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ONTOLOGY REPORT - ANNOTATIONS

Term:ectoderm development
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Accession:GO:0007398 term browser browse the term
Definition:The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation.

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ectoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158342 (MGI:3051919|PMID:15136139) RGD PMID:15136139 MGI:3051919 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in		 IEA
ISO		 GO_REF:0000107
MGI:1857678 (MGI:77405|PMID:8582267)		 Ensembl
RGD		 PMID:8582267 GO_REF:0000107 MGI:77405 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO MGI:3578666 (MGI:3578082|PMID:15829518) RGD PMID:15829518 MGI:3578082 NCBI chr 3:93,333,514...93,374,454
Ensembl chr 3:93,351,619...93,371,656 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:2684328 (MGI:2682079|PMID:14608380) RGD PMID:14608380 MGI:2682079 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896 		JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 acts_upstream_of_or_within ISO MGI:5810650 (MGI:5700289|PMID:22770845) RGD PMID:22770845 MGI:5700289 NCBI chr 7:122,896,860...122,918,025
Ensembl chr 7:122,896,871...122,918,036 		JBrowse link
G Nf2 neurofibromin 2 acts_upstream_of_or_within
involved_in		 IEA
ISO		 GO_REF:0000107
MGI:1857941 (MGI:707944|PMID:9171370)		 Ensembl
RGD		 PMID:9171370 GO_REF:0000107 MGI:707944 NCBI chr14:84,996,905...85,088,547
Ensembl chr14:84,996,905...85,088,523 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 IEA
ISO		 GO_REF:0000107
MGI:1857796 (MGI:1928592|PMID:11118883)		 Ensembl
RGD		 PMID:11118883 GO_REF:0000107 MGI:1928592 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691 		JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 acts_upstream_of_or_within ISO MGI:2679766 (MGI:2679173|PMID:14560010) RGD PMID:14560010 MGI:2679173 NCBI chr 5:159,993,799...160,014,899
Ensembl chr 5:159,993,799...160,014,895 		JBrowse link
ectoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO MGI:99783 (MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISS
ISO		 GO_REF:0000024
MGI:1347476 (MGI:1344734|PMID:10498685)		 UniProt
RGD		 PMID:10498685 GO_REF:0000024 MGI:1344734 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
ectodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Erf Ets2 repressor factor acts_upstream_of_or_within ISO MGI:3719472 (MGI:3718929|PMID:17502352) RGD PMID:17502352 MGI:3718929 NCBI chr 1:82,112,449...82,120,902
Ensembl chr 1:82,112,449...82,120,902 		JBrowse link
G Itga6 integrin subunit alpha 6 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:58,442,904...58,515,124
Ensembl chr 3:58,443,101...58,515,124 		JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 1:199,495,312...199,545,738
Ensembl chr 1:199,495,298...199,623,960 		JBrowse link
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (MGI:5449815|PMID:23142660) RGD PMID:23142660 MGI:5449815 NCBI chr20:5,431,997...5,441,736
Ensembl chr20:5,432,004...5,441,706 		JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 acts_upstream_of_or_within ISO MGI:95456 (MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:5616945 NCBI chr 3:93,333,514...93,374,454
Ensembl chr 3:93,351,619...93,371,656 		JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO MGI:1335079 (MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:5616945 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994 		JBrowse link
negative regulation of ectoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sall1 spalt-like transcription factor 1 involved_in ISO (MGI:4946171|PMID:21062744) RGD PMID:21062744 MGI:4946171 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039 		JBrowse link
G Tpt1 tumor protein, translationally-controlled 1 involved_in ISO (MGI:4946164|PMID:21076177) RGD PMID:21076177 MGI:4946164 NCBI chr15:57,891,680...57,894,504
Ensembl chr15:57,891,680...57,894,504 		JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 involved_in ISO (PMID:18681827) RGD PMID:18681827 NCBI chr 9:66,305,731...66,308,550
Ensembl chr 9:66,305,731...66,308,550 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    developmental process 6853
      anatomical structure development 6313
        tissue development 2079
          ectoderm development 20
            ectoderm formation + 6
            ectodermal cell differentiation + 8
            mesectoderm development 0
            negative regulation of ectoderm development 2
            positive regulation of ectoderm development 0
            regulation of ectoderm development + 2
paths to the root