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ONTOLOGY REPORT - ANNOTATIONS

Term:pattern specification process
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Accession:GO:0007389 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
Synonyms:related_synonym: pattern biosynthesis;   pattern formation

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pattern specification process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:17849440) MGI PMID:17849440 NCBI chrNW_004624731:2,557,993...2,600,250
Ensembl chrNW_004624731:2,566,063...2,600,035 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624772:5,826,823...5,836,853
Ensembl chrNW_004624772:5,826,600...5,836,853 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:16740478) MGI
TreeGrafter		 PMID:16740478 GO_REF:0000118 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737 		JBrowse link
G Apc2 APC regulator of WNT signaling pathway 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,220,768...7,247,395
Ensembl chrNW_004624828:7,223,251...7,247,421 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15930101) MGI PMID:15930101 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
G Asph aspartate beta-hydroxylase acts_upstream_of_or_within ISO (PMID:11773073) MGI PMID:11773073 NCBI chrNW_004624744:30,190,625...30,420,501
Ensembl chrNW_004624744:30,190,513...30,418,467 		JBrowse link
G Bmp5 bone morphogenetic protein 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624850:3,324,553...3,481,439
Ensembl chrNW_004624850:3,322,782...3,481,512 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:7590254) MGI PMID:7590254 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:15716346) MGI PMID:15716346 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004 		JBrowse link
G Cdx1 caudal type homeobox 1 acts_upstream_of_or_within ISO (PMID:11959827) MGI PMID:11959827 NCBI chrNW_004624774:9,479,173...9,494,962
Ensembl chrNW_004624774:9,479,255...9,494,061 		JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (PMID:11959827) MGI PMID:11959827 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Chrd chordin involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:12397106) UniProt
MGI		 PMID:12397106 GO_REF:0000117 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843 		JBrowse link
G Cramp1 cramped chromatin regulator homolog 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624913:551,610...616,009
Ensembl chrNW_004624913:553,470...614,680 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:16399080) MGI PMID:16399080 NCBI chrNW_004624945:734,532...767,184
Ensembl chrNW_004624945:734,532...767,168 		JBrowse link
G Dchs1 dachsous cadherin-related 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:26258302) MGI PMID:26258302 NCBI chrNW_004624817:8,111,714...8,147,699
Ensembl chrNW_004624817:8,111,718...8,134,342 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO (PMID:16916509)
(PMID:16530750) 		MGI PMID:16530750 PMID:16916509 NCBI chrNW_004624744:19,782,174...19,975,496
Ensembl chrNW_004624744:19,782,790...19,977,335 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Fst follistatin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:5,799,127...5,804,802
Ensembl chrNW_004624759:5,798,067...5,805,254 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:14602680)
(PMID:8575294) 		MGI PMID:8575294 PMID:14602680 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:14602680) MGI PMID:14602680 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within ISO (PMID:14608380) MGI PMID:14608380 NCBI chrNW_004624764:8,753,343...8,783,891
Ensembl chrNW_004624764:8,753,567...8,783,162 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:12930780)
(PMID:11731457), (PMID:12724834), (PMID:15930101) 		MGI PMID:11731457 PMID:12724834 PMID:12930780 PMID:15930101 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:18302773) MGI PMID:18302773 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (PMID:18302773) MGI PMID:18302773 NCBI chrNW_004624753:375,163...394,402
Ensembl chrNW_004624753:375,279...384,379 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:7903601)
(PMID:7903600) 		MGI PMID:7903600 PMID:7903601 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750 		JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within ISO (PMID:11900462) MGI PMID:11900462 NCBI chrNW_004624739:3,461,779...3,464,543
Ensembl chrNW_004624739:3,461,800...3,464,785 		JBrowse link
G Hoxd12 homeobox D12 acts_upstream_of_or_within ISO (PMID:8900279) MGI PMID:8900279 NCBI chrNW_004624787:13,240,767...13,241,766
Ensembl chrNW_004624787:13,240,813...13,241,766 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:8900279)
(PMID:8106170)
(PMID:11850178) 		MGI PMID:8106170 PMID:8900279 PMID:11850178 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10498685)
(PMID:15930111) 		MGI PMID:10498685 PMID:15930111 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Mdga2 MAM domain containing glycosylphosphatidylinositol anchor 2 acts_upstream_of_or_within ISO (PMID:1633717) MGI PMID:1633717 NCBI chrNW_004624731:20,951,651...21,760,267
Ensembl chrNW_004624731:20,951,954...21,754,936 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:12930780) MGI PMID:12930780 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:12397106) MGI PMID:12397106 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Nrg3 neuregulin 3 acts_upstream_of_or_within ISO (PMID:10723730) MGI PMID:10723730 NCBI chrNW_004624841:4,213,089...5,285,255
Ensembl chrNW_004624841:4,219,084...5,285,240 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO (PMID:11900462) MGI PMID:11900462 NCBI chrNW_004624741:22,009,733...22,017,377
Ensembl chrNW_004624741:22,007,778...22,017,325 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within ISO (PMID:13970082) MGI PMID:13970082 NCBI chrNW_004624792:4,652,430...4,657,048
Ensembl chrNW_004624792:4,652,493...4,656,826 		JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624801:10,888,052...10,890,945
Ensembl chrNW_004624801:10,888,052...10,890,909 		JBrowse link
G Rnf111 ring finger protein 111 acts_upstream_of_or_within ISO (PMID:11298452) MGI PMID:11298452 NCBI chrNW_004624781:12,912,205...13,042,683
Ensembl chrNW_004624781:12,909,814...13,043,069 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:12231626)
(PMID:14602680) 		MGI PMID:12231626 PMID:14602680 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Shroom3 shroom family member 3 acts_upstream_of_or_within ISO (PMID:10589677) MGI PMID:10589677 NCBI chrNW_004624757:14,187,911...14,524,999
Ensembl chrNW_004624757:14,187,756...14,394,834 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15107405) MGI
TreeGrafter		 PMID:15107405 GO_REF:0000118 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Sostdc1 sclerostin domain containing 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624739:13,767,523...13,771,708
Ensembl chrNW_004624739:13,766,815...13,772,322 		JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 acts_upstream_of_or_within ISO (PMID:16452659) MGI PMID:16452659 NCBI chrNW_004624754:23,367,585...23,396,643
Ensembl chrNW_004624754:23,366,912...23,396,575 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15385444), (PMID:15652707)
(PMID:16399080) 		MGI PMID:15385444 PMID:15652707 PMID:16399080 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098 		JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624747:18,307,294...18,348,040
Ensembl chrNW_004624747:18,307,294...18,348,040 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within ISO (PMID:10804169)
(PMID:10804168) 		MGI PMID:10804168 PMID:10804169 NCBI chrNW_004624740:26,793,627...26,797,753
Ensembl chrNW_004624740:26,793,627...26,797,752 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:9389660) MGI PMID:9389660 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527 		JBrowse link
G Zic1 Zic family member 1 involved_in ISO (PMID:9070329) UniProt PMID:9070329 NCBI chrNW_004624730:24,440,717...24,444,663
Ensembl chrNW_004624730:24,440,192...24,448,421 		JBrowse link
G Zic3 Zic family member 3 acts_upstream_of_or_within ISO (PMID:11959836) MGI PMID:11959836 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aurka aurora kinase A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624790:143,818...162,065
Ensembl chrNW_004624790:147,149...161,344 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Cdx1 caudal type homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624774:9,479,173...9,494,962
Ensembl chrNW_004624774:9,479,255...9,494,061 		JBrowse link
G Cdx2 caudal type homeobox 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:15004567)
(PMID:18241853) 		MGI PMID:15004567 PMID:18241853 NCBI chrNW_004624736:18,958,081...18,960,617
Ensembl chrNW_004624736:18,958,069...18,960,617 		JBrowse link
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:18241853) MGI PMID:18241853 NCBI chrNW_004624730:74,547,226...74,550,526 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Ddit3 DNA damage inducible transcript 3 involved_in ISO (PMID:16434966) BHF-UCL PMID:16434966 NCBI chrNW_004624802:10,437,998...10,443,278 JBrowse link
G Gpc3 glypican 3 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chrNW_004624797:13,234,741...13,678,542
Ensembl chrNW_004624797:13,230,932...13,678,742 		JBrowse link
G Hey1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:15680351) MGI PMID:15680351 NCBI chrNW_004624744:11,462,865...11,466,559
Ensembl chrNW_004624744:11,462,847...11,467,870 		JBrowse link
G Hey2 hes related family bHLH transcription factor with YRPW motif 2 acts_upstream_of_or_within ISO (PMID:15680351) MGI PMID:15680351 NCBI chrNW_004624753:375,163...394,402
Ensembl chrNW_004624753:375,279...384,379 		JBrowse link
G Ldb1 LIM domain binding 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624831:1,573,058...1,584,861
Ensembl chrNW_004624831:1,571,942...1,584,775 		JBrowse link
G Lefty2 left-right determination factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:71,011...75,210 JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624889:3,174,626...3,256,555
Ensembl chrNW_004624889:3,174,739...3,244,315 		JBrowse link
G Rnf2 ring finger protein 2 acts_upstream_of_or_within ISO (PMID:12183370) MGI PMID:12183370 NCBI chrNW_004624814:8,470,818...8,516,252 JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:18321982) UniProt PMID:18321982 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:11731796) MGI PMID:11731796 NCBI chrNW_004624818:7,674,184...7,736,249
Ensembl chrNW_004624818:7,673,203...7,736,255 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:15155583) MGI PMID:15155583 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385 		JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO (PMID:19841259) UniProt PMID:19841259 NCBI chrNW_004624742:27,481,480...27,570,439
Ensembl chrNW_004624742:27,481,427...27,570,439 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cripto cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9790191) MGI PMID:9790191 NCBI chrNW_004624730:74,547,226...74,550,526 JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Tasor transcription activation suppressor involved_in ISO (PMID:28839193) UniProt PMID:28839193 NCBI chrNW_004624822:577,840...626,126
Ensembl chrNW_004624822:565,559...624,710 		JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISO (PMID:9207801) UniProt PMID:9207801 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chrNW_004624749:17,804,630...17,956,504
Ensembl chrNW_004624749:17,803,772...17,829,805 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO (PMID:10452853), (PMID:16991118) MGI PMID:10452853 PMID:16991118 NCBI chrNW_004624866:539,967...619,575
Ensembl chrNW_004624866:539,894...620,302 		JBrowse link
G Acvr2b activin A receptor type 2B involved_in
acts_upstream_of_or_within 		ISO (PMID:9916847)
(PMID:16845371)
(PMID:15542835)
(PMID:16845371), (PMID:16991118), (PMID:9242489)
(PMID:10452853), (PMID:16991118) 		HGNC-UCL
MGI		 PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 More... NCBI chrNW_004624731:2,557,993...2,600,250
Ensembl chrNW_004624731:2,566,063...2,600,035 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15652703), (PMID:15872003)
(PMID:16368932)
(PMID:17067568) 		MGI PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9374397), (PMID:9847249)
(PMID:9847249) 		MGI PMID:9374397 PMID:9847249 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737 		JBrowse link
G Arc activity regulated cytoskeleton associated protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624735:13,968,628...13,972,026
Ensembl chrNW_004624735:13,968,654...13,972,026 		JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO (PMID:17855428) MGI PMID:17855428 NCBI chrNW_004624868:2,679,590...2,683,155
Ensembl chrNW_004624868:2,679,590...2,683,079 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:15136140) MGI PMID:15136140 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO (PMID:15542835)
(PMID:10772805) 		MGI PMID:10772805 PMID:15542835 NCBI chrNW_004624765:13,849,689...13,950,839
Ensembl chrNW_004624765:13,857,062...13,947,683 		JBrowse link
G Bptf bromodomain PHD finger transcription factor acts_upstream_of_or_within ISO (PMID:18794365)
(PMID:18974875) 		MGI PMID:18794365 PMID:18974875 NCBI chrNW_004624870:489,359...626,677
Ensembl chrNW_004624870:487,955...626,683 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:15542835) MGI PMID:15542835 NCBI chrNW_004624807:7,541,335...7,545,412
Ensembl chrNW_004624807:7,540,602...7,545,521 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:19754878) MGI PMID:19754878 NCBI chrNW_004624812:107,632...203,791
Ensembl chrNW_004624812:109,405...203,519 		JBrowse link
G Cdx1 caudal type homeobox 1 acts_upstream_of_or_within ISO (PMID:11784046), (PMID:7585967) MGI PMID:7585967 PMID:11784046 NCBI chrNW_004624774:9,479,173...9,494,962
Ensembl chrNW_004624774:9,479,255...9,494,061 		JBrowse link
G Cdx2 caudal type homeobox 2 acts_upstream_of_or_within ISO (PMID:19853565) MGI PMID:19853565 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Celsr1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within ISO (PMID:19357712)
(PMID:18849982) 		MGI PMID:18849982 PMID:19357712 NCBI chrNW_004624752:3,426,317...3,537,219
Ensembl chrNW_004624752:3,425,901...3,535,400 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within ISO (PMID:9501024) MGI PMID:9501024 NCBI chrNW_004624736:18,958,081...18,960,617
Ensembl chrNW_004624736:18,958,069...18,960,617 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:16399080) MGI PMID:16399080 NCBI chrNW_004624945:734,532...767,184
Ensembl chrNW_004624945:734,532...767,168 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:12196586)
(PMID:15917450) 		MGI PMID:12196586 PMID:15917450 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO (PMID:11358868) MGI PMID:11358868 NCBI chrNW_004624735:12,384,728...12,388,234
Ensembl chrNW_004624735:12,386,281...12,387,774 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275) MGI PMID:19877275 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (PMID:23918385)
(PMID:10391213) 		MGI PMID:10391213 PMID:23918385 NCBI chrNW_004624802:12,259,971...12,269,440 JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:22841643) MGI PMID:22841643 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:22841643)
(PMID:15315762) 		MGI PMID:15315762 PMID:22841643 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Grsf1 G-rich RNA sequence binding factor 1 acts_upstream_of_or_within ISO (PMID:15857914) MGI PMID:15857914 NCBI chrNW_004624890:2,146,100...2,165,084
Ensembl chrNW_004624890:2,144,071...2,165,093 		JBrowse link
