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ONTOLOGY REPORT - ANNOTATIONS

Term:pattern specification process
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Accession:GO:0007389 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
Synonyms:related_synonym: pattern biosynthesis;   pattern formation

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pattern specification process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:17849440) MGI PMID:17849440 NCBI chr15:923,222...962,438 JBrowse link
G ACVR2B activin A receptor type 2B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:933,070...939,419 JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11641221) MGI
Ensembl		 PMID:11641221 GO_REF:0000107 NCBI chr20:23,471,651...23,482,317
Ensembl chr20:23,471,736...23,481,543 		JBrowse link
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11641221) Ensembl
MGI		 PMID:11641221 GO_REF:0000107 NCBI chr 1:21,051,413...21,099,159
Ensembl chr 1:21,051,580...21,097,605 		JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16740478) MGI
TreeGrafter		 PMID:16740478 GO_REF:0000118 NCBI chr23:15,992,437...16,135,117
Ensembl chr23:16,042,287...16,137,067 		JBrowse link
G APC2 APC regulator of WNT signaling pathway 2 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 6:1,236,335...1,241,389 JBrowse link
G ASCL1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15930101) MGI
Ensembl		 PMID:15930101 GO_REF:0000107 NCBI chr11:98,182,213...98,185,057
Ensembl chr11:98,182,787...98,183,506 		JBrowse link
G ASPH aspartate beta-hydroxylase acts_upstream_of_or_within ISO (PMID:11773073) MGI PMID:11773073 NCBI chr 8:57,378,019...57,599,812
Ensembl chr 8:57,375,894...57,565,259 		JBrowse link
G BMP5 bone morphogenetic protein 5 acts_upstream_of_or_within ISO (PMID:1339316) MGI PMID:1339316 NCBI chr17:15,696,379...15,819,454
Ensembl chr17:15,696,580...15,819,564 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7590254) Ensembl
MGI		 PMID:7590254 GO_REF:0000107 NCBI chr 2:6,856,396...6,954,948
Ensembl chr 2:6,856,453...6,954,944 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15716346) Ensembl
MGI		 PMID:15716346 GO_REF:0000107 NCBI chr 9:44,944,463...45,108,832
Ensembl chr 9:44,941,460...45,027,275 		JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19004860) MGI
Ensembl		 PMID:19004860 GO_REF:0000107 NCBI chr 1:65,282,311...65,436,007
Ensembl chr 1:65,282,318...65,435,834 		JBrowse link
G CDX1 caudal type homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11959827) MGI
Ensembl		 PMID:11959827 GO_REF:0000107 NCBI chr23:52,763,731...52,795,005
Ensembl chr23:52,776,761...52,795,387 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11959827) Ensembl
MGI		 PMID:11959827 GO_REF:0000107 NCBI chr 3:7,080,142...7,088,010
Ensembl chr 3:7,078,503...7,087,285 		JBrowse link
G CHRD chordin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12397106) UniProt
MGI		 PMID:12397106 GO_REF:0000117 NCBI chr15:5,030,618...5,040,399
Ensembl chr15:5,030,457...5,039,991 		JBrowse link
G CRAMP1 cramped chromatin regulator homolog 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,523,591...1,589,254
Ensembl chr 5:1,524,015...1,589,344 		JBrowse link
G DCHS1 dachsous cadherin-related 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26258302) Ensembl
MGI		 PMID:26258302 GO_REF:0000107 NCBI chr 1:58,170,494...58,204,156
Ensembl chr 1:58,184,591...58,205,962 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16916509)
(PMID:16530750)		 MGI
Ensembl		 PMID:16530750 PMID:16916509 GO_REF:0000107 NCBI chr 8:66,902,961...67,238,149
Ensembl chr 8:66,902,972...67,060,567 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G FST follistatin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15525533) Ensembl
MGI		 PMID:15525533 GO_REF:0000107 NCBI chr 4:49,773,646...49,780,343
Ensembl chr 4:49,773,980...49,780,333 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8575294)
(PMID:14602680)		 MGI
Ensembl		 PMID:8575294 PMID:14602680 GO_REF:0000107 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14602680) Ensembl
MGI		 PMID:14602680 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14608380) Ensembl
MGI		 PMID:14608380 GO_REF:0000107 NCBI chr20:108,338,891...108,375,351
Ensembl chr20:108,330,121...108,361,887 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12930780)
(PMID:11731457), (PMID:12724834), (PMID:15930101)		 Ensembl
MGI		 PMID:11731457 PMID:12724834 PMID:12930780 PMID:15930101 GO_REF:0000107 NCBI chr 7:14,436,848...14,446,197
Ensembl chr 7:14,439,371...14,440,944 		JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18302773) Ensembl
MGI		 PMID:18302773 GO_REF:0000107 NCBI chr15:88,220,093...88,222,563
