
RGD
PMID:21856951 GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO MGI:88180 (PMID:14681194) RGD PMID:14681194 NCBI chr 9:105,533,116...105,567,460
Ensembl chr 9:105,533,136...105,567,479
JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within ISO MGI:1346018 (PMID:15905411) RGD PMID:15905411 NCBI chr 1:258,324,571...258,342,396
Ensembl chr 1:258,326,276...258,330,192
JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO MGI:1277163 (PMID:15905411) RGD PMID:15905411 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594
JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO MGI:104554 (PMID:15576400) RGD PMID:15576400 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5558098|MGI:5558100 (PMID:24302887)
Ensembl
RGD
PMID:24302887 GO_REF:0000107 NCBI chr14:95,645,955...95,977,120
Ensembl chr14:95,646,038...95,977,113
JBrowse link
G Wt1 WT1 transcription factor involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857268 (PMID:11889045)
UniProt
RGD
PMID:11889045 GO_REF:0000024 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO (PMID:27687499) RGD PMID:27687499 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO MGI:1857807 (PMID:11891232) RGD PMID:11891232 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within ISO MGI:2150059 (PMID:11891232) RGD PMID:11891232 NCBI chr 7:130,722,675...130,726,207
Ensembl chr 7:130,721,748...130,726,209
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:88180 (PMID:9268572) RGD PMID:9268572 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654|MGI:2136986 (PMID:16154126), (PMID:16854970) RGD PMID:16154126 PMID:16854970 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Col8a1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO MGI:88464 (PMID:16051690) RGD PMID:16051690 NCBI chr11:42,776,851...42,906,432
Ensembl chr11:42,777,628...42,906,424
JBrowse link
G Col8a2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO MGI:88463 (PMID:16051690) RGD PMID:16051690 NCBI chr 5:138,586,201...138,613,627
Ensembl chr 5:138,585,999...138,612,850
JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within ISO MGI:2677305 (PMID:12971893) RGD PMID:12971893 NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839
JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within ISO MGI:2149765 (PMID:12971893) RGD PMID:12971893 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (PMID:26114487) RGD PMID:26114487 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO MGI:2449673 (PMID:15976303) RGD PMID:15976303 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (PMID:8387379) RGD PMID:8387379 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr 4:157,551,276...157,552,924 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO MGI:103223 (PMID:22627278) RGD PMID:22627278 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:3827087 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Mfn2 mitofusin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861626 (PMID:16104381)
Ensembl
RGD
PMID:16104381 GO_REF:0000107 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3605480 (PMID:15728677) RGD PMID:15728677 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1857444 (PMID:7926784)
GO_REF:0000107
HGNC-UCL
RGD
Ensembl
PMID:7926784 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Ring1 ring finger protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:99150 (PMID:16624538)
Ensembl
RGD
PMID:16624538 GO_REF:0000107 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620
JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) RGD PMID:22766609 NCBI chr16:41,251,909...43,978,594
Ensembl chr16:41,252,182...43,978,594
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:106918|MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO MGI:1101770 (PMID:16624538) RGD PMID:16624538 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA
(PMID:18654668)
GO_REF:0000033
(MGI:3838023|PMID:19228982)
RGD
GO_Central
PMID:18654668 PMID:19228982 GO_REF:0000033 MGI:3838023 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) RGD PMID:20300562 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:5693671 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (PMID:12808454) RGD PMID:12808454 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO MGI:5140723 (PMID:21646512) RGD PMID:21646512 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:17064680
(MGI:3703484|PMID:17064680)
RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3692444 (PMID:23676271)
Ensembl
RGD
PMID:23676271 GO_REF:0000107 NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Notch2 notch receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3617328 (PMID:23676271)
Ensembl
RGD
PMID:23676271 GO_REF:0000107 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
(PMID:21856951)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21856951 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (PMID:22627278) RGD PMID:22627278 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:3719969 NCBI chr 5:144,549,350...144,621,259
Ensembl chr 5:144,549,363...144,620,865
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3797299|PMID:18423449)
UniProt
RGD
PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
cochlea development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 ADAM metallopeptidase domain 10 involved_in ISO
IEA
(MGI:6316556|PMID:30639848)
GO_REF:0000107
RGD
Ensembl
PMID:30639848 GO_REF:0000107 MGI:6316556 NCBI chr 8:71,346,008...71,477,889
Ensembl chr 8:71,345,837...71,477,889
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 involved_in ISO (MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:1275896 NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Calb1 calbindin 1 IEP RGD PMID:16120789 RGD:7175527 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
JBrowse link
G Ccna2 cyclin A2 IEP RGD PMID:19429027 RGD:10054469 NCBI chr 2:119,427,239...119,433,645
Ensembl chr 2:119,426,089...119,433,577
JBrowse link
G Cdh1 cadherin 1 involved_in
acts_upstream_of_or_within
ISO (MGI:6316556|PMID:30639848)
MGI:2389021|MGI:3841145 (PMID:21925491)
RGD PMID:21925491 PMID:30639848 MGI:6316556 NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775
JBrowse link
G Cdh23 cadherin-related 23 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856228 (PMID:13336002)
Ensembl
RGD
PMID:13336002 GO_REF:0000107 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Cecr2 CECR2, histone acetyl-lysine reader acts_upstream_of_or_within ISO MGI:3574034 (PMID:21246654) RGD PMID:21246654 NCBI chr 4:153,890,310...153,998,078
Ensembl chr 4:153,890,206...153,993,451
JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO MGI:4867020 (PMID:21303848) RGD PMID:21303848 NCBI chr 1:160,104,931...160,138,958
Ensembl chr 1:160,104,931...160,124,808
JBrowse link
G Epha4 Eph receptor A4 involved_in ISO (MGI:6316556|PMID:30639848) RGD PMID:30639848 MGI:6316556 NCBI chr 9:78,815,460...78,958,139
Ensembl chr 9:78,815,460...78,958,139
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:17557302) RGD PMID:17557302 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Gabra5 gamma-aminobutyric acid type A receptor subunit alpha 5 involved_in ISO (MGI:3664129|PMID:17021187) RGD PMID:17021187 MGI:3664129 NCBI chr 1:108,268,728...108,381,670
Ensembl chr 1:108,268,776...108,380,917
JBrowse link
G Gabrb2 gamma-aminobutyric acid type A receptor subunit beta 2 involved_in ISO
IEA
(MGI:3664129|PMID:17021187)
GO_REF:0000107
RGD
Ensembl
PMID:17021187 GO_REF:0000107 MGI:3664129 NCBI chr10:26,936,592...27,156,141
Ensembl chr10:26,936,551...27,151,251
JBrowse link
G Gabrb3 gamma-aminobutyric acid type A receptor subunit beta 3 involved_in ISO (MGI:3664129|PMID:17021187) RGD PMID:17021187 MGI:3664129 NCBI chr 1:108,467,047...108,702,522
Ensembl chr 1:108,296,124...108,698,961
JBrowse link
G Gata2 GATA binding protein 2 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Gata3 GATA binding protein 3 IEP RGD PMID:20006695 RGD:9479067 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO MGI:1856991 (PMID:13336002) RGD PMID:13336002 NCBI chr14:40,004,169...40,126,571
Ensembl chr14:40,004,169...40,126,571
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1341884|MGI:2149672 (PMID:18302773)
Ensembl
RGD
PMID:18302773 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO MGI:104853|MGI:104876|MGI:2447620 (PMID:18302773) RGD PMID:18302773 NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within ISO MGI:3817268 (PMID:25605782) RGD PMID:25605782 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift27 intraflagellar transport 27 acts_upstream_of_or_within ISO MGI:4461616 (PMID:25605782) RGD PMID:25605782 NCBI chr 7:109,738,622...109,754,416