G Hhex hematopoietically expressed homeobox involved_in ISO (PMID:16936074) UniProt PMID:16936074 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 acts_upstream_of_or_within ISO (PMID:16537918) MGI PMID:16537918 NCBI chrNW_004624772:9,579,488...9,658,881 JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within ISO (PMID:16537918) MGI PMID:16537918 NCBI chrNW_004624765:19,912,623...20,105,016
Ensembl chrNW_004624765:19,923,297...20,042,840 		JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:15872003) MGI PMID:15872003 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (PMID:10529420)
(PMID:15367676) 		MGI PMID:10529420 PMID:15367676 NCBI chrNW_004624739:3,509,020...3,511,890
Ensembl chrNW_004624739:3,508,838...3,511,864 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,425,468...3,435,218
Ensembl chrNW_004624739:3,425,468...3,433,967 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:9367425) MGI PMID:9367425 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:7913519)
(PMID:9441667) 		MGI
TreeGrafter		 PMID:7913519 PMID:9441667 GO_REF:0000118 NCBI chrNW_004624739:3,453,358...3,498,061
Ensembl chrNW_004624739:3,478,406...3,498,333 		JBrowse link
G Hoxa4 homeobox A4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:7628700)
(PMID:7918106) 		MGI
TreeGrafter		 PMID:7628700 PMID:7918106 GO_REF:0000118 NCBI chrNW_004624739:3,474,868...3,477,190
Ensembl chrNW_004624739:3,474,990...3,476,486 		JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:7901120), (PMID:9603431)
(PMID:17417799)
(PMID:17626057) 		MGI
TreeGrafter		 PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000118 NCBI chrNW_004624739:3,461,779...3,464,543
Ensembl chrNW_004624739:3,461,800...3,464,785 		JBrowse link
G Hoxa6 homeobox A6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:17626057)
(PMID:7918106) 		MGI
TreeGrafter		 PMID:7918106 PMID:17626057 GO_REF:0000118 NCBI chrNW_004624739:3,455,513...3,460,130
Ensembl chrNW_004624739:3,455,606...3,460,102 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:9784603) MGI
TreeGrafter		 PMID:9784603 GO_REF:0000118 NCBI chrNW_004624739:3,448,982...3,451,985
Ensembl chrNW_004624739:3,448,199...3,452,717 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:8625797)
(PMID:17626057)
(PMID:9013929) 		MGI
TreeGrafter		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000118 NCBI chrNW_004624739:3,440,328...3,443,362
Ensembl chrNW_004624739:3,439,217...3,443,449 		JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:5,032,495...5,033,789
Ensembl chrNW_004624795:5,032,495...5,033,789 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO (PMID:9012503)
(PMID:10885747) 		MGI PMID:9012503 PMID:10885747 NCBI chrNW_004624795:5,043,110...5,045,414
Ensembl chrNW_004624795:5,042,991...5,046,030 		JBrowse link
G Hoxb3 homeobox B3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:9441667)
(PMID:10885747) 		MGI
TreeGrafter		 PMID:9441667 PMID:10885747 GO_REF:0000118 NCBI chrNW_004624795:5,050,272...5,072,614
Ensembl chrNW_004624795:5,048,920...5,068,708 		JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:9012503)
(PMID:10885747)
(PMID:7628700) 		MGI
TreeGrafter		 PMID:7628700 PMID:9012503 PMID:10885747 GO_REF:0000118 NCBI chrNW_004624795:5,074,147...5,077,714
Ensembl chrNW_004624795:5,073,119...5,078,419 		JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:10885747)
(PMID:7828847)
(PMID:17626057) 		MGI
TreeGrafter		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000118 NCBI chrNW_004624795:5,089,259...5,092,770
Ensembl chrNW_004624795:5,089,323...5,092,764 		JBrowse link
G Hoxb6 homeobox B6 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624795:5,093,911...5,102,401
Ensembl chrNW_004624795:5,093,858...5,102,868 		JBrowse link
G Hoxb7 homeobox B7 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:9784603)
(PMID:10885747) 		MGI
TreeGrafter		 PMID:9784603 PMID:10885747 GO_REF:0000118 NCBI chrNW_004624795:5,105,032...5,109,379
Ensembl chrNW_004624795:5,105,622...5,108,367 		JBrowse link
G Hoxb8 homeobox B8 acts_upstream_of_or_within ISO (PMID:10885747)
(PMID:10559485), (PMID:11311170)
(PMID:14623233)
(PMID:11311170) 		MGI PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 NCBI chrNW_004624842:4,483,367...4,484,996
Ensembl chrNW_004624842:4,483,367...4,484,996 		JBrowse link
G Hoxb9 homeobox B9 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:10885747)
(PMID:17626057)
(PMID:9013929) 		MGI
TreeGrafter		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000118 NCBI chrNW_004624795:5,118,483...5,123,294
Ensembl chrNW_004624795:5,118,493...5,123,270 		JBrowse link
G Hoxc10 homeobox C10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624904:2,040,018...2,044,881
Ensembl chrNW_004624904:2,039,754...2,045,096 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624904:2,027,792...2,030,148
Ensembl chrNW_004624904:2,027,993...2,030,148 		JBrowse link
G Hoxc13 homeobox C13 acts_upstream_of_or_within ISO (PMID:9420327) MGI PMID:9420327 NCBI chrNW_004624904:1,993,854...2,001,623
Ensembl chrNW_004624904:1,993,854...2,000,500 		JBrowse link
G Hoxc4 homeobox C4 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624904:2,104,504...2,109,729
Ensembl chrNW_004624904:2,092,055...2,109,979 		JBrowse link
G Hoxc5 homeobox C5 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624904:2,086,437...2,091,542
Ensembl chrNW_004624904:2,086,531...2,090,428 		JBrowse link
G Hoxc6 homeobox C6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:17626057) MGI
TreeGrafter		 PMID:17626057 GO_REF:0000118 NCBI chrNW_004624904:2,071,285...2,084,556
Ensembl chrNW_004624904:2,080,826...2,084,563 		JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624904:2,063,884...2,067,040
Ensembl chrNW_004624904:2,063,841...2,067,430 		JBrowse link
G Hoxc9 homeobox C9 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624904:2,054,768...2,058,556
Ensembl chrNW_004624904:2,054,386...2,058,539 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (PMID:12869760)
(PMID:10642795) 		MGI PMID:10642795 PMID:12869760 NCBI chrNW_004624787:13,256,600...13,260,664
Ensembl chrNW_004624787:13,257,387...13,262,685 		JBrowse link
G Hoxd13 homeobox D13 acts_upstream_of_or_within ISO (PMID:8106170) MGI PMID:8106170 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503 		JBrowse link
G Hoxd3 homeobox D3 involved_in
acts_upstream_of_or_within 		IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624787:13,308,406...13,312,770
Ensembl chrNW_004624787:13,292,936...13,314,622 		JBrowse link
G Hoxd4 homeobox D4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:7750651)
(PMID:7628700) 		MGI
TreeGrafter		 PMID:7628700 PMID:7750651 GO_REF:0000118 NCBI chrNW_004624787:13,290,250...13,296,315
Ensembl chrNW_004624787:13,290,703...13,296,311 		JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within ISO (PMID:11311170) MGI PMID:11311170 NCBI chrNW_004624787:13,270,798...13,273,294
Ensembl chrNW_004624787:13,270,860...13,273,749 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:10642795)
(PMID:17626057)
(PMID:8625797) 		MGI
TreeGrafter		 PMID:8625797 PMID:10642795 PMID:17626057 GO_REF:0000118 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:16109169) MGI PMID:16109169 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15930098)
(PMID:12701101) 		MGI PMID:12701101 PMID:15930098 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10220415) MGI PMID:10220415 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (PMID:16618927)
(PMID:15741318) 		MGI PMID:15741318 PMID:16618927 NCBI chrNW_004624784:13,824,507...13,912,672
Ensembl chrNW_004624784:13,824,541...13,908,077 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G LOC101699044 cytochrome P450 26A1 acts_upstream_of_or_within ISO (PMID:17067568) MGI PMID:17067568 NCBI chrNW_004624737:4,324,964...4,329,488
Ensembl chrNW_004624737:4,325,755...4,329,758 		JBrowse link
G LOC101708363 cytochrome P450 26C1 acts_upstream_of_or_within ISO (PMID:17067568) MGI PMID:17067568 NCBI chrNW_004624737:4,312,711...4,323,833
Ensembl chrNW_004624737:4,312,772...4,320,978 		JBrowse link
G LOC101723938 ALX homeobox protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:4,222,679...4,473,532
Ensembl chrNW_004624837:4,234,677...4,414,783
Ensembl chrNW_004624837:4,234,677...4,414,783 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chrNW_004624767:18,438,165...18,551,362
Ensembl chrNW_004624767:18,438,274...18,551,338 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:16126904)
(PMID:15142971)
(PMID:19795512) 		MGI PMID:15142971 PMID:16126904 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mllt3 MLLT3 super elongation complex subunit acts_upstream_of_or_within ISO (PMID:12242306) MGI PMID:12242306 NCBI chrNW_004624736:24,298,750...24,586,185 JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:15,288,417...15,294,481
Ensembl chrNW_004624733:15,288,326...15,294,568 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624844:3,493,819...3,497,814
Ensembl chrNW_004624844:3,494,677...3,497,759 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11418863), (PMID:15004567)
(PMID:11311163)
(PMID:16496285)
(PMID:15302604) 		MGI PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Nr2f2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (PMID:15829524) MGI PMID:15829524 NCBI chrNW_004624768:7,713,771...7,728,102
Ensembl chrNW_004624768:7,701,674...7,728,408 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:10,379,775...10,388,262
Ensembl chrNW_004624762:10,379,917...10,386,708 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:11412024)
(PMID:9501024)
(PMID:12652306) 		MGI PMID:9501024 PMID:11412024 PMID:12652306 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:11566859) MGI PMID:11566859 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within ISO (PMID:15741318)
(PMID:8625838) 		MGI PMID:8625838 PMID:15741318 NCBI chrNW_004624795:3,942,868...3,952,325
Ensembl chrNW_004624795:3,947,885...3,951,122 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639) BHF-UCL PMID:18519639 NCBI chrNW_004624811:3,453,218...3,862,970 JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (PMID:19412548) MGI PMID:19412548 NCBI chrNW_004624761:27,029,420...27,186,537
Ensembl chrNW_004624761:27,030,615...27,175,960 		JBrowse link
G Rarg retinoic acid receptor gamma acts_upstream_of_or_within ISO (PMID:11784046), (PMID:8388780) MGI PMID:8388780 PMID:11784046 NCBI chrNW_004624904:1,255,854...1,277,946 JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO (PMID:16624538)
(PMID:11060235), (PMID:16624538) 		MGI PMID:11060235 PMID:16624538 NCBI chrNW_004624754:23,595,612...23,599,146
Ensembl chrNW_004624754:23,594,910...23,599,434 		JBrowse link
G Scmh1 Scm polycomb group protein homolog 1 acts_upstream_of_or_within ISO (PMID:17215307) MGI PMID:17215307 NCBI chrNW_004624892:435,145...621,203
Ensembl chrNW_004624892:435,459...550,941 		JBrowse link
G Sf3b1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:15741318) MGI PMID:15741318 NCBI chrNW_004624889:2,796,351...2,835,592 JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:16467359) MGI PMID:16467359 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11118883) MGI PMID:11118883 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:22987639) MGI PMID:22987639 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15084464)
(PMID:16399080) 		MGI PMID:15084464 PMID:16399080 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (PMID:8955271) MGI PMID:8955271 NCBI chrNW_004624741:1,689,397...1,694,934
Ensembl chrNW_004624741:1,689,431...1,694,815 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within ISO (PMID:16845371) MGI PMID:16845371 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624806:5,389,464...5,463,222
Ensembl chrNW_004624806:5,389,387...5,463,240 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19334287) MGI PMID:19334287 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:15148409) MGI PMID:15148409 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:15073149), (PMID:19795512) MGI PMID:15073149 PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (PMID:16624538) MGI PMID:16624538 NCBI chrNW_004624734:3,846,753...3,875,294
Ensembl chrNW_004624734:3,846,765...3,875,294 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
G Zic3 Zic family member 3 acts_upstream_of_or_within ISO (PMID:16496285) MGI PMID:16496285 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20630950) MGI PMID:20630950 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO (PMID:17531978) MGI PMID:17531978 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Wnt6 Wnt family member 6 acts_upstream_of_or_within ISO (PMID:11948913) MGI PMID:11948913 NCBI chrNW_004624823:6,145,836...6,150,133
Ensembl chrNW_004624823:6,145,545...6,150,181 		JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 acts_upstream_of_or_within ISO (PMID:7903221) MGI PMID:7903221 NCBI chrNW_004624791:953,009...959,656
Ensembl chrNW_004624791:955,161...959,791 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:9367425) MGI PMID:9367425 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (PMID:7925021) MGI PMID:7925021 NCBI chrNW_004624919:1,337,269...1,340,607
Ensembl chrNW_004624919:1,339,228...1,340,208 		JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zic2 Zic family member 2 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chrNW_004624793:11,162,835...11,167,497
Ensembl chrNW_004624793:11,163,916...11,167,457 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 acts_upstream_of_or_within ISO (PMID:24531968) MGI PMID:24531968 NCBI chrNW_004624746:28,439,855...28,476,551
Ensembl chrNW_004624746:28,436,895...28,476,926 		JBrowse link
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:23431145) MGI PMID:23431145 NCBI chrNW_004624744:27,008,292...27,009,602
Ensembl chrNW_004624744:27,008,471...27,009,583 		JBrowse link
G Dmrta2 DMRT like family A2 acts_upstream_of_or_within ISO (PMID:23056351)
(PMID:22923088) 		MGI PMID:22923088 PMID:23056351 NCBI chrNW_004624859:2,644,569...2,649,581
Ensembl chrNW_004624859:2,645,733...2,648,559 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:15147765) MGI PMID:15147765 NCBI chrNW_004624762:685,331...702,040
Ensembl chrNW_004624762:681,308...701,998 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:15147765)
(PMID:12764040) 		MGI PMID:12764040 PMID:15147765 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within 		ISO (PMID:30186101)
(PMID:23431145) 		MGI PMID:23431145 PMID:30186101 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (PMID:17828260) MGI PMID:17828260 NCBI chrNW_004624743:12,479,427...12,488,178
Ensembl chrNW_004624743:12,478,832...12,488,458 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:30186101) Ensembl
MGI		 PMID:30186101 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO (PMID:24586484) MGI PMID:24586484 NCBI chrNW_004624730:70,801,227...70,822,188
Ensembl chrNW_004624730:70,801,207...70,822,178 		JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chrNW_004624794:12,806,299...12,816,048
Ensembl chrNW_004624794:12,806,868...12,815,582 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
detection of nodal flow term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chrNW_004624740:5,619,253...5,703,032 JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO (PMID:31887266) MGI PMID:31887266 NCBI chrNW_004624786:10,742,842...10,745,381
Ensembl chrNW_004624786:10,741,929...10,745,359 		JBrowse link