Ensembl chr15:88,220,083...88,223,243 		JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18302773) Ensembl
MGI		 PMID:18302773 GO_REF:0000107 NCBI chr13:47,965,808...47,977,435
Ensembl chr13:47,964,847...47,977,346 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7903601)
(PMID:7903600)		 MGI
Ensembl		 PMID:7903600 PMID:7903601 GO_REF:0000107 NCBI chr21:31,261,992...31,271,071
Ensembl chr21:31,266,459...31,268,221 		JBrowse link
G HOXA5 homeobox A5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11900462) MGI
Ensembl		 PMID:11900462 GO_REF:0000107 NCBI chr21:31,224,017...31,227,819
Ensembl chr21:31,224,977...31,227,994 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:8900279) MGI PMID:8900279 NCBI chr10:61,681,474...61,693,974
Ensembl chr10:61,682,400...61,684,168 		JBrowse link
G HOXD12 homeobox D12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8900279) Ensembl
MGI		 PMID:8900279 GO_REF:0000107 NCBI chr10:61,674,853...61,679,412
Ensembl chr10:61,674,864...61,675,819 		JBrowse link
G HOXD13 homeobox D13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8106170)
(PMID:8900279)
(PMID:11850178)		 Ensembl
MGI		 PMID:8106170 PMID:8900279 PMID:11850178 GO_REF:0000107 NCBI chr10:61,662,670...61,670,955
Ensembl chr10:61,667,880...61,669,743 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9671585) Ensembl
MGI		 PMID:9671585 GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10498685)
(PMID:15930111)		 MGI
Ensembl		 PMID:10498685 PMID:15930111 GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LOC103219825 protein patched homolog 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9262482) MGI
Ensembl		 PMID:9262482 GO_REF:0000107 NCBI chr12:107,580,895...107,656,443
Ensembl chr12:107,590,663...107,652,985 		JBrowse link
G LOC103222955 uncharacterized LOC103222955 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16399080) Ensembl
MGI		 PMID:16399080 GO_REF:0000107 NCBI chr19:4,855,633...4,889,674
Ensembl chr19:4,855,611...4,890,302 		JBrowse link
G MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 acts_upstream_of_or_within ISO (PMID:1633717) MGI PMID:1633717 NCBI chr24:23,853,710...24,705,276
Ensembl chr24:23,856,533...24,318,531 		JBrowse link
G MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr19:20,177,108...20,195,406
Ensembl chr19:20,176,878...20,194,915 		JBrowse link
G NKX2-1 NK2 homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12930780) MGI
Ensembl		 PMID:12930780 GO_REF:0000107 NCBI chr24:13,274,118...13,317,533
Ensembl chr24:13,310,846...13,317,056 		JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12397106) Ensembl
MGI		 PMID:12397106 GO_REF:0000107 NCBI chr16:36,816,783...36,818,693
Ensembl chr16:36,817,476...36,818,174 		JBrowse link
G NRG3 neuregulin 3 acts_upstream_of_or_within ISO (PMID:10723730) MGI PMID:10723730 NCBI chr 9:48,846,287...49,957,238 JBrowse link
G PAX1 paired box 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11900462) Ensembl
MGI		 PMID:11900462 GO_REF:0000107 NCBI chr 2:50,706,029...50,722,634 JBrowse link
G RAX retina and anterior neural fold homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:13970082) Ensembl
MGI		 PMID:13970082 GO_REF:0000107 NCBI chr18:20,464,417...20,469,281
Ensembl chr18:20,464,657...20,468,812 		JBrowse link
G RNF111 ring finger protein 111 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11298452) MGI
Ensembl		 PMID:11298452 GO_REF:0000107 NCBI chr26:24,416,946...24,528,989
Ensembl chr26:24,416,093...24,528,862 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14602680)
(PMID:12231626)		 Ensembl
MGI
UniProt		 PMID:12231626 PMID:14602680 GO_REF:0000107 GO_REF:0000117 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SHROOM3 shroom family member 3 acts_upstream_of_or_within ISO (PMID:10589677) MGI PMID:10589677 NCBI chr 7:25,185,130...25,279,765
Ensembl chr 7:25,215,232...25,283,214 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16916509)
(PMID:16530750)		 Ensembl
MGI		 PMID:16530750 PMID:16916509 GO_REF:0000107 NCBI chr24:37,840,399...37,855,801
Ensembl chr24:37,840,309...37,845,192 		JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17849440) MGI
Ensembl		 PMID:17849440 GO_REF:0000107 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15107405) Ensembl
TreeGrafter
MGI		 PMID:15107405 GO_REF:0000107 GO_REF:0000118 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G SOSTDC1 sclerostin domain containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16179481) MGI
Ensembl		 PMID:16179481 GO_REF:0000107 NCBI chr21:41,645,884...41,651,360
Ensembl chr21:41,647,079...41,652,093 		JBrowse link
G SYNGAP1 synaptic Ras GTPase activating protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16452659) Ensembl