Ensembl chr 7:109,738,622...109,754,416
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2135272 (PMID:18066062) RGD PMID:18066062 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Kcnk2 potassium two pore domain channel subfamily K member 2 IEP RGD PMID:15094499 RGD:2316534 NCBI chr13:100,766,101...100,963,435
Ensembl chr13:100,766,113...100,963,435
JBrowse link
G Kcnk3 potassium two pore domain channel subfamily K member 3 IEP RGD PMID:15094499 RGD:2316534 NCBI chr 6:25,761,487...25,799,153
Ensembl chr 6:25,763,228...25,799,153
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:1931858 (PMID:15891643)
Ensembl
RGD
PMID:15891643 GO_REF:0000107 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in ISO (PMID:26196677) RGD PMID:26196677 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:18420419 RGD:2317082 NCBI chr 5:73,058,427...73,169,696
Ensembl chr 5:73,058,121...73,171,932
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716 (PMID:13336002), (PMID:14198707), (PMID:6627025) RGD PMID:6627025 PMID:13336002 PMID:14198707 MGI:63006 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IEP RGD PMID:10494076 RGD:2325650 NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
JBrowse link
G Ocm oncomodulin IEP RGD PMID:16120789 RGD:7175527 NCBI chr12:10,535,619...10,596,705
Ensembl chr12:10,586,897...10,596,707
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:17828551 RGD:13208944 NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109
JBrowse link
G Otof otoferlin IEP RGD PMID:17229086 RGD:2316502 NCBI chr 6:25,928,018...26,024,631
Ensembl chr 6:25,928,055...26,024,631
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5477842|PMID:23533177) RGD PMID:23533177 MGI:5477842 NCBI chr10:59,533,042...59,591,808
Ensembl chr10:59,534,117...59,591,808
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Psap prosaposin acts_upstream_of_or_within ISO MGI:1888378 (PMID:17167097) RGD PMID:17167097 NCBI chr20:28,214,229...28,240,501
Ensembl chr20:28,214,271...28,240,498
JBrowse link
G Pvalb parvalbumin IEP RGD PMID:16120789 RGD:7175527 NCBI chr 7:109,772,939...109,787,954
Ensembl chr 7:109,772,593...109,784,561
JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:22927466) RGD PMID:22927466 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:24064385 RGD:9999152 NCBI chr 7:23,994,212...24,049,498
Ensembl chr 7:23,994,217...24,048,079
JBrowse link
G Slc26a5 solute carrier family 26 member 5 IEP RGD PMID:20006695 RGD:9479067 NCBI chr 4:13,210,260...13,249,289
Ensembl chr 4:13,210,260...13,249,289
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (PMID:19936227) RGD PMID:19936227 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Sobp sine oculis binding protein homolog involved_in ISO (MGI:3801556|PMID:18579736) RGD PMID:18579736 MGI:3801556 NCBI chr20:46,482,265...46,661,452
Ensembl chr20:46,482,765...46,663,541
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:98715 (PMID:18066062) RGD PMID:18066062 NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1915838 (PMID:18606138)
Ensembl
RGD
PMID:18606138 GO_REF:0000107 NCBI chr 7:70,122,474...70,132,756
Ensembl chr 7:70,122,474...70,132,756
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within ISO MGI:106613 (PMID:16116426) RGD PMID:16116426 NCBI chr 5:166,456,989...166,468,733
Ensembl chr 5:166,456,686...166,468,664
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO MGI:108100|MGI:94941 (PMID:16116426), (PMID:19008950) RGD PMID:16116426 PMID:19008950 NCBI chr10:54,723,356...54,732,823
Ensembl chr10:54,723,411...54,732,820
JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO MGI:106613|MGI:2135272 (PMID:19008950) RGD PMID:19008950 NCBI chr11:80,365,446...80,382,641
Ensembl chr11:80,366,117...80,382,462
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803 (PMID:10072433) RGD PMID:10072433 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO MGI:98958 (PMID:17433286) RGD PMID:17433286 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
JBrowse link
G Fzd2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2135272 (PMID:20940229)
Ensembl
RGD
PMID:20940229 GO_REF:0000107 NCBI chr10:87,561,866...87,563,776
Ensembl chr10:87,561,326...87,565,334
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:17395647) RGD PMID:17395647 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:2135272 (PMID:20643356) RGD PMID:20643356 NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hpn hepsin involved_in ISS
ISO
GO_REF:0000024
(MGI:5306554|PMID:20683358)
UniProt
RGD
PMID:20683358 GO_REF:0000024 MGI:5306554 NCBI chr 1:86,337,085...86,352,785
Ensembl chr 1:86,337,087...86,352,811
JBrowse link
G Myo3a myosin IIIA involved_in ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr17:84,543,465...84,759,562
Ensembl chr17:84,543,552...84,759,042
JBrowse link
G Myo3b myosin IIIB involved_in ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373
JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857673 (PMID:16916509)
UniProtKB:Q00288 (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 MGI:4822275 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:P70323 (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr  X:75,858,646...75,859,923
Ensembl chr  X:75,858,646...75,859,923
JBrowse link
G Ptk7 protein tyrosine kinase 7 acts_upstream_of_or_within ISO MGI:3640803 (PMID:20704721) RGD PMID:20704721 NCBI chr 9:14,352,155...14,418,473
Ensembl chr 9:14,351,202...14,418,494
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:11,037,028...11,057,251
Ensembl chr12:11,036,698...11,057,251
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:2655195 (PMID:12874121) RGD PMID:12874121 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2385468|MGI:3841145 (PMID:20346939)
UniProt
RGD
PMID:20346939 GO_REF:0000024 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179136 (PMID:17825816)
UniProtKB:P62515 (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:17825816 PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO MGI:3044915 (PMID:18353863) RGD PMID:18353863 NCBI chr 8:88,652,054...88,680,081
Ensembl chr 8:88,652,054...88,680,058
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:6710296|PMID:33795231) RGD PMID:33795231 MGI:6710296 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Tshr thyroid stimulating hormone receptor acts_upstream_of_or_within ISO (PMID:10575115) RGD PMID:10575115 NCBI chr 6:110,341,585...110,475,297
Ensembl chr 6:110,341,581...110,474,538
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (PMID:16116426), (PMID:17433286), (PMID:18606138), (PMID:19008950), (PMID:20643356), (PMID:20940229) RGD PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chr13:84,462,731...84,489,404
Ensembl chr13:84,465,527...84,489,378
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857617|MGI:2135272 (PMID:17433286)
Ensembl
RGD
PMID:17433286 GO_REF:0000107 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861230 (PMID:21980308)
Ensembl
RGD
PMID:21980308 GO_REF:0000107 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352) RGD PMID:23580486 PMID:29518352 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO MGI:1934018 (PMID:26607664) RGD PMID:26607664 NCBI chr10:86,001,545...86,009,049
Ensembl chr10:86,001,566...86,008,972
JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:2676199 (PMID:9071226) RGD PMID:9071226 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934
JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO (PMID:27687499) RGD PMID:27687499 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929
JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:17064680
(MGI:3703484|PMID:17064680)
RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Kera keratocan acts_upstream_of_or_within ISO UniProtKB:O60938 (PMID:10802664) RGD PMID:10802664 NCBI chr 7:32,397,382...32,404,837
Ensembl chr 7:32,397,382...32,404,837
JBrowse link
G Krt12 keratin 12 involved_in
acts_upstream_of_or_within
ISO
ISS
IEA
(PMID:26758872)
MGI:3051854 (PMID:8977471)
(MGI:5752087|PMID:26758872)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:8977471 PMID:26758872 GO_REF:0000024 GO_REF:0000107 MGI:5752087 NCBI chr10:84,370,803...84,378,103
Ensembl chr10:84,370,883...84,378,045
JBrowse link
G Limk2 LIM domain kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3612836 (PMID:26234751)