determination of bilateral symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15731404) MGI PMID:15731404 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004624746:3,412,888...3,441,710 JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chrNW_004624795:404,102...407,025
Ensembl chrNW_004624795:404,068...406,979 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:18043505) UniProt
MGI		 PMID:18043505 GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) BHF-UCL PMID:9660951 NCBI chrNW_004624736:18,958,081...18,960,617
Ensembl chrNW_004624736:18,958,069...18,960,617 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624804:1,606,182...1,620,932
Ensembl chrNW_004624804:1,608,757...1,620,938 		JBrowse link
G Grem2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:10,965,170...11,072,462
Ensembl chrNW_004624771:10,967,542...10,968,048 		JBrowse link
G Nbl1 NBL1, DAN family BMP antagonist involved_in ISO (PMID:9660951) BHF-UCL PMID:9660951 NCBI chrNW_004624764:4,771,334...4,774,462
Ensembl chrNW_004624764:4,764,903...4,775,707 		JBrowse link
determination of heart left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:15750185) MGI PMID:15750185 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in ISO (PMID:15466485) BHF-UCL PMID:15466485 NCBI chrNW_004624901:534,828...538,923
Ensembl chrNW_004624901:535,137...538,384 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:11076684) MGI PMID:11076684 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:9576835) MGI PMID:9576835 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:18043505) UniProt
MGI		 PMID:18043505 GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in ISO (PMID:26437028) UniProt PMID:26437028 NCBI chrNW_004624737:21,395,963...21,402,925
Ensembl chrNW_004624737:21,385,497...21,402,897 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO (PMID:25192045) MGI PMID:25192045 NCBI chrNW_004624828:3,207,935...3,218,795
Ensembl chrNW_004624828:3,208,153...3,218,637 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO (PMID:10349618) MGI PMID:10349618 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in ISO (PMID:15466485) BHF-UCL PMID:15466485 NCBI chrNW_004624901:534,828...538,923
Ensembl chrNW_004624901:535,137...538,384 		JBrowse link
G Nodal nodal growth differentiation factor involved_in ISO (PMID:17507406) BHF-UCL PMID:17507406 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smad2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Zic2 Zic family member 2 acts_upstream_of_or_within ISO (PMID:24585447) MGI PMID:24585447 NCBI chrNW_004624793:11,162,835...11,167,497
Ensembl chrNW_004624793:11,163,916...11,167,457 		JBrowse link
determination of left/right asymmetry in nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein axonemal heavy chain 11 acts_upstream_of_or_within ISO (PMID:18414654) MGI PMID:18414654 NCBI chrNW_004624739:8,810,127...9,136,044
Ensembl chrNW_004624739:8,811,082...9,135,815 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:11959836) UniProt PMID:11959836 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
determination of left/right symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072 		JBrowse link
G Acvr1c activin A receptor type 1C NOT|acts_upstream_of_or_within ISO (PMID:15485907) MGI PMID:15485907 NCBI chrNW_004624732:8,130,970...8,247,528
Ensembl chrNW_004624732:8,130,962...8,247,289 		JBrowse link
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within ISO (PMID:16991118) MGI PMID:16991118 NCBI chrNW_004624866:539,967...619,575
Ensembl chrNW_004624866:539,894...620,302 		JBrowse link
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:16991118)
(PMID:9242489) 		MGI PMID:9242489 PMID:16991118 NCBI chrNW_004624731:2,557,993...2,600,250
Ensembl chrNW_004624731:2,566,063...2,600,035 		JBrowse link
G Alg5 ALG5 dolichyl-phosphate beta-glucosyltransferase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624776:230,565...280,584
Ensembl chrNW_004624776:231,610...280,488 		JBrowse link
G Anks6 ankyrin repeat and sterile alpha motif domain containing 6 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624825:2,157,158...2,214,115
Ensembl chrNW_004624825:2,157,158...2,212,971 		JBrowse link
G Ap1b1 adaptor related protein complex 1 subunit beta 1 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624747:5,703,647...5,755,344
Ensembl chrNW_004624747:5,704,477...5,755,321 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667 		JBrowse link
G Bicc1 BicC family RNA binding protein 1 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624791:4,732,581...5,057,912 JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO (PMID:24947469)
(PMID:25807483) 		MGI PMID:24947469 PMID:25807483 NCBI chrNW_004624755:16,252,488...16,361,794
Ensembl chrNW_004624755:16,252,582...16,355,053 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit acts_upstream_of_or_within ISO (PMID:28182636) MGI PMID:28182636 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624837:7,054,659...7,138,840
Ensembl chrNW_004624837:7,054,813...7,138,097 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 involved_in ISO (PMID:26531781) UniProt PMID:26531781 NCBI chrNW_004624778:13,841,227...13,891,946
Ensembl chrNW_004624778:13,839,310...13,891,714 		JBrowse link
G Ciroz ciliated left-right organizer protein containing ZP-N domains acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624818:1,799,997...1,826,300
Ensembl chrNW_004624818:1,809,875...1,826,350 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15750185) UniProt PMID:15750185 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Daam2 dishevelled associated activator of morphogenesis 2 acts_upstream_of_or_within ISO (PMID:24091014) MGI PMID:24091014 NCBI chrNW_004624754:18,525,285...18,633,823
Ensembl chrNW_004624754:18,526,332...18,587,557 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 acts_upstream_of_or_within ISO (PMID:15466485) MGI PMID:15466485 NCBI chrNW_004624901:534,828...538,923
Ensembl chrNW_004624901:535,137...538,384 		JBrowse link
G Daw1 dynein assembly factor with WD repeats 1 acts_upstream_of_or_within ISO (PMID:28289722)
(PMID:25807483) 		MGI PMID:25807483 PMID:28289722 NCBI chrNW_004624843:2,058,443...2,105,646
Ensembl chrNW_004624843:2,058,330...2,108,045 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:12421714) 		MGI PMID:12421714 PMID:15755804 NCBI chrNW_004624835:5,316,620...5,468,179
Ensembl chrNW_004624835:5,316,585...5,468,156 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:12730124) MGI PMID:12730124 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:404,102...407,025
Ensembl chrNW_004624795:404,068...406,979 		JBrowse link
G Dnaaf3 dynein axonemal assembly factor 3 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624832:2,081,239...2,087,833
Ensembl chrNW_004624832:2,082,494...2,087,537 		JBrowse link
G Dnaaf4 dynein axonemal assembly factor 4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:25807483) MGI
TreeGrafter		 PMID:25807483 GO_REF:0000118 NCBI chrNW_004624731:6,215,798...6,270,210
Ensembl chrNW_004624731:6,215,737...6,241,793 		JBrowse link
G Dnah11 dynein axonemal heavy chain 11 acts_upstream_of_or_within ISO (PMID:12142464), (PMID:18022865), (PMID:22184204), (PMID:22499950)
(PMID:25807483)
(PMID:10556073)
(PMID:9353118)
(PMID:27340223) 		SYSCILIA_CCNET
MGI		 PMID:9353118 PMID:10556073 PMID:12142464 PMID:18022865 PMID:22184204 More... MGI:48750 NCBI chrNW_004624739:8,810,127...9,136,044
Ensembl chrNW_004624739:8,811,082...9,135,815 		JBrowse link
G Dnah5 dynein axonemal heavy chain 5 acts_upstream_of_or_within ISO (PMID:11788826), (PMID:17515466), (PMID:22499950)
(PMID:25807483)
(PMID:11912187)
(PMID:28289722) 		SYSCILIA_CCNET
MGI		 PMID:11788826 PMID:11912187 PMID:17515466 PMID:22499950 PMID:25807483 More... NCBI chrNW_004624751:10,799,102...11,110,180
Ensembl chrNW_004624751:10,799,892...11,050,403 		JBrowse link
G Dnai1 dynein axonemal intermediate chain 1 acts_upstream_of_or_within ISO (PMID:11231901), (PMID:17515466), (PMID:22499950)
(PMID:25807483) 		SYSCILIA_CCNET
MGI		 PMID:11231901 PMID:17515466 PMID:22499950 PMID:25807483 NCBI chrNW_004624736:38,858,918...38,922,092
Ensembl chrNW_004624736:38,859,050...38,922,097 		JBrowse link
G Dnai2 dynein axonemal intermediate chain 2 acts_upstream_of_or_within ISO (PMID:18950741) SYSCILIA_CCNET PMID:18950741 NCBI chrNW_004624801:4,252,779...4,284,432
Ensembl chrNW_004624801:4,252,814...4,280,227 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia homolog (mouse) acts_upstream_of_or_within ISO (PMID:21746835) MGI PMID:21746835 NCBI chrNW_004624831:1,087,270...1,107,197
Ensembl chrNW_004624831:1,087,292...1,107,197 		JBrowse link
G Drc1 dynein regulatory complex subunit 1 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624738:8,540,863...8,599,386
Ensembl chrNW_004624738:8,541,063...8,599,491 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (PMID:16229832), (PMID:25807483)
(PMID:15755804), (PMID:16061793) 		MGI PMID:15755804 PMID:16061793 PMID:16229832 PMID:25807483 NCBI chrNW_004624918:1,730,675...2,071,231
Ensembl chrNW_004624918:1,730,708...2,071,072 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 acts_upstream_of_or_within ISO (PMID:15371312) MGI PMID:15371312 NCBI chrNW_004624738:25,245,792...25,298,397
Ensembl chrNW_004624738:25,245,890...25,283,706 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:10411502) MGI PMID:10411502 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO (PMID:12642485) MGI PMID:12642485 NCBI chrNW_004624735:12,384,728...12,388,234
Ensembl chrNW_004624735:12,386,281...12,387,774 		JBrowse link
G Foxj1 forkhead box J1 involved_in
acts_upstream_of_or_within 		IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:6,025,756...6,030,487
Ensembl chrNW_004624801:6,025,793...6,030,486 		JBrowse link
G Gas8 growth arrest specific 8 acts_upstream_of_or_within ISO (PMID:27472056) MGI PMID:27472056 NCBI chrNW_004624746:29,776...44,825
Ensembl chrNW_004624746:29,776...44,741 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265 		JBrowse link
G Ift74 intraflagellar transport 74 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624736:31,188,963...31,308,872
Ensembl chrNW_004624736:31,188,987...31,306,815 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:10804177)
(PMID:15755804) 		MGI PMID:10804177 PMID:15755804 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:10220415) 		MGI PMID:10220415 PMID:15755804 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:21045211)
(PMID:19776033) 		MGI PMID:19776033 PMID:21045211 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742 		JBrowse link
G Mmp21 matrix metallopeptidase 21 involved_in
acts_upstream_of_or_within 		ISO (PMID:26429889), (PMID:26437028)
(PMID:26437028)
(PMID:25807483) 		UniProt
MGI		 PMID:25807483 PMID:26429889 PMID:26437028 NCBI chrNW_004624737:21,395,963...21,402,925
Ensembl chrNW_004624737:21,385,497...21,402,897 		JBrowse link
G Nek8 NIMA related kinase 8 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624786:1,303,283...1,314,188
Ensembl chrNW_004624786:1,303,308...1,314,188 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO (PMID:15329346) MGI PMID:15329346 NCBI chrNW_004624755:18,070,706...18,073,847
Ensembl chrNW_004624755:18,070,740...18,072,883 		JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO (PMID:21746835) MGI PMID:21746835 NCBI chrNW_004624826:7,077,885...7,300,398
Ensembl chrNW_004624826:7,078,140...7,258,997 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:28182636)
(PMID:12231623)
(PMID:16496285)
(PMID:15466485)
(PMID:11311163)
(PMID:12642485), (PMID:12654299) 		MGI PMID:11311163 PMID:12231623 PMID:12642485 PMID:12654299 PMID:15466485 More... NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:12730124)
(PMID:7789282) 		MGI PMID:7789282 PMID:12730124 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:12730124) MGI PMID:12730124 NCBI chrNW_004624772:15,572,350...15,726,312
Ensembl chrNW_004624772:15,571,998...15,726,426 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:17884984), (PMID:22357932)
(PMID:20350929) 		MGI PMID:17884984 PMID:20350929 PMID:22357932 NCBI chrNW_004624762:430,981...439,422 JBrowse link
G Nphp3 nephrocystin 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 acts_upstream_of_or_within ISO (PMID:23849778)
(PMID:25807483) 		SYSCILIA_CCNET
MGI		 PMID:23849778 PMID:25807483 NCBI chrNW_004624805:6,192,843...6,365,982
Ensembl chrNW_004624805:6,193,217...6,362,776 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO (PMID:25192045)
(PMID:31383820)
(PMID:25807483) 		SYSCILIA_CCNET
MGI		 PMID:25192045 PMID:25807483 PMID:31383820 NCBI chrNW_004624828:3,207,935...3,218,795
Ensembl chrNW_004624828:3,208,153...3,218,637 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624811:3,453,218...3,862,970 JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO (PMID:10809672) MGI PMID:10809672 NCBI chrNW_004624768:3,336,374...3,517,697
Ensembl chrNW_004624768:3,331,207...3,516,394 		JBrowse link
G Pierce1 piercer of microtubule wall 1 acts_upstream_of_or_within
involved_in 		IEA
ISO 		(PMID:34715025) Ensembl
UniProt		 PMID:34715025 GO_REF:0000107 NCBI chrNW_004624760:3,095,656...3,112,545
Ensembl chrNW_004624760:3,109,127...3,112,526 		JBrowse link
G Pierce2 piercer of microtubule wall 2 involved_in ISO (PMID:34715025) UniProt PMID:34715025 NCBI chrNW_004624853:138,153...139,077 JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within
involved_in 		ISO (PMID:11493526), (PMID:24091014)
(PMID:9708732)
(PMID:12397115)
(PMID:10498698)
(PMID:10572050)
(PMID:10499586) 		MGI
BHF-UCL		 PMID:9708732 PMID:10498698 PMID:10499586 PMID:10572050 PMID:11493526 More... NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624740:5,619,253...5,703,032 JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel acts_upstream_of_or_within ISO (PMID:12062060) MGI PMID:12062060 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793 		JBrowse link
G Pskh1 protein serine kinase H1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:18,450,197...18,485,102
Ensembl chrNW_004624746:18,450,195...18,468,080 		JBrowse link
G Rfx3 regulatory factor X3 acts_upstream_of_or_within ISO (PMID:15121860) MGI PMID:15121860 NCBI chrNW_004624736:8,001,078...8,301,856
Ensembl chrNW_004624736:8,003,234...8,161,150 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO (PMID:17531978) MGI PMID:17531978 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Rttn rotatin acts_upstream_of_or_within ISO (PMID:11900971) MGI PMID:11900971 NCBI chrNW_004624806:11,058,138...11,266,639
Ensembl chrNW_004624806:11,058,880...11,266,289 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10385121), (PMID:10411502), (PMID:10500184) MGI PMID:10385121 PMID:10411502 PMID:10500184 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:12421714)
(PMID:15755804) 		MGI PMID:12421714 PMID:15755804 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:16155214) MGI PMID:16155214 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16556915) MGI PMID:16556915 NCBI chrNW_004624747:386,763...395,515
Ensembl chrNW_004624747:388,904...395,098 		JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:16705179) MGI PMID:16705179 NCBI chrNW_004624770:13,506,501...13,515,388
Ensembl chrNW_004624770:13,508,409...13,516,457 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO (PMID:31887266) MGI PMID:31887266 NCBI chrNW_004624786:10,742,842...10,745,381
Ensembl chrNW_004624786:10,741,929...10,745,359 		JBrowse link
G Tmem67 transmembrane protein 67 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chrNW_004624763:1,219,779...1,281,297