MGI		 PMID:16452659 GO_REF:0000107 NCBI chr17:38,612,777...38,646,382
Ensembl chr17:38,617,679...38,646,192 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16399080)
(PMID:15385444), (PMID:15652707)		 MGI PMID:15385444 PMID:15652707 PMID:16399080 NCBI chr19:5,980,114...5,986,313
Ensembl chr19:5,980,587...5,987,244 		JBrowse link
G TBX5 T-box transcription factor 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15289437) MGI
TreeGrafter
Ensembl		 PMID:15289437 GO_REF:0000107 GO_REF:0000118 NCBI chr11:109,638,694...109,696,619
Ensembl chr11:109,638,715...109,689,177 		JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within ISO (PMID:10227294) MGI PMID:10227294 NCBI chr15:83,861,489...84,126,675 JBrowse link
G TP63 tumor protein p63 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:84,093,957...84,123,905 JBrowse link
G UNCX UNC homeobox acts_upstream_of_or_within ISO (PMID:10804168)
(PMID:10804169)		 MGI PMID:10804168 PMID:10804169 NCBI chr28:20,365,400...20,367,458 JBrowse link
G UNCX UNC homeobox involved_in IEA Ensembl GO_REF:0000107 Ensembl chr28:20,365,192...20,370,654 JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:9389660) MGI PMID:9389660 NCBI chr 9:30,674,893...30,862,682
Ensembl chr 9:30,674,578...30,863,250 		JBrowse link
G ZIC1 Zic family member 1 involved_in ISO (PMID:9070329) UniProt PMID:9070329 NCBI chr15:43,280,429...43,285,674
Ensembl chr15:43,281,433...43,284,948 		JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within ISO (PMID:11959836) MGI PMID:11959836 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKA aurora kinase A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22939930) Ensembl
MGI		 PMID:22939930 GO_REF:0000107 NCBI chr 2:7,730,060...7,753,167
Ensembl chr 2:7,734,128...7,752,395 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10964473) MGI
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G CDX1 caudal type homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:52,763,731...52,795,005
Ensembl chr23:52,776,761...52,795,387 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:7,080,142...7,088,010
Ensembl chr 3:7,078,503...7,087,285 		JBrowse link
G CDX4 caudal type homeobox 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:63,013,317...63,022,748
Ensembl chr  X:63,014,049...63,021,422 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15004567)
(PMID:18241853)		 MGI
Ensembl		 PMID:15004567 PMID:18241853 GO_REF:0000107 NCBI chr12:64,859,301...64,865,676
Ensembl chr12:64,860,958...64,863,544 		JBrowse link
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18241853) MGI
Ensembl		 PMID:18241853 GO_REF:0000107 NCBI chr22:7,993,724...8,000,935
Ensembl chr22:7,997,383...8,000,629 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10662781) Ensembl
MGI		 PMID:10662781 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:53,424,693...53,429,094
Ensembl chr11:53,424,868...53,425,576 		JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within ISO (PMID:10964473) MGI PMID:10964473 NCBI chr  X:108,688,706...109,143,653 JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:15680351) MGI PMID:15680351 NCBI chr 8:75,225,081...75,228,941
Ensembl chr 8:75,224,769...75,228,896 		JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15680351) Ensembl
MGI		 PMID:15680351 GO_REF:0000107 NCBI chr13:47,965,808...47,977,435
Ensembl chr13:47,964,847...47,977,346 		JBrowse link
G LDB1 LIM domain binding 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12490556) MGI
Ensembl		 PMID:12490556 GO_REF:0000107 NCBI chr 9:95,102,312...95,153,029
Ensembl chr 9:95,138,424...95,153,179 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10529425) MGI
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LOC103229999 left-right determination factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:3,828,944...3,834,679
Ensembl chr25:3,830,059...3,833,847 		JBrowse link
G LOC103230001 left-right determination factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15004567) MGI
TreeGrafter		 PMID:15004567 GO_REF:0000118 NCBI chr25:3,881,085...3,884,596
Ensembl chr25:3,881,837...3,884,151 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11311163) MGI
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr10:82,355,983...82,440,925
Ensembl chr10:82,364,219...82,439,278 		JBrowse link
G RNF2 ring finger protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12183370) Ensembl
MGI		 PMID:12183370 GO_REF:0000107 NCBI chr25:44,289,662...44,345,168
Ensembl chr25:44,291,576...44,345,236 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:62,212,920...62,219,976
Ensembl chr14:62,213,115...62,220,069 		JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:11731796) MGI PMID:11731796 NCBI chr20:129,243,033...129,324,162