Ensembl
RGD
PMID:26234751 GO_REF:0000107 NCBI chr14:78,208,182...78,286,106
Ensembl chr14:78,218,063...78,286,007
JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA
(PMID:7550230)
GO_REF:0000107
RGD
Ensembl
PMID:7550230 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:5645931 (PMID:29450535)
Ensembl
RGD
PMID:29450535 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3797299|PMID:18423449)
UniProt
RGD
PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2183192 (PMID:16186342) RGD PMID:16186342 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412 (PMID:20574024) RGD PMID:20574024 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
JBrowse link
ear development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1197519|MGI:2156165 (PMID:11709185), (PMID:8170972)
Ensembl
RGD
PMID:8170972 PMID:11709185 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:11709185) RGD PMID:11709185 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bmp5 bone morphogenetic protein 5 acts_upstream_of_or_within ISO MGI:2679550|MGI:3510601|MGI:3521993 (PMID:26234751) RGD PMID:26234751 NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925
JBrowse link
G Ddr1 discoidin domain receptor tyrosine kinase 1 acts_upstream_of_or_within ISO MGI:2388024 (PMID:11283268) RGD PMID:11283268 NCBI chr20:3,042,494...3,064,442
Ensembl chr20:3,044,320...3,064,468
JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO MGI:2180474 (PMID:16330189) RGD PMID:16330189 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Ece1 endothelin converting enzyme 1 involved_in ISO
IEA
(PMID:9915973)
GO_REF:0000107
RGD
Ensembl
PMID:9915973 GO_REF:0000107 NCBI chr 5:150,077,679...150,179,375
Ensembl chr 5:150,077,644...150,179,371
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:3836281 (PMID:26234751) RGD PMID:26234751 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Gata3 GATA binding protein 3 involved_in ISO (PMID:19248180), (PMID:19723756) RGD PMID:19248180 PMID:19723756 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO MGI:1857496 (PMID:7555718) RGD PMID:7555718 NCBI chr 6:123,388,072...123,390,111
Ensembl chr 6:123,388,072...123,390,111
JBrowse link
G Hmx3 H6 family homeobox 3 involved_in ISO (MGI:3612180|PMID:14695375) RGD PMID:14695375 MGI:3612180 NCBI chr 1:186,313,237...186,315,201
Ensembl chr 1:186,313,063...186,315,201
JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (PMID:18477394) RGD PMID:18477394 NCBI chr19:23,355,388...23,450,360
Ensembl chr19:23,355,498...23,448,265
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO MGI:4442387|MGI:4442398|MGI:5461152|MGI:5692073 (PMID:26234751) RGD PMID:26234751 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:61,575,447...61,594,347
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) RGD PMID:17473173 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within ISO MGI:2662475 (PMID:25748314) RGD PMID:25748314 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO MGI:1929775 (PMID:8955271) RGD PMID:8955271 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766
JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:1862038 (PMID:10932191) RGD PMID:10932191 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Gjb6 gap junction protein, beta 6 acts_upstream_of_or_within ISO MGI:2447863 (PMID:12490528) RGD PMID:12490528 NCBI chr15:31,284,561...31,294,552
Ensembl chr15:31,284,419...31,294,582
JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179191 (PMID:15190012)
UniProt
RGD
PMID:15190012 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:5315747 (PMID:22228095) RGD PMID:22228095 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1861722 (PMID:17184764) RGD PMID:17184764 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
ISO (MGI:3042765|PMID:14623956)
MGI:107928 (PMID:17184764)
RGD PMID:14623956 PMID:17184764 MGI:3042765 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:6113512 (PMID:28817564) RGD PMID:28817564 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (PMID:15958512) RGD PMID:15958512 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO MGI:3574771|MGI:3583769 (PMID:18791178) RGD PMID:18791178 NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:4458412 (PMID:23469164) RGD PMID:23469164 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Nes nestin involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:173,437,867...173,447,777
Ensembl chr 2:173,438,734...173,447,777
JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846|MGI:1857880 (PMID:10498698), (PMID:10572050) RGD PMID:10498698 PMID:10572050 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within ISO MGI:3575541 (PMID:15661756) RGD PMID:15661756 NCBI chr 1:79,010,997...79,030,714
Ensembl chr 1:79,011,745...79,030,712
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:7607067) RGD PMID:7607067 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856 (PMID:7607067) RGD PMID:7607067 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) RGD PMID:17473173 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO MGI:4129326 (PMID:21945076) RGD PMID:21945076 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (PMID:19286674) RGD PMID:19286674 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:161,590,479...161,632,149
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:5315747 (PMID:22228095) RGD PMID:22228095 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654 (PMID:10049573) RGD PMID:10049573 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:97490 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3777403 (PMID:18056999) RGD PMID:18056999 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:5297296 NCBI chr17:32,835,730...32,842,547
Ensembl chr17:32,836,777...32,842,176
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA
ISO
GO_REF:0000107
(MGI:3826935|PMID:18832390)
Ensembl
RGD
PMID:18832390 GO_REF:0000107 MGI:3826935 NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4818711|PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529 (PMID:28778798) RGD PMID:28778798 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2682066 (PMID:28778798)
Ensembl
RGD
PMID:28778798 GO_REF:0000107 NCBI chr 6:25,081,933...25,121,271
Ensembl chr 6:25,081,980...25,120,860
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:18582859) RGD PMID:18582859 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191|MGI:4415718 (PMID:18985738), (PMID:19653321) RGD PMID:18985738 PMID:19653321 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1306784 (PMID:18653562)
Ensembl
RGD
PMID:18653562 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (PMID:17584888) RGD PMID:17584888 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO MGI:98372 (PMID:17584888) RGD PMID:17584888 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:9811866) RGD PMID:9811866 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857515 (PMID:18436818)
Ensembl
RGD
PMID:18436818 GO_REF:0000107 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO MGI:1861722 (PMID:16207763), (PMID:16611695) RGD PMID:16207763 PMID:16611695 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO MGI:1353450|MGI:3043947 (PMID:16207763), (PMID:16611695) RGD PMID:16207763 PMID:16611695 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
(PMID:25406291)
GO_REF:0000107
RGD
Ensembl
PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:51,499,670...51,703,976
Ensembl chr18:51,499,737...51,703,976
JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within ISO MGI:3044226 (PMID:15056605) RGD PMID:15056605 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427
JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO
IBA
(PMID:25406291)
GO_REF:0000033
RGD
GO_Central
PMID:25406291 GO_REF:0000033 NCBI chr 5:153,312,068...153,320,266
Ensembl chr 5:153,314,711...153,320,259
JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:155,727,925...155,750,458
Ensembl chr 4:155,727,925...155,750,458
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (PMID:16207763) RGD PMID:16207763 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97857 (PMID:16207763) RGD PMID:16207763 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2159246 (PMID:10595508), (PMID:11830579)
Ensembl
RGD
PMID:10595508 PMID:11830579 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2653120 (PMID:19754878)
Ensembl
RGD
PMID:19754878 GO_REF:0000107 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4818711|PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO
ISS