Ensembl chrNW_004624763:1,219,827...1,264,071 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:16291790) MGI PMID:16291790 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:24091014) MGI PMID:24091014 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within 		ISO (PMID:9354794)
(PMID:15384171)
(PMID:16496285) 		BHF-UCL
MGI		 PMID:9354794 PMID:15384171 PMID:16496285 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004624746:3,412,888...3,441,710 JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) BHF-UCL PMID:21719175 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
determination of pancreatic left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004624746:3,412,888...3,441,710 JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aida axin interactor, dorsalization associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624835:5,206,365...5,240,534
Ensembl chrNW_004624835:5,207,011...5,240,269 		JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230 		JBrowse link
G Axin2 axin 2 ISO RGD PMID:9566905 RGD:68736 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:12923052) MGI PMID:12923052 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738) MGI PMID:18985738 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mdfi MyoD family inhibitor involved_in ISO (PMID:11238923) UniProt PMID:11238923 NCBI chrNW_004624754:17,377,369...17,389,349
Ensembl chrNW_004624754:17,375,714...17,387,919 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Senp2 SUMO specific peptidase 2 ISO RGD PMID:10944533 RGD:1299408 NCBI chrNW_004624730:71,068,112...71,100,121
Ensembl chrNW_004624730:71,068,112...71,100,225 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 involved_in ISO (PMID:9192640) UniProt PMID:9192640 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO (PMID:11830579)
(PMID:11830578) 		MGI PMID:11830578 PMID:11830579 NCBI chrNW_004624762:2,480,474...2,508,367
Ensembl chrNW_004624762:2,481,372...2,508,306 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:15218525) MGI PMID:15218525 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within ISO (PMID:28817564) MGI PMID:28817564 NCBI chrNW_004624868:4,225,779...4,248,252
Ensembl chrNW_004624868:4,241,976...4,248,196 		JBrowse link
G Cplane2 ciliogenesis and planar polarity effector complex subunit 2 acts_upstream_of_or_within ISO (PMID:29038301) MGI PMID:29038301 NCBI chrNW_004624764:2,350,780...2,358,514
Ensembl chrNW_004624764:2,350,780...2,358,495 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:18003640)
(PMID:18590716) 		MGI PMID:18003640 PMID:18590716 NCBI chrNW_004624908:1,713,590...1,720,709 JBrowse link
G Foxa1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chrNW_004624955:234,289...239,541
Ensembl chrNW_004624955:231,506...239,508 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:18590716)
(PMID:9226455)
(PMID:23383217) 		MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941)
(PMID:17504941) 		MGI PMID:17504940 PMID:17504941 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:9247260)
(PMID:20159594)
(PMID:17395647)
(PMID:28817564)
(PMID:18590716), (PMID:19286674) 		MGI PMID:9247260 PMID:17395647 PMID:18590716 PMID:19286674 PMID:20159594 More... NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:28817564)
(PMID:17395647)
(PMID:20159594) 		MGI PMID:17395647 PMID:20159594 PMID:28817564 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gorab golgin, RAB6 interacting acts_upstream_of_or_within ISO (PMID:26967474) MGI PMID:26967474 NCBI chrNW_004624826:8,230,545...8,250,519
Ensembl chrNW_004624826:8,230,740...8,250,918 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO (PMID:9226455) MGI PMID:9226455 NCBI chrNW_004624734:7,367,030...7,369,081
Ensembl chrNW_004624734:7,367,277...7,368,817 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within
involved_in 		ISO (PMID:18590716)
(PMID:21209331)
(PMID:18590716), (PMID:19286674) 		MGI
BHF-UCL		 PMID:18590716 PMID:19286674 PMID:21209331 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within ISO (PMID:21045211) MGI PMID:21045211 NCBI chrNW_004624871:50,688...63,772
Ensembl chrNW_004624871:51,122...63,742 		JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624800:1,426,773...1,431,510
Ensembl chrNW_004624800:1,426,998...1,431,631 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624764:3,853,055...3,951,182
Ensembl chrNW_004624764:3,853,055...3,947,521 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004624901:1,319,426...1,336,848
Ensembl chrNW_004624901:1,319,062...1,336,744 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta acts_upstream_of_or_within ISO (PMID:22007132) MGI PMID:22007132 NCBI chrNW_004624742:13,243,248...13,357,873
Ensembl chrNW_004624742:13,242,593...13,357,986 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:9262482) MGI PMID:9262482 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) UniProt PMID:7720556 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Rnf220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chrNW_004624906:287,817...544,123
Ensembl chrNW_004624906:313,660...544,123 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		ISO (PMID:17504941)
(PMID:21209331)
(PMID:17442700), (PMID:18590716) 		MGI
BHF-UCL		 PMID:17442700 PMID:17504941 PMID:18590716 PMID:21209331 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004624747:21,259,515...21,300,180
Ensembl chrNW_004624747:21,265,197...21,300,149 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:35353806) MGI PMID:35353806 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674), (PMID:19334287)
(PMID:19223390) 		MGI PMID:19223390 PMID:19286674 PMID:19334287 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:8299937) MGI PMID:8299937 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667 		JBrowse link
G Axin1 axin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624913:1,139,165...1,195,477
Ensembl chrNW_004624913:1,139,165...1,195,230 		JBrowse link
G Bmp1 bone morphogenetic protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:17,745,344...17,788,183
Ensembl chrNW_004624758:17,744,821...17,788,510 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:15673568) MGI PMID:15673568 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (PMID:15673568) MGI PMID:15673568 NCBI chrNW_004624757:22,697,639...23,142,209
Ensembl chrNW_004624757:22,955,666...23,142,499 		JBrowse link
G Chrd chordin acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:12810603) MGI
TreeGrafter		 PMID:12810603 GO_REF:0000118 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624835:5,316,620...5,468,179
Ensembl chrNW_004624835:5,316,585...5,468,156 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (PMID:15755804), (PMID:16061793)
(PMID:21552265)
(PMID:16229832) 		MGI PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 NCBI chrNW_004624918:1,730,675...2,071,231
Ensembl chrNW_004624918:1,730,708...2,071,072 		JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within ISO (PMID:15110048) MGI PMID:15110048 NCBI chrNW_004624756:13,842,482...13,849,003
Ensembl chrNW_004624756:13,842,164...13,849,029 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:8684466), (PMID:9362463) MGI PMID:8684466 PMID:9362463 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO (PMID:15105374) MGI PMID:15105374 NCBI chrNW_004624908:1,713,590...1,720,709 JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:15893304)
(PMID:14566948) 		MGI PMID:14566948 PMID:15893304 NCBI chrNW_004624820:3,542,767...3,547,180
Ensembl chrNW_004624820:3,543,687...3,545,147 		JBrowse link
G Gas1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940) MGI PMID:17504940 NCBI chrNW_004624809:10,414,935...10,417,838
Ensembl chrNW_004624809:10,415,592...10,416,596 		JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (PMID:16342201) MGI PMID:16342201 NCBI chrNW_004624802:10,483,279...10,494,539
Ensembl chrNW_004624802:10,483,219...10,498,609 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16342201) MGI PMID:16342201 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:12435629), (PMID:16571630)
(PMID:14723851) 		MGI PMID:12435629 PMID:14723851 PMID:16571630 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Hhip hedgehog interacting protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624853:3,649,974...3,739,344
Ensembl chrNW_004624853:3,649,967...3,735,834 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:10230789) MGI PMID:10230789 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO (PMID:10230789) MGI PMID:10230789 NCBI chrNW_004624795:5,043,110...5,045,414
Ensembl chrNW_004624795:5,042,991...5,046,030 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:21552265)
(PMID:15755804) 		MGI PMID:15755804 PMID:21552265 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:16061793)
(PMID:14603322), (PMID:15755804), (PMID:21552265) 		MGI PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15755804), (PMID:15930098) MGI PMID:15755804 PMID:15930098 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:11165475), (PMID:14566948) MGI PMID:11165475 PMID:14566948 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:18037398) MGI PMID:18037398 NCBI chrNW_004624760:1,428,496...1,435,414
Ensembl chrNW_004624760:1,429,384...1,435,414 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta involved_in ISO (PMID:10767331) UniProt PMID:10767331 NCBI chrNW_004624760:8,701,204...8,772,147
Ensembl chrNW_004624760:8,698,139...8,772,147 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:16207730)
(PMID:17119023) 		MGI PMID:16207730 PMID:17119023 NCBI chrNW_004624767:1,708,866...1,757,629 JBrowse link
G Nog noggin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:8155581) MGI PMID:8155581 NCBI chrNW_004624762:430,981...439,422 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:12652306) MGI PMID:12652306 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:12183375)
(PMID:15459176) 		MGI PMID:12183375 PMID:15459176 NCBI chrNW_004624733:41,852,638...41,856,493
Ensembl chrNW_004624733:41,850,474...41,856,459 		JBrowse link
G Ptch1 patched 1 acts_upstream_of_or_within ISO (PMID:15576403) MGI PMID:15576403 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:21552265) MGI PMID:21552265 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:16571630)
(PMID:15755804) 		MGI PMID:15755804 PMID:16571630 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO (PMID:14597661) MGI PMID:14597661 NCBI chrNW_004624739:9,792,963...9,795,697
Ensembl chrNW_004624739:9,793,290...9,795,684 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within ISO (PMID:15901664) MGI PMID:15901664 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132 		JBrowse link
G Tgif1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:17082251) MGI PMID:17082251 NCBI chrNW_004624770:13,506,501...13,515,388
Ensembl chrNW_004624770:13,508,409...13,516,457 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO (PMID:7885472), (PMID:9362463) MGI PMID:7885472 PMID:9362463 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843 		JBrowse link
G Chrdl1 chordin like 1 involved_in ISO (PMID:11118896), (PMID:11401399) MGI PMID:11118896 PMID:11401399 NCBI chrNW_004624803:5,011,132...5,144,899
Ensembl chrNW_004624803:5,010,746...5,144,989 		JBrowse link
G Cited1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chrNW_004624903:2,596,049...2,601,315 JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:12121999) BHF-UCL PMID:12121999 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228 		JBrowse link
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:16826533) BHF-UCL PMID:16826533 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:16314491) MGI PMID:16314491 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Foxh1 forkhead box H1 acts_upstream_of_or_within ISO (PMID:15363409) MGI PMID:15363409 NCBI chrNW_004624735:12,384,728...12,388,234
Ensembl chrNW_004624735:12,386,281...12,387,774 		JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136932) MGI PMID:9136932 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318 		JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimap3 ciliary microtubule associated protein 3 acts_upstream_of_or_within ISO (PMID:20643351) MGI PMID:20643351 NCBI chrNW_004624772:7,080,535...7,096,603
Ensembl chrNW_004624772:7,091,047...7,097,970 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) CACAO PMID:21209331 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chrNW_004624825:701,335...866,598
Ensembl chrNW_004624825:702,347...866,353 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in ISS CAFA GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210 		JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:17234970) BHF-UCL PMID:17234970 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) MGI PMID:10049573 NCBI chrNW_004624741:23,658,214...23,743,227
Ensembl chrNW_004624741:23,658,004...23,737,742 		JBrowse link
G Disp1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:12372301) MGI PMID:12372301 NCBI chrNW_004624835:5,316,620...5,468,179
Ensembl chrNW_004624835:5,316,585...5,468,156 		JBrowse link
G Dop1b DOP1 leucine zipper like protein B involved_in ISO (PMID:10950924) UniProt PMID:10950924 NCBI chrNW_004624745:27,196,417...27,292,290
Ensembl chrNW_004624745:27,197,068...27,265,087 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624891:1,394,948...1,407,898
Ensembl chrNW_004624891:1,394,852...1,407,959 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in ISO (PMID:10655590) UniProt PMID:10655590 NCBI chrNW_004624765:3,612,781...4,742,219
Ensembl chrNW_004624765:3,613,379...4,734,585 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16618415) MGI PMID:16618415 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Nanog Nanog homeobox involved_in ISO (PMID:15108323) HGNC-UCL PMID:15108323 NCBI chrNW_004624860:5,026,203...5,037,219 JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:15550757) MGI PMID:15550757 NCBI chrNW_004624762:430,981...439,422 JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624889:3,174,626...3,256,555
Ensembl chrNW_004624889:3,174,739...3,244,315 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:9,868,707...9,879,909 JBrowse link
G Ripply3 ripply transcriptional repressor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624745:26,636,307...26,658,373 JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO (PMID:16751105) MGI PMID:16751105 NCBI chrNW_004624889:1,321,323...1,466,368
Ensembl chrNW_004624889:1,321,345...1,466,319 		JBrowse link
G Sim2 SIM bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:12024028) MGI PMID:12024028 NCBI chrNW_004624745:26,851,423...26,891,590
Ensembl chrNW_004624745:26,852,980...26,891,176 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:17984226) MGI PMID:17984226 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
G Zbtb16 zinc finger and BTB domain containing 16 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:9,545,529...9,726,960
Ensembl chrNW_004624784:9,546,509...9,726,960 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:16397896) MGI PMID:16397896 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
epithelial cilium movement involved in determination of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 acts_upstream_of_or_within ISO (PMID:33139725) MGI PMID:33139725 NCBI chrNW_004624794:1,344,107...1,380,069
Ensembl chrNW_004624794:1,352,445...1,379,961 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 acts_upstream_of_or_within ISO (PMID:33347437) MGI PMID:33347437 NCBI chrNW_004624778:13,841,227...13,891,946
Ensembl chrNW_004624778:13,839,310...13,891,714 		JBrowse link
G Dnaaf11 dynein axonemal assembly factor 11 involved_in
acts_upstream_of_or_within 		ISO (PMID:23122589)
(PMID:27353389) 		BHF-UCL
MGI		 PMID:23122589 PMID:27353389 NCBI chrNW_004624735:23,269,253...23,355,832
Ensembl chrNW_004624735:23,269,414...23,355,968 		JBrowse link
G Dnah11 dynein axonemal heavy chain 11 acts_upstream_of_or_within ISO (PMID:10549278), (PMID:22102620) MGI PMID:10549278 PMID:22102620 NCBI chrNW_004624739:8,810,127...9,136,044
Ensembl chrNW_004624739:8,811,082...9,135,815 		JBrowse link
G Invs inversin acts_upstream_of_or_within ISO (PMID:10549278) MGI PMID:10549278 NCBI chrNW_004624825:701,335...866,598
Ensembl chrNW_004624825:702,347...866,353 		JBrowse link
G Megf8 multiple EGF like domains 8 NOT|acts_upstream_of_or_within ISO (PMID:18043505) MGI PMID:18043505 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 acts_upstream_of_or_within ISO (PMID:31383820) MGI PMID:31383820 NCBI chrNW_004624828:3,207,935...3,218,795
Ensembl chrNW_004624828:3,208,153...3,218,637 		JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 involved_in
acts_upstream_of_or_within 		ISO (PMID:27486780) GO_Central
MGI		 PMID:27486780 NCBI chrNW_004624795:1,861,985...1,876,766
Ensembl chrNW_004624795:1,861,991...1,876,737 		JBrowse link
G Ofd1 OFD1 centriole and centriolar satellite protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624882:376,447...417,066
Ensembl chrNW_004624882:376,556...416,509 		JBrowse link
G Rfx3 regulatory factor X3 involved_in ISO (PMID:15121860) UniProt PMID:15121860 NCBI chrNW_004624736:8,001,078...8,301,856
Ensembl chrNW_004624736:8,003,234...8,161,150 		JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ttc8 tetratricopeptide repeat domain 8 involved_in ISO (PMID:14520415) BHF-UCL PMID:14520415 NCBI chrNW_004624734:13,437,234...13,497,269
Ensembl chrNW_004624734:13,437,221...13,497,510 		JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx4 iroquois homeobox 4 ISO RGD PMID:10882515 RGD:1582291 NCBI chrNW_004624751:913,127...916,583
Ensembl chrNW_004624751:913,691...916,842 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:30,852,463...30,896,443
Ensembl chrNW_004624743:30,890,359...30,895,682 		JBrowse link
establishment of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799 		JBrowse link
G Cfap45 cilia and flagella associated protein 45 involved_in ISO (PMID:33139725) GO_Central PMID:33139725 NCBI chrNW_004624794:1,344,107...1,380,069
Ensembl chrNW_004624794:1,352,445...1,379,961 		JBrowse link
G Cfap52 cilia and flagella associated protein 52 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624786:11,992,545...12,050,112
Ensembl chrNW_004624786:11,992,553...12,050,220 		JBrowse link
G Ciroz ciliated left-right organizer protein containing ZP-N domains involved_in ISO (PMID:39753129) UniProt PMID:39753129 NCBI chrNW_004624818:1,799,997...1,826,300
Ensembl chrNW_004624818:1,809,875...1,826,350 		JBrowse link
G Dnaaf2 dynein axonemal assembly factor 2 acts_upstream_of_or_within ISO (PMID:31107948)
(PMID:23525783) 		MGI PMID:23525783 PMID:31107948 NCBI chrNW_004624731:19,069,162...19,077,501
Ensembl chrNW_004624731:19,069,203...19,077,505 		JBrowse link
G Enkur enkurin, TRPC channel interacting protein involved_in
acts_upstream_of_or_within 		ISO (PMID:29257953) GO_Central
MGI		 PMID:29257953 NCBI chrNW_004624796:3,961,148...3,980,197
Ensembl chrNW_004624796:3,961,538...3,980,952 		JBrowse link
G Pierce1 piercer of microtubule wall 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:3,095,656...3,112,545
Ensembl chrNW_004624760:3,109,127...3,112,526 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16720875) MGI PMID:16720875 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 FEZ family zinc finger 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624783:13,715,987...13,719,287
Ensembl chrNW_004624783:13,713,422...13,718,604 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16971467) MGI PMID:16971467 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:18094027) MGI PMID:18094027 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10625551) MGI PMID:10625551 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:11060228), (PMID:11124115), (PMID:18701439) MGI PMID:11060228 PMID:11124115 PMID:18701439 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:10393115), (PMID:11163262), (PMID:11830575) MGI PMID:10393115 PMID:11163262 PMID:11830575 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) UniProt PMID:18791198 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624787:3,685,700...3,745,018
Ensembl chrNW_004624787:3,686,088...3,744,895 		JBrowse link
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624889:3,174,626...3,256,555
Ensembl chrNW_004624889:3,174,739...3,244,315 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:24528677) MGI PMID:24528677 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15164427) UniProt PMID:15164427 NCBI chrNW_004624772:8,305,042...8,319,882
Ensembl chrNW_004624772:8,304,708...8,319,349 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (PMID:15164427) UniProt PMID:15164427 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:19,035,478...19,047,633
Ensembl chrNW_004624758:19,035,338...19,047,871 		JBrowse link
heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:26295701) MGI PMID:26295701 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804 		JBrowse link
heart induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:20702560) BHF-UCL PMID:20702560 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982 		JBrowse link
G Gata5 GATA binding protein 5 involved_in ISO (PMID:21633169) BHF-UCL PMID:21633169 NCBI chrNW_004624741:28,310,679...28,322,209
Ensembl chrNW_004624741:28,310,201...28,321,095 		JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004624754:24,758,055...24,764,723 JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO (PMID:25691540) BHF-UCL PMID:25691540 NCBI chrNW_004624874:4,234,640...5,359,333
Ensembl chrNW_004624874:4,949,538...5,357,690 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (PMID:25691540) BHF-UCL PMID:25691540 NCBI chrNW_004624745:800,963...2,121,445
Ensembl chrNW_004624745:804,797...1,390,551 		JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplnr apelin receptor involved_in ISO (PMID:23603510) BHF-UCL PMID:23603510 NCBI chrNW_004624864:3,308,548...3,311,431
Ensembl chrNW_004624864:3,308,794...3,309,939 		JBrowse link
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667 		JBrowse link
G Asb2 ankyrin repeat and SOCS box containing 2 involved_in ISO (PMID:32179481) UniProt PMID:32179481 NCBI chrNW_004624734:10,317,932...10,352,300
Ensembl chrNW_004624734:10,316,299...10,352,515 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004 		JBrowse link
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799 		JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:15750185) MGI PMID:15750185 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chrNW_004624824:1,299,426...1,352,019
Ensembl chrNW_004624824:1,300,137...1,351,129 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944400), (PMID:19944405) BHF-UCL PMID:19944400 PMID:19944405 NCBI chrNW_004624746:3,412,888...3,441,710 JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chrNW_004624795:404,102...407,025
Ensembl chrNW_004624795:404,068...406,979 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in ISO (PMID:22841628) BHF-UCL PMID:22841628 NCBI chrNW_004624818:8,267,111...8,283,755
Ensembl chrNW_004624818:8,267,128...8,278,725 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO (PMID:22841628) BHF-UCL PMID:22841628 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301 		JBrowse link
G Eng endoglin involved_in ISO (PMID:10348742), (PMID:19703439) BHF-UCL PMID:10348742 PMID:19703439 NCBI chrNW_004624760:7,703,979...7,735,636
Ensembl chrNW_004624760:7,703,820...7,734,457 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:10411502) MGI PMID:10411502 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) BHF-UCL PMID:17286298 NCBI chrNW_004624817:4,830,164...4,850,565
Ensembl chrNW_004624817:4,820,163...4,851,339 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO (PMID:15363409) BHF-UCL PMID:15363409 NCBI chrNW_004624735:12,384,728...12,388,234
Ensembl chrNW_004624735:12,386,281...12,387,774 		JBrowse link
G Gata4 GATA binding protein 4 involved_in ISO (PMID:15310850) BHF-UCL PMID:15310850 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318 		JBrowse link
G Gja1 gap junction protein alpha 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624798:9,358,996...9,364,413
Ensembl chrNW_004624798:9,359,004...9,364,313 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO (PMID:9500551) MGI PMID:9500551 NCBI chrNW_004624733:34,731,671...34,733,759
Ensembl chrNW_004624733:34,731,671...34,733,759 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:9171826) MGI PMID:9171826 NCBI chrNW_004624769:5,035,669...5,038,333
Ensembl chrNW_004624769:5,033,932...5,038,343 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:14659802) MGI PMID:14659802 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042) MGI PMID:18930042 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933 		JBrowse link
G Ift52 intraflagellar transport 52 acts_upstream_of_or_within ISO (PMID:15930098) MGI PMID:15930098 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO (PMID:17027958) MGI PMID:17027958 NCBI chrNW_004624731:41,321,574...41,390,133
Ensembl chrNW_004624731:41,322,033...41,388,570 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769 		JBrowse link
G Kdm2a lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chrNW_004624767:19,247,009...19,365,520
Ensembl chrNW_004624767:19,248,430...19,364,793 		JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10330409) MGI PMID:10330409 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Lbx1 ladybird homeobox 1 acts_upstream_of_or_within ISO (PMID:12522123) MGI PMID:12522123 NCBI chrNW_004624831:777,873...780,481
Ensembl chrNW_004624831:778,866...780,365 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:16680724) UniProt PMID:16680724 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004624770:9,936,202...10,051,018
Ensembl chrNW_004624770:9,941,706...10,051,024 		JBrowse link
G Nkx2-5 NK2 homeobox 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:16,881,189...16,884,245
Ensembl chrNW_004624733:16,881,191...16,884,210 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:16496285) MGI PMID:16496285 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Notch2 notch receptor 2 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624772:15,572,350...15,726,312
Ensembl chrNW_004624772:15,571,998...15,726,426 		JBrowse link
G Noto notochord homeobox acts_upstream_of_or_within ISO (PMID:17884984) MGI PMID:17884984 NCBI chrNW_004624762:430,981...439,422 JBrowse link
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931), (PMID:20007846) BHF-UCL PMID:18371931 PMID:20007846 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649 		JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:17573777) MGI PMID:17573777 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21719175) BHF-UCL PMID:21719175 NCBI chrNW_004624872:4,539,965...4,592,004
Ensembl chrNW_004624872:4,539,847...4,594,793 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in 		ISO (PMID:10411502), (PMID:10500184)
(PMID:11517919) 		MGI
BHF-UCL		 PMID:10411502 PMID:10500184 PMID:11517919 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in 		ISO (PMID:17610846)
(PMID:17610846), (PMID:17655922) 		MGI
BHF-UCL		 PMID:17610846 PMID:17655922 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:15929941) MGI PMID:15929941 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:16155214) MGI PMID:16155214 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
G Tbx20 T-box transcription factor 20 acts_upstream_of_or_within
involved_in 		ISO (PMID:15901664)
(PMID:15843409)
(PMID:15843407) 		MGI
BHF-UCL		 PMID:15843407 PMID:15843409 PMID:15901664 NCBI chrNW_004624740:25,645,526...25,698,235
Ensembl chrNW_004624740:25,645,895...25,697,132 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:17460765)
(PMID:18723448) 		MGI PMID:17460765 PMID:18723448 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in ISO (PMID:17050629) BHF-UCL PMID:17050629 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:16291790) MGI PMID:16291790 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Zic3 Zic family member 3 involved_in
acts_upstream_of_or_within 		ISO (PMID:9354794)
(PMID:16496285)
(PMID:15384171) 		BHF-UCL
MGI		 PMID:9354794 PMID:15384171 PMID:16496285 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042)
(PMID:22554696) 		MGI PMID:18930042 PMID:22554696 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933 		JBrowse link
G Ift25 intraflagellar transport 25 acts_upstream_of_or_within ISO (PMID:22595669) MGI PMID:22595669 NCBI chrNW_004624934:533,112...567,896
Ensembl chrNW_004624934:543,847...568,122 		JBrowse link
G Mns1 meiosis specific nuclear structural 1 acts_upstream_of_or_within ISO (PMID:22396656) MGI PMID:22396656 NCBI chrNW_004624781:15,292,047...15,337,466
Ensembl chrNW_004624781:15,291,416...15,328,173 		JBrowse link
G Notch1 notch receptor 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Notch2 notch receptor 2 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chrNW_004624772:15,572,350...15,726,312
Ensembl chrNW_004624772:15,571,998...15,726,426 		JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chrNW_004624740:5,619,253...5,703,032 JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:9636176) MGI PMID:9636176 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17127413) MGI PMID:17127413 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624753:14,630,842...14,633,245
Ensembl chrNW_004624753:14,630,827...14,632,536 		JBrowse link
G Cluap1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chrNW_004624824:1,299,426...1,352,019
Ensembl chrNW_004624824:1,300,137...1,351,129 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 NOT|acts_upstream_of_or_within ISO (PMID:21203428) MGI PMID:21203428 NCBI chrNW_004624736:5,721,984...5,730,558
Ensembl chrNW_004624736:5,722,404...5,730,633 		JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944400) BHF-UCL PMID:19944400 NCBI chrNW_004624746:3,412,888...3,441,710 JBrowse link
G Dpcd deleted in primary ciliary dyskinesia homolog (mouse) acts_upstream_of_or_within ISO (PMID:20080492) MGI PMID:20080492 NCBI chrNW_004624831:1,087,270...1,107,197
Ensembl chrNW_004624831:1,087,292...1,107,197 		JBrowse link
G Foxj1 forkhead box J1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:6,025,756...6,030,487
Ensembl chrNW_004624801:6,025,793...6,030,486 		JBrowse link
G Ift57 intraflagellar transport 57 acts_upstream_of_or_within ISO (PMID:17027958) MGI PMID:17027958 NCBI chrNW_004624731:41,321,574...41,390,133
Ensembl chrNW_004624731:41,322,033...41,388,570 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within 		ISS
ISO 		(PMID:32203821), (PMID:32966817) CAFA
MGI		 PMID:32203821 PMID:32966817 GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091 		JBrowse link
G Mosmo modulator of smoothened acts_upstream_of_or_within ISO (PMID:34486668) MGI PMID:34486668 NCBI chrNW_004624782:7,455,770...7,513,931 JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO (PMID:20080492) MGI PMID:20080492 NCBI chrNW_004624826:7,077,885...7,300,398
Ensembl chrNW_004624826:7,078,140...7,258,997 		JBrowse link
G Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:20080492) MGI PMID:20080492 NCBI chrNW_004624740:5,619,253...5,703,032 JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:16801545) MGI PMID:16801545 NCBI chrNW_004624790:5,509,541...5,515,240