(MGI:3772525|PMID:18094249)
GO_REF:0000024
RGD
UniProt
PMID:18094249 GO_REF:0000024 MGI:3772525 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:167,269,856...167,400,364
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:12692551)
(MGI:2658694|PMID:12692551)
RGD PMID:12692551 MGI:2658694 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:1344892|PMID:10469643) RGD PMID:10469643 MGI:1344892 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (PMID:26114487) RGD PMID:26114487 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856326 (PMID:14618389)
Ensembl
RGD
PMID:14618389 GO_REF:0000107 NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:12630957) RGD PMID:12630957 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427
JBrowse link
G Myh15 myosin, heavy chain 15 IEP RGD PMID:19948655 RGD:2317122 NCBI chr11:51,621,924...51,763,037
Ensembl chr11:51,622,413...51,762,971
JBrowse link
G Myom1 myomesin 1 IEP RGD PMID:12878677 RGD:633368 NCBI chr 9:110,916,156...111,039,344
Ensembl chr 9:110,915,943...111,039,344
JBrowse link
G Myom2 myomesin 2 IEP RGD PMID:12878677 RGD:633368 NCBI chr16:74,520,148...74,592,658
Ensembl chr16:74,520,157...74,592,772
JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846 (PMID:16638982), (PMID:21035439) RGD PMID:16638982 PMID:21035439 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 involved_in ISO (MGI:5585659|PMID:25030174) RGD PMID:25030174 MGI:5585659 NCBI chr 6:139,836,528...139,932,830
Ensembl chr 6:139,835,949...139,932,830
JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 involved_in ISO (PMID:23818446) RGD PMID:23818446 NCBI chr19:41,686,951...41,840,035
Ensembl chr19:41,688,617...41,839,781
JBrowse link
G Atf6 activating transcription factor 6 involved_in ISO
IEA
(PMID:26029869)
GO_REF:0000107
RGD
Ensembl
PMID:26029869 GO_REF:0000107 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within ISO MGI:98715 (PMID:22228099) RGD PMID:22228099 NCBI chr 2:119,434,760...119,474,665
Ensembl chr 2:119,434,760...119,474,396
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:16385460) RGD PMID:16385460 NCBI chr 1:79,155,873...79,158,247
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO UniProtKB:P23359 (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO UniProtKB:P23359 (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr17:26,318,121...26,469,691
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (PMID:12117821) RGD PMID:12117821 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO
ISS
IEA
(PMID:22284829)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:22284829 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921
JBrowse link
G Cpamd8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 involved_in ISO (PMID:27839872) RGD PMID:27839872 NCBI chr 4:155,332,827...155,413,098
Ensembl chr 4:155,332,827...155,413,117
JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within ISO MGI:1857595 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,482,176...66,484,638
Ensembl chr 9:66,482,176...66,509,896
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within ISO MGI:2387106 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,442,057...66,443,668
Ensembl chr 9:66,442,054...66,444,067
JBrowse link
G Cst3 cystatin C IEP RGD PMID:11431459 RGD:2306512 NCBI chr 3:136,336,923...136,340,796
Ensembl chr 3:136,336,920...136,340,822
JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (MGI:5291533|PMID:21858205) RGD PMID:21858205 MGI:5291533 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4834518 (PMID:20675713) RGD PMID:20675713 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO (PMID:9792859)
MGI:1856705|MGI:1857869 (PMID:10072431), (PMID:9635428)
RGD PMID:9635428 PMID:9792859 PMID:10072431 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxe3 forkhead box E3 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1856851 (PMID:10652278)
(PMID:27218149)
UniProt
RGD
PMID:10652278 PMID:27218149 GO_REF:0000024 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 involved_in
acts_upstream_of_or_within
ISO (PMID:29688405), (PMID:30802441)
MGI:3794302 (PMID:26234751)
(MGI:6368066|PMID:30802441)
RGD PMID:26234751 PMID:29688405 PMID:30802441 MGI:6368066 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785
JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:5,972,950...5,979,658
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1918742 (PMID:22228099) RGD PMID:22228099 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Mab21l1 mab-21 like 1 involved_in ISO (PMID:27103078), (PMID:30487245) RGD PMID:27103078 PMID:30487245 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885
JBrowse link
G Mab21l2 mab-21 like 2 involved_in ISO (PMID:24906020), (PMID:25719200) RGD PMID:24906020 PMID:25719200 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655
JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265
JBrowse link
G Meis2 Meis homeobox 2 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:97490 (PMID:12183364)
GO_Central
RGD
PMID:12183364 GO_REF:0000033 NCBI chr 3:102,742,904...102,944,833
Ensembl chr 3:102,742,900...102,949,696
JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:76,861,267...76,872,691
Ensembl chr 1:76,861,924...76,872,691
JBrowse link
G Pbx1 PBX homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594
JBrowse link
G Pbx2 PBX homeobox 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:4,151,500...4,156,425
Ensembl chr20:4,151,500...4,156,425
JBrowse link
G Pbx3 PBX homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791
JBrowse link
G Pbx4 PBX homeobox 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:19,555,089...19,590,054
Ensembl chr16:19,555,090...19,590,014
JBrowse link
G Pxdn peroxidasin involved_in ISO (MGI:6400066|PMID:31817535) RGD PMID:31817535 MGI:6400066 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345
JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:54,944,099...54,976,093
Ensembl chr17:54,943,955...54,976,043
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO
IEA
(PMID:10232633)
GO_REF:0000107
(MGI:3604178|PMID:15994349)
RGD
Ensembl
PMID:10232633 PMID:15994349 GO_REF:0000107 MGI:3604178 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Sall2 spalt-like transcription factor 2 involved_in ISO (PMID:24412933) RGD PMID:24412933 NCBI chr15:25,021,345...25,038,918
Ensembl chr15:25,021,345...25,038,918
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)
RGD PMID:20137777 MGI:4439252 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170
JBrowse link
G Sipa1l3 signal-induced proliferation-associated 1 like 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5697095|PMID:26231217)
UniProt
RGD
PMID:26231217 GO_REF:0000024 MGI:5697095 NCBI chr 1:84,618,714...84,825,956
Ensembl chr 1:84,618,719...84,703,802
JBrowse link
G Six3 SIX homeobox 3 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:18791198)
(PMID:12050133)
GO_REF:0000033
RGD
GO_Central
PMID:12050133 PMID:18791198 GO_REF:0000033 NCBI chr 6:9,039,017...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Six6 SIX homeobox 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:91,634,568...91,639,548
Ensembl chr 6:91,634,568...91,639,548
JBrowse link
G Slc39a5 solute carrier family 39 member 5 involved_in ISO (PMID:24891338) RGD PMID:24891338 NCBI chr 7:822,873...830,865
Ensembl chr 7:824,818...830,242
JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:5775676|PMID:27018474)
UniProt
Ensembl
RGD
PMID:27018474 GO_REF:0000024 GO_REF:0000107 MGI:5775676 NCBI chr 1:79,988,540...80,011,262
Ensembl chr 1:79,988,612...80,011,254
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in ISO (PMID:21194678)
(MGI:4939981|PMID:21194678)
RGD PMID:21194678 MGI:4939981 NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699
JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:18285410) RGD PMID:18285410 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:15944186)
AgBase
RGD
PMID:15944186 GO_REF:0000024 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tymp thymidine phosphorylase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874
JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 involved_in ISO (MGI:5706675|PMID:26644582) RGD PMID:26644582 MGI:5706675 NCBI chr 1:240,745,606...240,757,009
Ensembl chr 1:240,745,641...240,757,009
JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in IEA
ISO
GO_REF:0000107
(PMID:16431952)
Ensembl
RGD
PMID:16431952 GO_REF:0000107 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 9:47,448,741...47,598,134