Ensembl chrNW_004624790:5,509,311...5,515,266 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:23184148)
(PMID:23303524) 		MGI PMID:23184148 PMID:23303524 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO (PMID:19686689) MGI PMID:19686689 NCBI chrNW_004624827:2,045,733...2,088,284
Ensembl chrNW_004624827:2,045,595...2,089,442 		JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO (PMID:19686689) MGI PMID:19686689 NCBI chrNW_004624772:8,305,042...8,319,882
Ensembl chrNW_004624772:8,304,708...8,319,349 		JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16720875) MGI PMID:16720875 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16720875) MGI PMID:16720875 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:16720875) MGI PMID:16720875 NCBI chrNW_004624823:2,870,762...2,963,134
Ensembl chrNW_004624823:2,871,162...2,961,944 		JBrowse link
metanephric capsule specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISO (PMID:15634693) UniProt PMID:15634693 NCBI chrNW_004624905:2,487,981...2,490,068 JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:15607945) MGI PMID:15607945 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chrNW_004624847:1,878,946...1,881,794
Ensembl chrNW_004624847:1,879,007...1,881,669 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008), (PMID:19795512) MGI PMID:11029008 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 involved_in ISO (PMID:15857913) UniProt PMID:15857913 NCBI chrNW_004624934:161,323...313,621
Ensembl chrNW_004624934:161,054...311,937 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chrNW_004624847:1,878,946...1,881,794
Ensembl chrNW_004624847:1,879,007...1,881,669 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:11500373) MGI PMID:11500373 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Hes3 hes family bHLH transcription factor 3 acts_upstream_of_or_within ISO (PMID:11522634) MGI PMID:11522634 NCBI chrNW_004624818:5,156,428...5,160,858
Ensembl chrNW_004624818:5,153,717...5,161,026 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) BHF-UCL PMID:21220025 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
negative regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddit3 DNA damage inducible transcript 3 involved_in ISO (PMID:16434966) BHF-UCL PMID:16434966 NCBI chrNW_004624802:10,437,998...10,443,278 JBrowse link
G Sostdc1 sclerostin domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624739:13,767,523...13,771,708
Ensembl chrNW_004624739:13,766,815...13,772,322 		JBrowse link
negative regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in ISO (PMID:23806618) UniProt PMID:23806618 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183 		JBrowse link
G Ofd1 OFD1 centriole and centriolar satellite protein involved_in ISO (PMID:23806618) UniProt PMID:23806618 NCBI chrNW_004624882:376,447...417,066
Ensembl chrNW_004624882:376,556...416,509 		JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 involved_in ISO (PMID:15042700) BHF-UCL PMID:15042700 NCBI chrNW_004624871:2,428,757...2,437,447
Ensembl chrNW_004624871:2,429,407...2,437,447 		JBrowse link
negative regulation of Notch signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in ISO (PMID:23072809) UniProt PMID:23072809 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr161 G protein-coupled receptor 161 involved_in ISO (PMID:23332756) UniProt PMID:23332756 NCBI chrNW_004624826:6,089,127...6,135,076
Ensembl chrNW_004624826:6,089,127...6,134,127 		JBrowse link
neural plate anterior/posterior regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr2 cadherin EGF LAG seven-pass G-type receptor 2 involved_in ISO (PMID:12755329) BHF-UCL PMID:12755329 NCBI chrNW_004624772:4,990,185...5,014,008
Ensembl chrNW_004624772:4,990,178...5,014,119 		JBrowse link
G Nog noggin involved_in ISO (PMID:8582276) BHF-UCL PMID:8582276 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Tbx18 T-box transcription factor 18 involved_in ISO (PMID:17584735) BHF-UCL PMID:17584735 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385 		JBrowse link
neural plate axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C2cd3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within ISO (PMID:19004860) MGI PMID:19004860 NCBI chrNW_004624817:2,880,775...3,060,399
Ensembl chrNW_004624817:2,880,976...3,042,004 		JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
neural plate mediolateral regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
neural plate pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ARF like GTPase 13B involved_in ISO (PMID:23014696) UniProt PMID:23014696 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667 		JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1 like acts_upstream_of_or_within ISO (PMID:29487109) MGI PMID:29487109 NCBI chrNW_004624730:14,568,625...14,619,673
Ensembl chrNW_004624730:14,568,382...14,619,272 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO (PMID:24009529) MGI PMID:24009529 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Ptch1 patched 1 involved_in ISO (PMID:8681379) BHF-UCL PMID:8681379 NCBI chrNW_004624753:16,929,503...16,995,255
Ensembl chrNW_004624753:16,935,251...16,995,389 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17553904) MGI PMID:17553904 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:29487109) MGI PMID:29487109 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134 		JBrowse link
G Tmem107 transmembrane protein 107 involved_in ISO (PMID:22698544) UniProt PMID:22698544 NCBI chrNW_004624786:10,742,842...10,745,381
Ensembl chrNW_004624786:10,741,929...10,745,359 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO (PMID:21945076) MGI PMID:21945076 NCBI chrNW_004624847:3,424,388...3,469,708
Ensembl chrNW_004624847:3,424,365...3,472,075 		JBrowse link
oocyte axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr77 WD repeat domain 77 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:7,158,530...7,167,034
Ensembl chrNW_004624772:7,158,530...7,167,042 		JBrowse link
organ induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9806931) MGI PMID:9806931 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Fgf1 fibroblast growth factor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624774:1,779,168...1,867,321
Ensembl chrNW_004624774:1,779,170...1,867,300 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:15576401) MGI PMID:15576401 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:12810586)
(PMID:15741321) 		MGI PMID:12810586 PMID:15741321 NCBI chrNW_004624767:17,353,989...17,360,857
Ensembl chrNW_004624767:17,353,989...17,360,705 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:15741321) MGI PMID:15741321 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:15576401) MGI PMID:15576401 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (PMID:15576401) MGI PMID:15576401 NCBI chrNW_004624733:12,964,893...12,979,198
Ensembl chrNW_004624733:12,964,746...12,976,732 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Gdnf glial cell derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:15691764) MGI PMID:15691764 NCBI chrNW_004624759:17,263,570...17,290,046
Ensembl chrNW_004624759:17,263,969...17,287,723 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:12050119) MGI PMID:12050119 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO (PMID:12050119) MGI PMID:12050119 NCBI chrNW_004624904:2,027,792...2,030,148
Ensembl chrNW_004624904:2,027,993...2,030,148 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:40,453,445...40,457,551
Ensembl chrNW_004624734:40,453,420...40,459,671 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 acts_upstream_of_or_within ISO (PMID:15691764) MGI PMID:15691764 NCBI chrNW_004624777:3,728,984...3,735,373
Ensembl chrNW_004624777:3,731,299...3,735,373 		JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family member 6 involved_in ISO (PMID:21397848) UniProt PMID:21397848 NCBI chrNW_004624849:4,202,398...4,245,217
Ensembl chrNW_004624849:4,224,986...4,227,755 		JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624771:2,711,791...2,818,031 JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:3,302,796...3,376,971
Ensembl chrNW_004624825:3,303,041...3,386,606 		JBrowse link
G Tdrkh tudor and KH domain containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:19,447,092...19,463,796
Ensembl chrNW_004624772:19,444,049...19,463,788 		JBrowse link
pattern specification involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxd1 forkhead box D1 involved_in ISO (PMID:15634693) UniProt PMID:15634693 NCBI chrNW_004624905:2,487,981...2,490,068 JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:18835385) UniProt PMID:18835385 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
polarity specification of anterior/posterior axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule involved_in ISO (PMID:11044396) Roslin_Institute PMID:11044396 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:30,852,463...30,896,443
Ensembl chrNW_004624743:30,890,359...30,895,682 		JBrowse link
polarity specification of proximal/distal axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:14511481) MGI PMID:14511481 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:30,852,463...30,896,443
Ensembl chrNW_004624743:30,890,359...30,895,682 		JBrowse link
positive regulation of determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:7,929,997...8,004,235
Ensembl chrNW_004624732:7,929,583...8,005,072 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Mapk8 mitogen-activated protein kinase 8 acts_upstream_of_or_within ISO (PMID:18316368) MGI PMID:18316368 NCBI chrNW_004624928:1,442,216...1,494,275
Ensembl chrNW_004624928:1,439,146...1,494,266 		JBrowse link
primary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:16680724) UniProt PMID:16680724 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:22569553) CACAO PMID:22569553 NCBI chrNW_004624817:931,686...952,474
Ensembl chrNW_004624817:932,970...952,326 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:22569553) CACAO PMID:22569553 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
primitive streak formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor acts_upstream_of_or_within ISO (PMID:23552073) MGI PMID:23552073 NCBI chrNW_004624745:25,096,587...25,113,953
Ensembl chrNW_004624745:25,096,337...25,110,123 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within
involved_in 		ISO (PMID:11291865) MGI
UniProt		 PMID:11291865 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:16368929) MGI PMID:16368929 NCBI chrNW_004624860:4,968,624...4,970,362 JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:21445260) MGI PMID:21445260 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within
involved_in 		ISO (PMID:11291865) MGI
UniProt		 PMID:11291865 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:21445260)
(PMID:14511481) 		MGI PMID:14511481 PMID:21445260 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within
involved_in 		ISO (PMID:11291865) MGI
UniProt		 PMID:11291865 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:9799237) MGI PMID:9799237 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:16397896) MGI PMID:16397896 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
pronephric field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO (PMID:12435636) UniProt PMID:12435636 NCBI chrNW_004624831:375,851...453,968
Ensembl chrNW_004624831:375,866...453,930 		JBrowse link
G Pax8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624749:13,291,880...13,358,066
Ensembl chrNW_004624749:13,300,606...13,357,903 		JBrowse link
prostate induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO (PMID:17317769) MGI PMID:17317769 NCBI chrNW_004624891:3,135,824...3,330,487
Ensembl chrNW_004624891:3,138,848...3,329,459 		JBrowse link
proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:12163408) UniProt PMID:12163408 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
proximal/distal pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:14623241), (PMID:15069081) MGI PMID:14623241 PMID:15069081 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:16887818) MGI PMID:16887818 NCBI chrNW_004624743:30,517,034...30,635,740
Ensembl chrNW_004624743:30,546,323...30,635,737 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO (PMID:22280990) MGI PMID:22280990 NCBI chrNW_004624768:3,567,770...3,628,360 JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:22529374) UniProt PMID:22529374 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:9187081) MGI PMID:9187081 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G En1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:8684466), (PMID:9362463) MGI PMID:8684466 PMID:9362463 NCBI chrNW_004624732:26,333,642...26,338,450
Ensembl chrNW_004624732:26,333,653...26,337,904 		JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (PMID:16342201) MGI PMID:16342201 NCBI chrNW_004624802:10,483,279...10,494,539
Ensembl chrNW_004624802:10,483,219...10,498,609 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16342201) MGI PMID:16342201 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16342201) MGI PMID:16342201 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624804:1,606,182...1,620,932
Ensembl chrNW_004624804:1,608,757...1,620,938 		JBrowse link
G Hoxa10 homeobox A10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,425,468...3,435,218
Ensembl chrNW_004624739:3,425,468...3,433,967 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624739:3,420,501...3,424,151
Ensembl chrNW_004624739:3,418,723...3,423,950 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:8625797) MGI
TreeGrafter		 PMID:8625797 GO_REF:0000118 NCBI chrNW_004624739:3,440,328...3,443,362
Ensembl chrNW_004624739:3,439,217...3,443,449 		JBrowse link
G Hoxb9 homeobox B9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624795:5,118,483...5,123,294
Ensembl chrNW_004624795:5,118,493...5,123,270 		JBrowse link
G Hoxc10 homeobox C10 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624904:2,040,018...2,044,881
Ensembl chrNW_004624904:2,039,754...2,045,096 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624904:2,027,792...2,030,148
Ensembl chrNW_004624904:2,027,993...2,030,148 		JBrowse link
G Hoxc9 homeobox C9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624904:2,054,768...2,058,556
Ensembl chrNW_004624904:2,054,386...2,058,539 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chrNW_004624787:13,256,600...13,260,664
Ensembl chrNW_004624787:13,257,387...13,262,685 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:8625797) MGI
TreeGrafter		 PMID:8625797 GO_REF:0000118 NCBI chrNW_004624787:13,263,020...13,265,538
Ensembl chrNW_004624787:13,249,946...13,265,627 		JBrowse link
G LOC101714280 cytochrome P450 26B1 acts_upstream_of_or_within ISO (PMID:15030763) MGI PMID:15030763 NCBI chrNW_004624762:1,455,828...1,474,201
Ensembl chrNW_004624762:1,456,440...1,472,381 		JBrowse link
G Lrp4 LDL receptor related protein 4 acts_upstream_of_or_within ISO (PMID:17119023) MGI PMID:17119023 NCBI chrNW_004624767:1,708,866...1,757,629 JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO (PMID:16672333)
(PMID:11566859) 		MGI PMID:11566859 PMID:16672333 NCBI chrNW_004624826:2,944,272...3,250,957
Ensembl chrNW_004624826:2,945,004...3,215,110 		JBrowse link
G Pbx2 PBX homeobox 2 acts_upstream_of_or_within ISO (PMID:16672333) MGI PMID:16672333 NCBI chrNW_004624754:24,132,886...24,137,699 JBrowse link
G Sp8 Sp8 transcription factor acts_upstream_of_or_within ISO (PMID:14597661) MGI PMID:14597661 NCBI chrNW_004624739:9,792,963...9,795,697
Ensembl chrNW_004624739:9,793,290...9,795,684 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670 		JBrowse link
proximal/distal pattern formation involved in metanephric nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx1 iroquois homeobox 1 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624751:2,005,849...2,014,775
Ensembl chrNW_004624751:2,010,004...2,014,721 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624751:1,453,390...1,457,500
Ensembl chrNW_004624751:1,453,390...1,457,470 		JBrowse link
proximal/distal pattern formation involved in nephron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irx3 iroquois homeobox 3 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624757:2,543,968...2,547,452
Ensembl chrNW_004624757:2,543,992...2,547,464 		JBrowse link
radial pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr2f2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (PMID:15829524) MGI PMID:15829524 NCBI chrNW_004624768:7,713,771...7,728,102
Ensembl chrNW_004624768:7,701,674...7,728,408 		JBrowse link
regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cer1 cerberus 1, DAN family BMP antagonist involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624736:18,958,081...18,960,617
Ensembl chrNW_004624736:18,958,069...18,960,617 		JBrowse link
G Dand5 DAN domain BMP antagonist family member 5 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624901:534,828...538,923
Ensembl chrNW_004624901:535,137...538,384 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Wnt8a Wnt family member 8A acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624743:30,852,463...30,896,443
Ensembl chrNW_004624743:30,890,359...30,895,682 		JBrowse link
regulation of adaxial/abaxial pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (PMID:17107999) MGI PMID:17107999 NCBI chrNW_004624796:6,277,201...6,282,830
Ensembl chrNW_004624796:6,274,561...6,282,984 		JBrowse link
G Eed embryonic ectoderm development acts_upstream_of_or_within ISO (PMID:17107999) MGI PMID:17107999 NCBI chrNW_004624845:3,679,163...3,712,153
Ensembl chrNW_004624845:3,679,096...3,712,176 		JBrowse link
regulation of cell migration involved in somitogenic axis elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683 		JBrowse link
regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf207 ring finger protein 207 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624818:5,176,316...5,183,610
Ensembl chrNW_004624818:5,178,299...5,183,610 		JBrowse link
regulation of somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdx1 caudal type homeobox 1 involved_in ISO (PMID:22015720) UniProt PMID:22015720 NCBI chrNW_004624774:9,479,173...9,494,962
Ensembl chrNW_004624774:9,479,255...9,494,061 		JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (PMID:22015720) UniProt PMID:22015720 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (PMID:26114479) UniProt PMID:26114479 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004624736:5,721,984...5,730,558
Ensembl chrNW_004624736:5,722,404...5,730,633 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in
acts_upstream_of_or_within 		ISO (PMID:19061953)
(PMID:19779553) 		UniProt
MGI		 PMID:19061953 PMID:19779553 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:7789282) MGI PMID:7789282 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO (PMID:17974128) MGI PMID:17974128 NCBI chrNW_004624823:2,870,762...2,963,134
Ensembl chrNW_004624823:2,871,162...2,961,944 		JBrowse link
rostrocaudal neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:14,952,313...14,975,678
Ensembl chrNW_004624762:14,952,002...14,975,900 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within ISO (PMID:8887324) MGI PMID:8887324 NCBI chrNW_004624796:6,277,201...6,282,830
Ensembl chrNW_004624796:6,274,561...6,282,984 		JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within ISO (PMID:19913509) MGI PMID:19913509 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181 		JBrowse link
secondary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within ISO (PMID:22711842) MGI PMID:22711842 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO (PMID:20702560) BHF-UCL PMID:20702560 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Foxh1 forkhead box H1 involved_in ISO (PMID:15363409) BHF-UCL PMID:15363409 NCBI chrNW_004624735:12,384,728...12,388,234
Ensembl chrNW_004624735:12,386,281...12,387,774 		JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO (PMID:20520780) BHF-UCL PMID:20520780 NCBI chrNW_004624759:7,996,177...8,006,281
Ensembl chrNW_004624759:7,994,242...8,006,311 		JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISO (PMID:26822476) UniProt PMID:26822476 NCBI chrNW_004624787:6,797,462...6,998,859
Ensembl chrNW_004624787:6,798,938...6,998,697 		JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISO (PMID:15890826) UniProt PMID:15890826 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (PMID:22711842) MGI PMID:22711842 NCBI chrNW_004624755:6,176,497...6,298,034
Ensembl chrNW_004624755:6,176,497...6,298,225 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 acts_upstream_of_or_within ISO (PMID:17519332) MGI PMID:17519332 NCBI chrNW_004624800:5,378,364...5,406,474
Ensembl chrNW_004624800:5,379,707...5,406,474 		JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:22569553) CACAO PMID:22569553 NCBI chrNW_004624817:931,686...952,474
Ensembl chrNW_004624817:932,970...952,326 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (PMID:22569553) CACAO PMID:22569553 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
segment specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within ISO (PMID:12421720) MGI PMID:12421720 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO (PMID:9367425) MGI PMID:9367425 NCBI chrNW_004624739:3,501,671...3,504,939
Ensembl chrNW_004624739:3,501,817...3,504,750 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO (PMID:12701106) MGI PMID:12701106 NCBI chrNW_004624919:1,337,269...1,340,607
Ensembl chrNW_004624919:1,339,228...1,340,208 		JBrowse link
G Mllt3 MLLT3 super elongation complex subunit acts_upstream_of_or_within ISO (PMID:12242306) MGI PMID:12242306 NCBI chrNW_004624736:24,298,750...24,586,185 JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:756,679...757,278
Ensembl chrNW_004624738:756,679...757,258 		JBrowse link
G Mtf2 metal response element binding transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624742:4,567,292...4,627,909
Ensembl chrNW_004624742:4,569,064...4,627,862 		JBrowse link
segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD shelterin complex subunit and telomerase recruitment factor acts_upstream_of_or_within ISO (PMID:15537664) MGI PMID:15537664 NCBI chrNW_004624746:18,688,898...18,692,216
Ensembl chrNW_004624746:18,689,364...18,695,944 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 involved_in ISO (PMID:8887313) BHF-UCL PMID:8887313 NCBI chrNW_004624786:9,843,580...9,851,538
Ensembl chrNW_004624786:9,844,157...9,851,301 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:16079160)
(PMID:11262239) 		MGI PMID:11262239 PMID:16079160 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
sensory organ boundary specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntf4 neurotrophin 4 acts_upstream_of_or_within ISO (PMID:10479455) MGI PMID:10479455 NCBI chrNW_004624832:5,005,935...5,008,694
Ensembl chrNW_004624832:5,007,801...5,008,451 		JBrowse link
smoothened signaling pathway involved in dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:20159594)
(PMID:17395647) 		MGI PMID:17395647 PMID:20159594 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:17395647)
(PMID:20159594) 		MGI PMID:17395647 PMID:20159594 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Tbc1d32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:20159594) MGI PMID:20159594 NCBI chrNW_004624798:9,444,536...9,609,957
Ensembl chrNW_004624798:9,444,919...9,609,134 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19223390) MGI PMID:19223390 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO (PMID:22689656) MGI PMID:22689656 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997 		JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:15215207) MGI PMID:15215207 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:15215207) MGI PMID:15215207 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:15215207) MGI PMID:15215207 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:15215207) MGI PMID:15215207 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
somite rostral/caudal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244 		JBrowse link
G Foxa2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624741:22,645,580...22,649,722
Ensembl chrNW_004624741:22,645,519...22,649,854 		JBrowse link
G Gdf3 growth differentiation factor 3 acts_upstream_of_or_within ISO (PMID:16368929) MGI PMID:16368929 NCBI chrNW_004624860:4,968,624...4,970,362 JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO (PMID:22949634) MGI PMID:22949634 NCBI chrNW_004624887:1,065,173...1,279,660
Ensembl chrNW_004624887:1,065,883...1,279,186 		JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:20346937) MGI
TreeGrafter		 PMID:20346937 GO_REF:0000118 NCBI chrNW_004624768:16,832,008...16,834,697
Ensembl chrNW_004624768:16,830,795...16,834,798 		JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:670,796...672,679
Ensembl chrNW_004624760:670,837...671,181 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:11291865) MGI PMID:11291865 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chrNW_004624803:9,868,707...9,879,909 JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO (PMID:20346937)
(PMID:16326386) 		MGI
UniProt		 PMID:16326386 PMID:20346937 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:14,570,025...14,629,950
Ensembl chrNW_004624778:14,570,348...14,630,325 		JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:13,169,096...13,174,498
Ensembl chrNW_004624782:13,169,719...13,174,056 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955 		JBrowse link
somite specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:14960495) MGI PMID:14960495 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Meox1 mesenchyme homeobox 1 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004624795:1,032,278...1,041,635
Ensembl chrNW_004624795:1,032,546...1,040,007 		JBrowse link
G Meox2 mesenchyme homeobox 2 acts_upstream_of_or_within ISO (PMID:12925591) MGI PMID:12925591 NCBI chrNW_004624739:14,483,750...14,547,491
Ensembl chrNW_004624739:14,483,789...14,547,374 		JBrowse link
somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi1 abl interactor 1 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chrNW_004624796:2,312,005...2,431,284 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:15872003) MGI PMID:15872003 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004624784:2,933,172...3,080,131
Ensembl chrNW_004624784:2,937,499...3,078,216 		JBrowse link
G Axin2 axin 2 acts_upstream_of_or_within ISO (PMID:12636920) MGI PMID:12636920 NCBI chrNW_004624870:2,803,743...2,832,489
Ensembl chrNW_004624870:2,800,873...2,832,626 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:22072575) UniProt PMID:22072575 NCBI chrNW_004624760:11,576,683...11,598,354
Ensembl chrNW_004624760:11,579,163...11,598,287 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 acts_upstream_of_or_within
involved_in 		ISO (PMID:15902259)
(PMID:23072809) 		MGI
UniProt		 PMID:15902259 PMID:23072809 NCBI chrNW_004624850:6,135,214...6,142,975
Ensembl chrNW_004624850:6,134,908...6,143,404 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (PMID:9272948)
(PMID:15170697) 		MGI PMID:9272948 PMID:15170697 NCBI chrNW_004624794:12,806,299...12,816,048
Ensembl chrNW_004624794:12,806,868...12,815,582 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244 		JBrowse link
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO (PMID:11562355) UniProt PMID:11562355 NCBI chrNW_004624756:23,060,065...23,062,407
Ensembl chrNW_004624756:23,060,751...23,062,343 		JBrowse link
G Foxc2 forkhead box C2 involved_in ISO (PMID:11562355) UniProt PMID:11562355 NCBI chrNW_004624746:2,632,547...2,634,867
Ensembl chrNW_004624746:2,632,619...2,634,085 		JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11124112) MGI PMID:11124112 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336 		JBrowse link
G Hes7 hes family bHLH transcription factor 7 acts_upstream_of_or_within ISO (PMID:15170214)
(PMID:11641270), (PMID:19779553) 		MGI PMID:11641270 PMID:15170214 PMID:19779553 NCBI chrNW_004624786:10,692,329...10,699,346
Ensembl chrNW_004624786:10,692,329...10,695,132 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035)
(PMID:15937931) 		MGI PMID:15937931 PMID:17325035 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:15545629)
(PMID:10090727) 		MGI PMID:10090727 PMID:15545629 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within
involved_in 		ISO (PMID:18234727)
(PMID:23072809) 		MGI
UniProt		 PMID:18234727 PMID:23072809 NCBI chrNW_004624740:30,392,342...30,404,003
Ensembl chrNW_004624740:30,392,079...30,404,068 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:15469977) 		MGI PMID:15469977 PMID:19795512 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chrNW_004624903:1,412,346...1,436,474
Ensembl chrNW_004624903:1,412,474...1,436,474 		JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15902259) MGI PMID:15902259 NCBI chrNW_004624768:16,832,008...16,834,697
Ensembl chrNW_004624768:16,830,795...16,834,798 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO (PMID:16000382) MGI PMID:16000382 NCBI chrNW_004624770:9,936,202...10,051,018
Ensembl chrNW_004624770:9,941,706...10,051,024 		JBrowse link
G Msgn1 mesogenin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624738:756,679...757,278
Ensembl chrNW_004624738:756,679...757,258 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:33,735...36,052
Ensembl chrNW_004624837:33,864...35,837 		JBrowse link
G Myf6 myogenic factor 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624837:24,711...29,217
Ensembl chrNW_004624837:24,775...25,973 		JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in ISO (PMID:9621431) BHF-UCL PMID:9621431 NCBI chrNW_004624758:18,874,399...18,876,982
Ensembl chrNW_004624758:18,875,475...18,876,971 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO (PMID:24875805) MGI PMID:24875805 NCBI chrNW_004624875:2,997,648...3,006,345
Ensembl chrNW_004624875:2,998,006...3,006,303 		JBrowse link
G Nrarp NOTCH regulated ankyrin repeat protein acts_upstream_of_or_within ISO (PMID:21795391) MGI PMID:21795391 NCBI chrNW_004624760:670,796...672,679
Ensembl chrNW_004624760:670,837...671,181 		JBrowse link
G Palb2 partner and localizer of BRCA2 acts_upstream_of_or_within ISO (PMID:20484223) MGI PMID:20484223 NCBI chrNW_004624782:8,752,510...8,780,972
Ensembl chrNW_004624782:8,751,866...8,780,884 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO (PMID:16093716) MGI PMID:16093716 NCBI chrNW_004624741:22,009,733...22,017,377
Ensembl chrNW_004624741:22,007,778...22,017,325 		JBrowse link
G Pcdh8 protocadherin 8 acts_upstream_of_or_within ISO (PMID:12591245) MGI PMID:12591245 NCBI chrNW_004624748:14,285,553...14,290,236
Ensembl chrNW_004624748:14,285,475...14,290,166 		JBrowse link
G Plxna2 plexin A2 involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624807:3,643,283...3,829,817
Ensembl chrNW_004624807:3,643,255...3,834,128 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:12697902) MGI PMID:12697902 NCBI chrNW_004624741:338,028...364,414