Ensembl chr 9:47,448,736...47,598,154
JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:11456441) RGD PMID:11456441 NCBI chr17:4,482,168...4,485,153 JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:22940085 RGD:10043154 NCBI chr 5:2,840,741...3,084,935
Ensembl chr 5:2,840,765...3,084,929
JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:4437526 NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO MGI:2676366 (PMID:12915475), (PMID:21052544) RGD PMID:12915475 PMID:21052544 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 acts_upstream_of_or_within
involved_in
ISS
IBA
GO_REF:0000024
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000024 GO_REF:0000033 NCBI chr 3:131,855,890...131,908,217
Ensembl chr 3:131,852,552...131,908,156
JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO MGI:3612338 (PMID:16043865) RGD PMID:16043865 NCBI chr10:105,634,783...105,641,322
Ensembl chr10:105,634,783...105,641,322
JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT|acts_upstream_of_or_within ISO MGI:2446461 (PMID:12019334) RGD PMID:12019334 NCBI chr 5:47,445,280...47,489,929
Ensembl chr 5:47,452,150...47,489,809
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:16249514) RGD PMID:16249514 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (PMID:18367617) RGD PMID:18367617 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163
JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:202,729,610...202,952,120
Ensembl chr 2:202,729,936...202,952,112
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856158 (PMID:12648492)
Ensembl
RGD
PMID:12648492 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:3605621|MGI:3608904|MGI:4881674 (PMID:20463215) RGD PMID:20463215 NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488
JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within ISO MGI:3526850|MGI:3608904 (PMID:16267237) RGD PMID:16267237 NCBI chr 2:112,321,919...112,382,305
Ensembl chr 2:112,321,929...112,382,352
JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
GO_REF:0000024
(MGI:3652638|PMID:16574740)
UniProt
RGD
PMID:16574740 GO_REF:0000024 MGI:3652638 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO MGI:2386674 (PMID:12651948) RGD PMID:12651948 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO MGI:2655714 (PMID:12651948) RGD PMID:12651948 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:4397555 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (MGI:3614720|PMID:16465590) RGD PMID:16465590 MGI:3614720 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753 (PMID:14625556) RGD PMID:14625556 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO MGI:98354 (PMID:9030684) RGD PMID:9030684 NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:1856837 (PMID:21262862) RGD PMID:21262862 NCBI chr 5:147,774,161...147,806,291
Ensembl chr 5:147,774,160...147,806,160
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Inhba inhibin subunit beta A involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q04999 (MGI:2682175|PMID:14551263)
UniProt
RGD
PMID:14551263 GO_REF:0000024 MGI:2682175 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:2673694 (PMID:25224220) RGD PMID:25224220 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
JBrowse link
G Kmt2c lysine methyltransferase 2C acts_upstream_of_or_within ISO MGI:3693319 (PMID:17021013) RGD PMID:17021013 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:23201579), (PMID:25224220) RGD PMID:23201579 PMID:25224220 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3848564|PMID:19389375)
UniProt
RGD
PMID:19389375 GO_REF:0000024 MGI:3848564 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO
GO_REF:0000107
MGI:5645931 (PMID:29450535)
Ensembl
RGD
PMID:29450535 GO_REF:0000107 NCBI chr 7:124,639,142...124,735,027
Ensembl chr 7:124,639,142...124,658,113
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO MGI:95294 (PMID:9030684) RGD PMID:9030684 NCBI chr 6:14,533,870...14,613,348
Ensembl chr 6:14,533,360...14,611,107
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3052265|PMID:15254231)
UniProt
RGD
PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2445832|MGI:3522206 (PMID:20047077) RGD PMID:20047077 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:58,548,899...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:1313057|PMID:9811866)
UniProt
RGD
PMID:9811866 GO_REF:0000024 MGI:1313057 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
fungiform papilla development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO MGI:3582610 (PMID:17284610) RGD PMID:17284610 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
fungiform papilla formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:17128274)
Ensembl
RGD
PMID:17128274 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
fungiform papilla morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IMP RGD PMID:15581865 RGD:1580345 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:5448822|PMID:21978088) RGD PMID:21978088 MGI:5448822 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six4 SIX homeobox 4 involved_in ISO (MGI:5448822|PMID:21978088) RGD PMID:21978088 MGI:5448822 NCBI chr 6:91,802,328...91,816,002
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 8:49,708,927...49,772,876
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626
JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within ISO (PMID:19557008) RGD PMID:19557008 NCBI chr17:15,452,804...15,461,684
Ensembl chr17:15,452,813...15,461,704
JBrowse link
G Opn4 opsin 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:6359287|PMID:30936473) RGD PMID:30936473 MGI:6359287 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Slc17a6 solute carrier family 17 member 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542
JBrowse link
G Slc6a3 solute carrier family 6 member 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:29,709,443...29,750,413
Ensembl chr 1:29,709,443...29,750,413
JBrowse link
G Th tyrosine hydroxylase involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
JBrowse link
inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:2155983|MGI:2155984 (PMID:11973280), (PMID:15543141)
(PMID:19154718)
RGD PMID:11973280 PMID:15543141 PMID:19154718 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:95524 (PMID:17555714)
Ensembl
RGD
PMID:17555714 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO MGI:1856228 (PMID:12121736) RGD PMID:12121736 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Clrn2 clarin 2 acts_upstream_of_or_within ISO MGI:5792002|MGI:6458758 (PMID:31448880) RGD PMID:31448880 NCBI chr14:65,656,029...65,666,325
Ensembl chr14:65,656,550...65,666,193
JBrowse link
G Cux1 cut-like homeobox 1 acts_upstream_of_or_within ISO MGI:2388352 (PMID:11544187) RGD PMID:11544187 NCBI chr12:20,107,062...20,425,868
Ensembl chr12:20,107,311...20,425,866
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1932522|MGI:3044907 (PMID:16495313)
Ensembl
RGD
PMID:16495313 GO_REF:0000107 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of ISO (PMID:12417662) RGD PMID:12417662 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Fgf20 fibroblast growth factor 20 acts_upstream_of_or_within ISO (PMID:18524904) RGD PMID:18524904 NCBI chr16:52,030,549...52,038,201
Ensembl chr16:52,010,194...52,038,204
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of
acts_upstream_of_or_within
ISO MGI:1931521 (PMID:17117437)
MGI:1931521|MGI:88180 (PMID:17117437), (PMID:17555714), (PMID:17557302)
RGD PMID:17117437 PMID:17555714 PMID:17557302 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,040,576...2,056,874
Ensembl chr14:2,042,434...2,051,814
JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO MGI:2681910 (PMID:12405956) RGD PMID:12405956 NCBI chr14:40,004,169...40,126,571
Ensembl chr14:40,004,169...40,126,571
JBrowse link
G Gsdme gasdermin E acts_upstream_of_or_within ISO MGI:3583715 (PMID:16023581) RGD PMID:16023581 NCBI chr 4:79,258,799...79,321,129
Ensembl chr 4:79,257,804...79,320,806
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:104876|MGI:1341800 (PMID:21300049)
Ensembl
RGD
PMID:21300049 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of ISO MGI:104853|MGI:1341800 (PMID:21300049) RGD PMID:21300049 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within
involved_in
IMP
ISO
IEA
MGI:1932522|MGI:3623344 (PMID:16495313)
GO_REF:0000107
RGD
Ensembl