Ensembl chrNW_004624741:337,148...364,301 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 acts_upstream_of_or_within ISO (PMID:9636176) MGI PMID:9636176 NCBI chrNW_004624731:28,682,594...28,701,841
Ensembl chrNW_004624731:28,682,636...28,702,806 		JBrowse link
G Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha involved_in ISO (PMID:15687260) BHF-UCL PMID:15687260 NCBI chrNW_004624730:12,384,691...12,568,115
Ensembl chrNW_004624730:12,429,902...12,567,683 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (PMID:16687486) MGI PMID:16687486 NCBI chrNW_004624735:7,534,483...7,702,079
Ensembl chrNW_004624735:7,534,506...7,700,305 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:9153393)
(PMID:10557208), (PMID:19779553) 		MGI PMID:9153393 PMID:10557208 PMID:19779553 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208), (PMID:19779553) MGI PMID:10557208 PMID:19779553 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (PMID:19779553) MGI PMID:19779553 NCBI chrNW_004624755:6,176,497...6,298,034
Ensembl chrNW_004624755:6,176,497...6,298,225 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within
involved_in 		ISO (PMID:17531978)
(PMID:16326386) 		MGI
UniProt		 PMID:16326386 PMID:17531978 NCBI chrNW_004624799:10,750,928...10,755,797 JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004624868:479,303...732,723
Ensembl chrNW_004624868:479,290...731,650 		JBrowse link
G Sema3c semaphorin 3C involved_in ISO (PMID:19666519) BHF-UCL PMID:19666519 NCBI chrNW_004624739:29,484,557...29,642,981
Ensembl chrNW_004624739:29,484,461...29,626,619 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within
involved_in 		ISO (PMID:16467359)
(PMID:18257070)
(PMID:10654605) 		MGI
BHF-UCL		 PMID:10654605 PMID:16467359 PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 involved_in ISO (PMID:28893950) MGI PMID:28893950 NCBI chrNW_004624817:8,103,065...8,104,435
Ensembl chrNW_004624817:8,103,065...8,104,420 		JBrowse link
G Tbx18 T-box transcription factor 18 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:15155583) MGI
TreeGrafter		 PMID:15155583 GO_REF:0000118 NCBI chrNW_004624799:9,694,167...9,721,468
Ensembl chrNW_004624799:9,694,374...9,719,385 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:16835439)
(PMID:8293872)
(PMID:15384171) 		MGI
TreeGrafter		 PMID:8293872 PMID:15384171 PMID:16835439 GO_REF:0000118 NCBI chrNW_004624785:13,058,520...13,066,607
Ensembl chrNW_004624785:13,058,444...13,066,719 		JBrowse link
G Tcap titin-cap involved_in ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004624795:3,411,744...3,414,229
Ensembl chrNW_004624795:3,410,951...3,413,052 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO (PMID:8955271) MGI PMID:8955271 NCBI chrNW_004624741:1,689,397...1,694,934
Ensembl chrNW_004624741:1,689,431...1,694,815 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chrNW_004624747:23,389,262...23,399,962
Ensembl chrNW_004624747:23,389,262...23,399,955 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO (PMID:17320900) MGI PMID:17320900 NCBI chrNW_004624786:10,266,316...10,282,664
Ensembl chrNW_004624786:10,263,518...10,271,218 		JBrowse link
G Ttn titin involved_in ISO (PMID:9817758) BHF-UCL PMID:9817758 NCBI chrNW_004624844:484,593...760,155 JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:12636920)
(PMID:16291790), (PMID:8299937) 		MGI PMID:8299937 PMID:12636920 PMID:16291790 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624800:4,352,566...4,389,707
Ensembl chrNW_004624800:4,355,539...4,390,016 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:16157277), (PMID:16598713) MGI PMID:16157277 PMID:16598713 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997 		JBrowse link
specification of animal organ identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO (PMID:20615956) MGI PMID:20615956 NCBI chrNW_004624732:4,043,867...4,052,621
Ensembl chrNW_004624732:4,043,867...4,052,551 		JBrowse link
specification of animal organ position term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:17071745) MGI PMID:17071745 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO (PMID:9520319) MGI PMID:9520319 NCBI chrNW_004624739:3,453,358...3,498,061
Ensembl chrNW_004624739:3,478,406...3,498,333 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:17071745) MGI PMID:17071745 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:16790474) UniProt PMID:16790474 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
specification of axis polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcor BCL6 corepressor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:15,338,331...15,465,683
Ensembl chrNW_004624762:15,420,596...15,465,873 		JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 involved_in ISO (PMID:15821257) UniProt PMID:15821257 NCBI chrNW_004624818:7,516,279...7,517,654
Ensembl chrNW_004624818:7,516,189...7,518,734 		JBrowse link
G Irx1 iroquois homeobox 1 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624751:2,005,849...2,014,775
Ensembl chrNW_004624751:2,010,004...2,014,721 		JBrowse link
G Irx2 iroquois homeobox 2 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624751:1,453,390...1,457,500
Ensembl chrNW_004624751:1,453,390...1,457,470 		JBrowse link
G Irx3 iroquois homeobox 3 involved_in ISO (PMID:17875669) UniProt PMID:17875669 NCBI chrNW_004624757:2,543,968...2,547,452
Ensembl chrNW_004624757:2,543,992...2,547,464 		JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in ISO (PMID:16790474) UniProt PMID:16790474 NCBI chrNW_004624738:2,136,228...2,559,092
Ensembl chrNW_004624738:2,136,151...2,138,441 		JBrowse link
spinal cord anterior/posterior patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (PMID:16790475) MGI PMID:16790475 NCBI chrNW_004624802:12,259,971...12,269,440 JBrowse link
spinal cord dorsal/ventral patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:11472837) BHF-UCL PMID:11472837 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chrNW_004624832:4,509,118...4,514,180
Ensembl chrNW_004624832:4,509,505...4,514,183 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16364285)
(PMID:15215207)
(PMID:11748151) 		MGI PMID:11748151 PMID:15215207 PMID:16364285 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16364285)
(PMID:15215207) 		MGI PMID:15215207 PMID:16364285 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:21209331) BHF-UCL PMID:21209331 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Intu inturned planar cell polarity protein acts_upstream_of_or_within ISO (PMID:21761479) MGI PMID:21761479 NCBI chrNW_004624777:8,585,777...8,674,887
Ensembl chrNW_004624777:8,596,178...8,675,295 		JBrowse link
G Rab23 RAB23, member RAS oncogene family acts_upstream_of_or_within ISO (PMID:16364285)
(PMID:15755804), (PMID:16364285)
(PMID:14603322) 		MGI PMID:14603322 PMID:15755804 PMID:16364285 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Rfx4 regulatory factor X4 acts_upstream_of_or_within ISO (PMID:19887680) MGI PMID:19887680 NCBI chrNW_004624750:2,722,790...2,869,676
Ensembl chrNW_004624750:2,722,696...2,869,668 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312
(PMID:11748151) 		MGI PMID:9230312 PMID:11748151 RGD:8553789 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within 		ISO (PMID:21209331)
(PMID:19286674) 		BHF-UCL
MGI		 PMID:19286674 PMID:21209331 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:16459298) MGI PMID:16459298 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
spinal cord patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Reln reelin acts_upstream_of_or_within ISO (PMID:16580148) RGD
MGI		 PMID:14648677 PMID:16580148 RGD:2317803 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:16855091)
(PMID:11719201) 		MGI PMID:11719201 PMID:16855091 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:18701439) MGI PMID:18701439 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:26166575) MGI PMID:26166575 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11060228) RGD
MGI		 PMID:9811591 PMID:11060228 RGD:2306311 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18694563) UniProt PMID:18694563 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624733:11,497,872...11,499,957
Ensembl chrNW_004624733:11,498,249...11,498,974 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO (PMID:23419067) CAFA PMID:23419067 NCBI chrNW_004624733:11,578,934...11,587,250 JBrowse link
G Wt1 WT1 transcription factor involved_in ISO (PMID:8395349) UniProt PMID:8395349 NCBI chrNW_004624766:20,899,546...20,937,084
Ensembl chrNW_004624766:20,900,676...20,937,202 		JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO (PMID:16316641) MGI PMID:16316641 NCBI chrNW_004624741:28,156,956...28,217,133
Ensembl chrNW_004624741:28,157,172...28,217,113 		JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:10,372,172...10,484,766
Ensembl chrNW_004624765:10,372,099...10,484,963 		JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO (PMID:16319111) MGI PMID:16319111 NCBI chrNW_004624730:4,035,909...4,064,796
Ensembl chrNW_004624730:4,035,874...4,065,667 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of ISO (PMID:15337776) MGI PMID:15337776 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
ventral midline determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISO (PMID:16020526) UniProt PMID:16020526 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
G Dll4 delta like canonical Notch ligand 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624804:8,179,729...8,189,001
Ensembl chrNW_004624804:8,179,731...8,191,284 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (PMID:16020526), (PMID:17728344) UniProt PMID:16020526 PMID:17728344 NCBI chrNW_004624747:11,122,463...11,149,505
Ensembl chrNW_004624747:11,123,615...11,149,571 		JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:21,857,911...21,860,128
Ensembl chrNW_004624741:21,852,205...21,860,040 		JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 acts_upstream_of_or_within ISO (PMID:11239429) MGI PMID:11239429 NCBI chrNW_004624766:11,431,699...11,444,150
Ensembl chrNW_004624766:11,440,470...11,444,150 		JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 acts_upstream_of_or_within ISO (PMID:22932389) MGI PMID:22932389 NCBI chrNW_004624736:5,648,318...5,662,301
Ensembl chrNW_004624736:5,648,318...5,661,584 		JBrowse link
G Evx1 even-skipped homeobox 1 acts_upstream_of_or_within ISO (PMID:11239430) MGI PMID:11239430 NCBI chrNW_004624739:3,354,191...3,358,961
Ensembl chrNW_004624739:3,355,578...3,358,947 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:15215207) MGI PMID:15215207 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:15215207) MGI PMID:15215207 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:19666821) MGI PMID:19666821 NCBI chrNW_004624760:1,428,496...1,435,414
Ensembl chrNW_004624760:1,429,384...1,435,414 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:9230312) MGI PMID:9230312 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:20844123) MGI PMID:20844123 NCBI chrNW_004624793:1,341,643...1,648,168
Ensembl chrNW_004624793:1,370,243...1,371,358 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling acts_upstream_of_or_within ISO (PMID:19684112) MGI PMID:19684112 NCBI chrNW_004624831:1,882,114...2,012,341
Ensembl chrNW_004624831:1,882,077...2,012,341 		JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:19386662) ParkinsonsUK-UCL PMID:19386662 NCBI chrNW_004624805:8,438,485...8,574,845
Ensembl chrNW_004624805:8,438,498...8,574,508 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:10,372,172...10,484,766
Ensembl chrNW_004624765:10,372,099...10,484,963 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:19386662) ParkinsonsUK-UCL PMID:19386662 NCBI chrNW_004624739:32,104,014...32,426,980
Ensembl chrNW_004624739:32,105,824...32,309,271 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:19386662) ParkinsonsUK-UCL PMID:19386662 NCBI chrNW_004624730:4,035,909...4,064,796
Ensembl chrNW_004624730:4,035,874...4,065,667 		JBrowse link
vertebrate eye-specific patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qa complement C1q A chain involved_in ISO (PMID:18083105) ARUK-UCL PMID:18083105 NCBI chrNW_004624764:7,363,615...7,366,408
Ensembl chrNW_004624764:7,363,567...7,366,617 		JBrowse link
G C3 complement C3 involved_in ISO (PMID:18083105) ARUK-UCL PMID:18083105 NCBI chrNW_004624828:3,773,816...3,798,077
Ensembl chrNW_004624828:3,770,221...3,797,946 		JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (PMID:22632727) ARUK-UCL PMID:22632727 NCBI chrNW_004624782:14,316,505...14,367,841
Ensembl chrNW_004624782:14,318,499...14,367,922 		JBrowse link
Wnt signaling pathway involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15469977) MGI PMID:15469977 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591 		JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:25281935 RGD:12832757 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538 		JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO (PMID:10809672) MGI PMID:10809672 NCBI chrNW_004624768:3,336,374...3,517,697
Ensembl chrNW_004624768:3,331,207...3,516,394 		JBrowse link
zygotic specification of dorsal/ventral axis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078 		JBrowse link
G Smad6 SMAD family member 6 involved_in ISO (PMID:9436979) BHF-UCL PMID:9436979 NCBI chrNW_004624781:6,043,183...6,108,959
Ensembl chrNW_004624781:6,042,904...6,107,860 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17647
    multicellular organismal process 7727
      pattern specification process 471
        axis specification + 95
        cell fate commitment involved in pattern specification + 14
        embryonic pattern specification + 70
        head segmentation + 0
        imaginal disc lineage restriction + 0
        internode patterning 0
        intracellular mRNA localization involved in pattern specification process + 0
        lung pattern specification process + 1
        maintenance of left/right asymmetry + 0
        neural plate pattern specification + 9
        ommatidial rotation 0
        pattern specification involved in kidney development + 8
        regionalization + 433
        regulation of R8 cell spacing in compound eye + 0
        renal system pattern specification + 8
        segment specification + 15
        specification of axis polarity + 4
        specification of symmetry + 136
Path 2
Term Annotations click to browse term
  biological_process 17647
    developmental process 6435
      anatomical structure development 6017
        multicellular organism development 4847
          pattern specification process 471
            axis specification + 95
            cell fate commitment involved in pattern specification + 14
            embryonic pattern specification + 70
            head segmentation + 0
            imaginal disc lineage restriction + 0
            internode patterning 0
            intracellular mRNA localization involved in pattern specification process + 0
            lung pattern specification process + 1
            maintenance of left/right asymmetry + 0
            neural plate pattern specification + 9
            ommatidial rotation 0
            pattern specification involved in kidney development + 8
            regionalization + 433
            regulation of R8 cell spacing in compound eye + 0
            renal system pattern specification + 8
            segment specification + 15
            specification of axis polarity + 4
            specification of symmetry + 136
paths to the root