PMID:16495313 PMID:10887092 GO_REF:0000107, RGD:1582345 NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Kcnma1 potassium calcium-activated channel subfamily M alpha 1 acts_upstream_of_or_within ISO MGI:3050114 (PMID:15328414), (PMID:17074442) RGD PMID:15328414 PMID:17074442 NCBI chr15:302,480...1,007,675
Ensembl chr15:302,214...1,001,198
JBrowse link
G Mcoln3 mucolipin TRP cation channel 3 acts_upstream_of_or_within ISO MGI:1856230 (PMID:12403827) RGD PMID:12403827 NCBI chr 2:235,008,716...235,042,885
Ensembl chr 2:234,966,010...235,043,047
JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856555 (PMID:10525338), (PMID:5980120), (PMID:7493015)
GO_Central
RGD
PMID:5980120 PMID:7493015 PMID:10525338 GO_REF:0000033 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:12121736), (PMID:15389316) RGD PMID:11753415 PMID:12121736 PMID:15389316 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO MGI:1856394 (PMID:16481439) RGD PMID:16481439 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pls3 plastin 3 IEP RGD PMID:12378542 RGD:731234 NCBI chr  X:111,589,193...111,683,908
Ensembl chr  X:111,589,254...111,683,891
JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO MGI:1857425|MGI:2176270 (PMID:12585968), (PMID:8637595) RGD PMID:8637595 PMID:12585968 NCBI chr18:34,390,205...34,392,797
Ensembl chr18:34,390,205...34,392,797
JBrowse link
G Ush1c USH1 protein network component harmonin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2651858|MGI:2651859 (PMID:14519688)
GO_Central
RGD
PMID:14519688 GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush2a usherin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3702040 (PMID:17360538)
Ensembl
RGD
PMID:17360538 GO_REF:0000107 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
inner ear development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO MGI:3046273 (PMID:16775142) RGD PMID:16775142 NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5003050 (PMID:21636789)
Ensembl
RGD
PMID:21636789 GO_REF:0000107 NCBI chr 5:60,743,077...60,765,726
Ensembl chr 5:60,743,443...60,765,717
JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:3767172 (PMID:21146598) RGD PMID:21146598 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1856799 (PMID:11875276) RGD PMID:11875276 NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO MGI:1857136 (PMID:7605630) RGD PMID:7605630 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:21795542)
Ensembl
RGD
PMID:21795542 GO_REF:0000107 NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmper BMP-binding endothelial regulator acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 8:21,732,225...21,977,261
Ensembl chr 8:21,732,225...21,977,256
JBrowse link
G C1qb complement C1q B chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:21795542)
Ensembl
RGD
PMID:21795542 GO_REF:0000107 NCBI chr 5:149,118,843...149,124,394
Ensembl chr 5:149,118,846...149,124,407
JBrowse link
G C1qtnf5 C1q and TNF related 5 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 8:44,450,934...44,453,075
Ensembl chr 8:44,451,154...44,453,074
JBrowse link
G Ccm2 CCM2 scaffold protein acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr14:81,418,418...81,464,114
Ensembl chr14:81,418,236...81,464,116
JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO MGI:1856228|MGI:1856681|MGI:3028349 (PMID:13336002), (PMID:14759567), (PMID:8790740) RGD PMID:8790740 PMID:13336002 PMID:14759567 MGI:79257 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO MGI:1857146 (PMID:10079221) RGD PMID:10079221 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412
JBrowse link
G Cebpd CCAAT/enhancer binding protein delta acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr11:84,764,670...84,765,808
Ensembl chr11:84,764,565...84,765,829
JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:10100048) RGD PMID:10100048 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Cxcl14 C-X-C motif chemokine ligand 14 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr17:8,317,930...8,325,956
Ensembl chr17:8,317,933...8,324,839
JBrowse link
G Cys1 cystin 1 acts_upstream_of_or_within ISO MGI:1856831 (PMID:1952600) RGD PMID:1952600 NCBI chr 6:41,300,836...41,318,071
Ensembl chr 6:41,300,836...41,318,071
JBrowse link
G Cytl1 cytokine like 1 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr14:73,053,876...73,058,886
Ensembl chr14:73,053,877...73,058,886
JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1932522|MGI:3044907 (PMID:16495313) RGD PMID:16495313 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Duox2 dual oxidase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3712359 (PMID:17440044)
Ensembl
RGD
PMID:17440044 GO_REF:0000107 NCBI chr 3:109,223,809...109,247,023
Ensembl chr 3:109,226,924...109,245,902
JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO
GO_REF:0000024
(MGI:3722975|PMID:17765677)
UniProt
RGD
PMID:17765677 GO_REF:0000024 MGI:3722975 NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 IEP RGD PMID:11159937 RGD:1598918 NCBI chr 1:22,172,275...22,415,978
Ensembl chr 1:22,172,275...22,415,976
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (PMID:17117437) RGD PMID:17117437 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785
JBrowse link
G Gjb2 gap junction protein, beta 2 IEP RGD PMID:10570462 RGD:1599834 NCBI chr15:31,260,390...31,278,222
Ensembl chr15:31,260,357...31,278,177
JBrowse link
G Gjb6 gap junction protein, beta 6 IEP RGD PMID:10570462 RGD:1599834 NCBI chr15:31,284,561...31,294,552
Ensembl chr15:31,284,419...31,294,582
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:98297 (PMID:17395647) RGD PMID:17395647 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO MGI:1856991 (PMID:13336002) RGD PMID:13336002 NCBI chr14:40,004,169...40,126,571
Ensembl chr14:40,004,169...40,126,571
JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxa13 homeo box A13 acts_upstream_of_or_within ISO MGI:2152356 (PMID:18483557) RGD PMID:18483557 NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091
JBrowse link
G Hpca hippocalcin acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 5:141,455,616...141,466,252
Ensembl chr 5:141,455,613...141,463,841
JBrowse link
G Igf1 insulin-like growth factor 1 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296
JBrowse link
G Igfbp7 insulin-like growth factor binding protein 7 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr14:30,737,414...30,797,317
Ensembl chr14:30,737,164...30,797,314
JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in ISO (MGI:3848573|PMID:19389353) RGD PMID:19389353 MGI:3848573 NCBI chr 3:124,406,783...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2389447 (PMID:15385447)
(MGI:1928449|PMID:11120752), (PMID:15498462)
UniProt
RGD
PMID:11120752 PMID:15385447 PMID:15498462 GO_REF:0000024 MGI:1928449 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Lgr5 leucine rich repeat containing G protein coupled receptor 5 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr 7:51,087,059...51,221,882
Ensembl chr 7:51,088,239...51,222,446
JBrowse link
G Lhx3 LIM homeobox 3 involved_in ISO (PMID:18407919) RGD PMID:18407919 NCBI chr 3:9,026,432...9,035,122
Ensembl chr 3:9,027,425...9,034,480
JBrowse link
G Lin7a lin-7 homolog A, crumbs cell polarity complex component involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:21795542)
Ensembl
RGD
PMID:21795542 GO_REF:0000107 NCBI chr 7:42,586,704...42,742,609
Ensembl chr 7:42,586,719...42,730,550
JBrowse link
G Lrp10 LDL receptor related protein 10 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr15:27,921,335...27,927,507
Ensembl chr15:27,920,259...27,927,505
JBrowse link
G Maf MAF bZIP transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:21795542)
Ensembl
RGD
PMID:21795542 GO_REF:0000107 NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr13:42,513,762...42,560,061
Ensembl chr13:42,513,762...42,560,457
JBrowse link
G Mnda myeloid cell nuclear differentiation antigen acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr13:86,017,888...86,035,556
Ensembl chr13:86,017,892...86,034,201
JBrowse link
G Mpv17 mitochondrial inner membrane protein MPV17 involved_in ISO (MGI:3776221|PMID:16041630) RGD PMID:16041630 MGI:3776221 NCBI chr 6:25,221,668...25,236,241
Ensembl chr 6:25,222,896...25,236,244
JBrowse link
G Msx1 msh homeobox 1 involved_in ISO (MGI:65526|PMID:7914451) RGD PMID:7914451 MGI:65526 NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966
JBrowse link
G Myo3a myosin IIIA acts_upstream_of_or_within ISO MGI:4849286 (PMID:21165622) RGD PMID:21165622 NCBI chr17:84,543,465...84,759,562
Ensembl chr17:84,543,552...84,759,042
JBrowse link
G Myo6 myosin VI acts_upstream_of_or_within ISO MGI:1856555 (PMID:10525338), (PMID:5980120), (PMID:7493015) RGD PMID:5980120 PMID:7493015 PMID:10525338 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:1860092|MGI:2155423 (PMID:13336002), (PMID:14198707), (PMID:6627025), (PMID:9435277) RGD PMID:6627025 PMID:9435277 PMID:13336002 PMID:14198707 MGI:63006 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:1929186|PMID:11152640)
UniProt
RGD
PMID:11152640 GO_REF:0000024 MGI:1929186 NCBI chr 3:64,359,554...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Nherf2 NHERF family PDZ scaffold protein 2 IEP RGD PMID:16160858 RGD:1643220 NCBI chr10:13,662,461...13,672,975
Ensembl chr10:13,662,461...13,673,049
JBrowse link
G Pcdh15 protocadherin related 15 acts_upstream_of_or_within ISO MGI:1855958|MGI:2151877|MGI:2183469 (PMID:10978835), (PMID:15811708) RGD PMID:10978835 PMID:15811708 NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
JBrowse link
G Pdgfa platelet derived growth factor subunit A IEP RGD PMID:15267171 RGD:2292167 NCBI chr12:15,645,549...15,667,056
Ensembl chr12:15,645,541...15,666,497
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEP RGD PMID:15267171 RGD:2292167 NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta IEP RGD PMID:15267171 RGD:2292167 NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843
JBrowse link
G Phox2b paired-like homeobox 2b acts_upstream_of_or_within ISO MGI:1926861 (PMID:12885554) RGD PMID:12885554 NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
JBrowse link
G Pi4kb phosphatidylinositol 4-kinase beta involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:33358777)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:33358777 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:182,540,377...182,572,684
Ensembl chr 2:182,540,567...182,588,488
JBrowse link
G Plppr4 phospholipid phosphatase related 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:21795542)
Ensembl
RGD
PMID:21795542 GO_REF:0000107 NCBI chr 2:205,371,317...205,412,302
Ensembl chr 2:205,371,322...205,412,302
JBrowse link
G Pou3f4 POU class 3 homeobox 4 acts_upstream_of_or_within ISO MGI:1856631|MGI:1857990 (PMID:10587581), (PMID:15655183) RGD PMID:10587581 PMID:15655183 NCBI chr  X:75,858,646...75,859,923
Ensembl chr  X:75,858,646...75,859,923
JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO MGI:1857425 (PMID:9256502), (PMID:9735355) RGD PMID:9256502 PMID:9735355 NCBI chr18:34,390,205...34,392,797
Ensembl chr18:34,390,205...34,392,797
JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO MGI:2386336 (PMID:20186345) RGD PMID:20186345 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 involved_in ISO
IEA
(PMID:12058348)
GO_REF:0000107
RGD
Ensembl
PMID:12058348 GO_REF:0000107 NCBI chr12:35,365,436...35,424,925
Ensembl chr12:35,383,144...35,424,925
JBrowse link
G Ror1 receptor tyrosine kinase-like orphan receptor 1 involved_in ISO (MGI:5776284|PMID:27162350) RGD PMID:27162350 MGI:5776284 NCBI chr 5:114,744,311...115,088,155
Ensembl chr 5:114,744,304...115,088,155
JBrowse link
G RT1-A2 RT1 class Ia, locus A2 acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-DMa RT1 class II, locus DMa acts_upstream_of_or_within ISO (PMID:21795542) RGD PMID:21795542 NCBI chr20:4,707,028...4,710,432
Ensembl chr20:4,707,028...4,710,432
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1934261|MGI:95729 (PMID:17395647)
Ensembl
RGD
PMID:17395647 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO (MGI:3848573|PMID:19389353) RGD PMID:19389353 MGI:3848573 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Slc25a27 solute carrier family 25, member 27 IEP RGD PMID:21397696 RGD:6482846 NCBI chr 9:17,306,898...17,333,942
Ensembl chr 9:17,307,023...17,332,731
JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO
IBA
(PMID:18407919)
GO_REF:0000033
RGD
GO_Central
PMID:18407919 GO_REF:0000033 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Sparc secreted protein acidic and cysteine rich IEP RGD PMID:11335086 RGD:2300061 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396
JBrowse link
G Stox1 storkhead box 1 involved_in ISO (MGI:5635320|PMID:25677106) RGD PMID:25677106 MGI:5635320 NCBI chr20:30,598,284...30,666,371
Ensembl chr20:30,598,168...30,666,939
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IEP RGD PMID:16479080 RGD:2302094 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IEP
ISO
(MGI:894212|PMID:9217007) RGD PMID:9217007 PMID:16479080 MGI:894212, RGD:2302094 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tgfb3 transforming growth factor, beta 3 IEP RGD PMID:16479080 RGD:2302094 NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:88141 (PMID:11921339) RGD PMID:11921339 NCBI chr10:61,262,516...61,461,331
Ensembl chr10:61,262,516...61,461,505
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3043947 (PMID:23536097)
Ensembl
RGD
PMID:23536097 GO_REF:0000107 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:2155983|MGI:2155984 (PMID:15543141), (PMID:16145671) RGD PMID:15543141 PMID:16145671 NCBI chr 4:93,912,068...93,914,163
Ensembl chr 4:93,912,068...93,914,154
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (PMID:9668038) RGD PMID:9668038 NCBI chr 4:146,894,602...147,208,060
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 involved_in
NOT|involved_in
ISS
ISO
GO_REF:0000024
(MGI:2669353|PMID:12782355)
(PMID:19639346)
UniProt
RGD
PMID:12782355 PMID:19639346 GO_REF:0000024 MGI:2669353 NCBI chr 4:116,223,799...116,242,475
Ensembl chr 4:116,223,799...116,242,475
JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO (MGI:5574432|PMID:24413176) RGD PMID:24413176 MGI:5574432 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223
JBrowse link
G Bcr BCR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO MGI:107771 (PMID:11921339) RGD PMID:11921339 NCBI chr20:13,469,325...13,596,942
Ensembl chr20:13,471,668...13,597,016
JBrowse link
G Cdh23 cadherin-related 23 acts_upstream_of_or_within ISO MGI:1856229|MGI:1856681|MGI:2665714 (PMID:15925194), (PMID:7610888) RGD PMID:7610888 PMID:15925194 MGI:61210 NCBI chr20:28,240,643...28,622,490
Ensembl chr20:28,240,645...28,622,419
JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO MGI:1862019|MGI:2668337 (PMID:12842012) RGD PMID:12842012 NCBI chr 7:116,987,616...117,125,035
Ensembl chr 7:116,987,605...117,125,164
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:15300250)
MGI:3511552 (PMID:15353999)
GO_REF:0000033
RGD
GO_Central
PMID:15300250 PMID:15353999 GO_REF:0000033 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit acts_upstream_of_or_within ISO MGI:3774038 (PMID:18077337) RGD PMID:18077337 NCBI chr 1:156,487,279...156,494,277
Ensembl chr 1:156,487,279...156,491,476
JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158742 (PMID:18077337)
Ensembl
RGD
PMID:18077337 GO_REF:0000107 NCBI chr14:42,235,218...42,241,939
Ensembl chr14:42,235,226...42,242,192
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:1952599) RGD PMID:1952599 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857275 (PMID:9165353)
Ensembl
RGD
PMID:9165353 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Dlx5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101927|MGI:2180474 (PMID:12142028), (PMID:16900517)
Ensembl
RGD
PMID:12142028 PMID:16900517 GO_REF:0000107 NCBI chr 4:34,999,139...35,003,504
Ensembl chr 4:34,999,139...35,003,407
JBrowse link
G Dlx6 distal-less homeobox 6 acts_upstream_of_or_within ISO MGI:101926 (PMID:16900517) RGD PMID:16900517 NCBI chr 4:34,984,264...34,989,926
Ensembl chr 4:34,984,232...34,991,343
JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:9,515,635...9,528,071
Ensembl chr 7:9,516,429...9,527,061
JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (MGI:1859095|PMID:10839360) RGD PMID:10839360 MGI:1859095 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:1857803|MGI:2150426|MGI:97486 (PMID:10471511), (PMID:15817220), (PMID:16916509) RGD PMID:10471511 PMID:15817220 PMID:16916509 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1347464|MGI:1859647 (PMID:11062007), (PMID:16691564) RGD PMID:11062007 PMID:16691564 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:1345138 (PMID:15809037) RGD PMID:15809037 NCBI chr 1:244,584,477...244,590,578
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO MGI:2135961 (PMID:15328018) RGD PMID:15328018 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:2153351 (PMID:12194867) RGD PMID:12194867 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:10934262) RGD PMID:10934262 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO MGI:1099809|MGI:2388671 (PMID:16691564) RGD PMID:16691564 NCBI chr 6:66,674,797...66,677,611
Ensembl chr 6:66,666,587...66,678,607
JBrowse link
G Foxi1 forkhead box I1 acts_upstream_of_or_within ISO MGI:2448634 (PMID:12642503) RGD PMID:12642503 NCBI chr10:18,806,292...18,810,231
Ensembl chr10:18,806,308...18,810,231
JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within ISO MGI:98958 (PMID:18991062) RGD PMID:18991062 NCBI chr 3:65,332,274...65,365,208
Ensembl chr 3:65,332,277...65,365,208
JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within ISO MGI:108474 (PMID:16495441) RGD PMID:16495441 NCBI chr15:39,421,366...39,488,369
Ensembl chr15:39,421,355...39,488,369
JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within ISO MGI:108476 (PMID:16495441) RGD PMID:16495441 NCBI chr 7:70,055,012...70,086,781
Ensembl chr 7:70,055,068...70,086,776
JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within ISO MGI:4818492 (PMID:20652952) RGD PMID:20652952 NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO MGI:2153826|MGI:2181200 (PMID:11135239), (PMID:21553382) RGD PMID:11135239 PMID:21553382 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO MGI:1857634 (PMID:15829521), (PMID:15996652) RGD PMID:15829521 PMID:15996652 NCBI chr 9:90,509,633...90,512,212
Ensembl chr 9:90,509,633...90,512,212
JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO MGI:2449921 (PMID:12441305) RGD PMID:12441305 NCBI chr14:2,040,576...2,056,874
Ensembl chr14:2,042,434...2,051,814
JBrowse link
G Hmx2 H6 family homeobox 2 acts_upstream_of_or_within ISO MGI:107160|MGI:2154542 (PMID:11748138), (PMID:15363417) RGD PMID:11748138 PMID:15363417 NCBI chr 1:186,319,110...186,326,771
Ensembl chr 1:186,319,110...186,326,771
JBrowse link
G Hmx3 H6 family homeobox 3 acts_upstream_of_or_within ISO MGI:107159|MGI:1857577 (PMID:15363417), (PMID:9435283) RGD PMID:9435283 PMID:15363417 NCBI chr 1:186,313,237...186,315,201
Ensembl chr 1:186,313,063...186,315,201
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:3056069 (PMID:15367676) RGD PMID:15367676 NCBI chr 4:81,255,814...81,258,587
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:7,315,494...7,323,972
Ensembl chr 4:7,315,495...7,323,952
JBrowse link
G Insig2 insulin induced gene 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1916289 (PMID:16955138)
Ensembl
RGD
PMID:16955138 GO_REF:0000107 NCBI chr13:32,472,390...32,500,139
Ensembl chr13:32,473,742...32,494,923
JBrowse link
G Itga8 integrin subunit alpha 8 acts_upstream_of_or_within ISO MGI:2181699 (PMID:10742111) RGD PMID:10742111 NCBI chr17:75,304,004...75,501,510
Ensembl chr17:75,304,008...75,501,510
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA
ISO
GO_REF:0000107
MGI:2680653 (PMID:11226272)
Ensembl
RGD
PMID:11226272 GO_REF:0000107 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3618993 (PMID:16437162)
Ensembl
RGD
PMID:16437162 GO_REF:0000107 NCBI chr 5:134,275,145...134,326,992
Ensembl chr 5:134,275,934...134,326,932
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:1856419 (PMID:16325169) RGD PMID:16325169 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031
JBrowse link
G Myo15a myosin XVA acts_upstream_of_or_within ISO MGI:1857036 (PMID:11718241), (PMID:14724386) RGD PMID:11718241 PMID:14724386 NCBI chr10:45,277,619...45,335,953
Ensembl chr10:45,278,737...45,335,340
JBrowse link
G Myo6 myosin VI involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856555 (PMID:7493015)
GO_Central
RGD
PMID:7493015 GO_REF:0000033 NCBI chr 8:81,087,157...81,242,022
Ensembl chr 8:81,087,139...81,239,292
JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (PMID:11753415), (PMID:15389316), (PMID:5795329) RGD PMID:5795329 PMID:11753415 PMID:15389316 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
JBrowse link
G Neurog1 neurogenin 1 involved_in
acts_upstream_of_or_within
ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
MGI:2183171 (PMID:16145671)
RGD PMID:16145671 PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3037444 (PMID:11784868) RGD PMID:11784868 NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733
JBrowse link
G Ntn1 netrin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2137018 (PMID:17616930)
Ensembl
RGD
PMID:17616930 GO_REF:0000107 NCBI chr10:52,899,933...53,098,591
Ensembl chr10:52,899,934...53,085,326
JBrowse link
G Otop1 otopetrin 1 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1856638|MGI:2655558 (PMID:12651873)
GO_Central
RGD
PMID:12651873 GO_REF:0000033 NCBI chr14:72,505,036...72,532,497
Ensembl chr14:72,503,592...72,532,497
JBrowse link
G Otx1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2136272|MGI:97451 (PMID:10225993)
Ensembl
RGD
PMID:10225993 GO_REF:0000107 NCBI chr14:96,082,146...96,089,161
Ensembl chr14:96,082,151...96,089,086
JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:97450 (PMID:10225993) RGD PMID:10225993 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:109344|MGI:1857673 (PMID:15242798), (PMID:16916509)
UniProtKB:Q00288 (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 GO_REF:0000024 MGI:4822275 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in ISO UniProtKB:P32114 (MGI:4822275|PMID:20727173) RGD PMID:20727173 MGI:4822275 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
G Pou4f3 POU class 4 homeobox 3 acts_upstream_of_or_within ISO MGI:1857425 (PMID:12585968) RGD PMID:12585968 NCBI chr18:34,390,205...34,392,797
Ensembl chr18:34,390,205...34,392,797
JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO MGI:98218 (PMID:9729491) RGD PMID:9729491 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:75,601,706...75,670,866
JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:14,132,574...14,168,533
Ensembl chr 3:14,094,004...14,168,535
JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q acts_upstream_of_or_within ISO MGI:2679316 (PMID:14534255) RGD PMID:14534255 NCBI chr 7:42,834,455...43,016,807
Ensembl chr 7:42,837,109...43,016,917
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:18606138) RGD PMID:18606138 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:106034 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:91,802,328...91,816,002
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (PMID:19936227) RGD PMID:19936227 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Sobp sine oculis binding protein homolog involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000118
MGI:1856614 (PMID:16962269)
GO_REF:0000033
TreeGrafter
RGD
GO_Central
PMID:16962269 GO_REF:0000033 GO_REF:0000118 NCBI chr20:46,482,265...46,661,452
Ensembl chr20:46,482,765...46,663,541
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:2447995 (PMID:15846349) RGD PMID:15846349 NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO MGI:3578633|MGI:99604 (PMID:15809037) RGD PMID:15809037 NCBI chr15:82,692,291...82,697,408
Ensembl chr15:82,692,143...82,698,009
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (PMID:12913075), (PMID:15084464), (PMID:15652707), (PMID:16600992)
UniProt
RGD
PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO UniProtKB:Q60707 (MGI:6710296|PMID:33795231) RGD PMID:33795231 MGI:6710296 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:21204207)
UniProt
RGD
PMID:21204207 GO_REF:0000024 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Tmie transmembrane inner ear involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:1857053 (PMID:12140191)
GO_Central
RGD
PMID:12140191 GO_REF:0000033 NCBI chr 8:110,849,713...110,864,803
Ensembl chr 8:110,850,034...110,864,803
JBrowse link
G Ush1c USH1 protein network component harmonin involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2651858|MGI:2651859 (PMID:14519688)
GO_Central
RGD
PMID:14519688 GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
JBrowse link
G Ush1g USH1 protein network component sans acts_upstream_of_or_within ISO MGI:2450561 (PMID:12588793), (PMID:1927362) RGD PMID:1927362 PMID:12588793 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within ISO MGI:98956 (PMID:15961523) RGD PMID:15961523 NCBI chr 7:129,938,604...129,942,651
Ensembl chr 7:129,938,604...129,942,651
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:98953 (PMID:15961523) RGD PMID:15961523 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:18991062) RGD PMID:18991062 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234
JBrowse link