Ensembl chr20:129,242,445...129,324,138 		JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:15155583) MGI PMID:15155583 NCBI chr13:9,407,384...9,441,157
Ensembl chr13:9,411,004...9,439,642 		JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (PMID:19841259) UniProt PMID:19841259 NCBI chr20:64,879,594...64,987,460
Ensembl chr20:64,879,864...64,977,038 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:60,473,029...60,484,673 JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9790191) MGI
Ensembl		 PMID:9790191 GO_REF:0000107 NCBI chr22:7,993,724...8,000,935
Ensembl chr22:7,997,383...8,000,629 		JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15870281) Ensembl
MGI		 PMID:15870281 GO_REF:0000107 NCBI chr11:65,097,789...65,208,373
Ensembl chr11:65,197,385...65,208,379 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:17,957,264...18,020,887
Ensembl chr22:17,960,845...18,020,653 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:109,952,100...109,966,328
Ensembl chr11:109,952,054...109,965,065 		JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chr14:21,849,585...22,028,147 JBrowse link
G WNT5A Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2A activin A receptor type 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10452853), (PMID:16991118) MGI
Ensembl		 PMID:10452853 PMID:16991118 GO_REF:0000107 NCBI chr10:33,223,902...33,311,257
Ensembl chr10:33,224,099...33,307,720 		JBrowse link
G ACVR2B activin A receptor type 2B involved_in
acts_upstream_of_or_within		 ISO (PMID:9916847)
(PMID:10452853), (PMID:16991118)
(PMID:15542835)
(PMID:16845371), (PMID:16991118), (PMID:9242489)		 HGNC-UCL
MGI		 PMID:9242489 PMID:9916847 PMID:10452853 PMID:15542835 PMID:16845371 More... NCBI chr15:923,222...962,438 JBrowse link
G ACVR2B activin A receptor type 2B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:933,070...939,419 JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16368932)
(PMID:15652703), (PMID:15872003)
(PMID:17067568)		 MGI
Ensembl		 PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 GO_REF:0000107 NCBI chr26:25,439,159...25,557,199
Ensembl chr26:25,439,360...25,557,202 		JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (PMID:9847249) MGI PMID:9847249 NCBI chr11:80,687,799...80,717,886
Ensembl chr11:80,696,271...80,717,574 		JBrowse link
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9374397), (PMID:9847249)
(PMID:9847249)		 Ensembl
MGI		 PMID:9374397 PMID:9847249 GO_REF:0000107 NCBI chr 1:21,051,413...21,099,159
Ensembl chr 1:21,051,580...21,097,605 		JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chr23:15,992,437...16,135,117
Ensembl chr23:16,042,287...16,137,067 		JBrowse link
G ARC activity regulated cytoskeleton associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10727859) Ensembl
MGI		 PMID:10727859 GO_REF:0000107 NCBI chr 8:136,857,402...136,860,933
Ensembl chr 8:136,859,438...136,860,628 		JBrowse link
G BARX1 BARX homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17855428) MGI
Ensembl		 PMID:17855428 GO_REF:0000107 NCBI chr12:104,299,516...104,307,613
Ensembl chr12:104,303,265...104,306,251 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15136140) Ensembl
MGI		 PMID:15136140 GO_REF:0000107 NCBI chr 9:44,944,463...45,108,832
Ensembl chr 9:44,941,460...45,027,275 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10772805)
(PMID:15542835)		 Ensembl
MGI		 PMID:10772805 PMID:15542835 GO_REF:0000107 NCBI chr10:88,103,442...88,302,578
Ensembl chr10:88,106,072...88,303,734 		JBrowse link
G BPTF bromodomain PHD finger transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18974875)
(PMID:18794365)		 Ensembl
MGI		 PMID:18794365 PMID:18974875 GO_REF:0000107 NCBI chr16:53,478,706...53,634,617
Ensembl chr16:53,478,464...53,634,183 		JBrowse link
G BTG2 BTG anti-proliferation factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15542835) MGI
Ensembl		 PMID:15542835 GO_REF:0000107 NCBI chr25:26,032,404...26,036,500
Ensembl chr25:26,034,632...26,036,538 		JBrowse link
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19754878) Ensembl
MGI		 PMID:19754878 GO_REF:0000107 NCBI chr 1:117,091,778...117,255,354
Ensembl chr 1:117,092,178...117,152,030 		JBrowse link
G CDX1 caudal type homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11784046), (PMID:7585967) MGI
Ensembl		 PMID:7585967 PMID:11784046 GO_REF:0000107 NCBI chr23:52,763,731...52,795,005
Ensembl chr23:52,776,761...52,795,387 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19853565) Ensembl
MGI		 PMID:19853565 GO_REF:0000107 NCBI chr 3:7,080,142...7,088,010
Ensembl chr 3:7,078,503...7,087,285 		JBrowse link
G CDX4 caudal type homeobox 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19853565) MGI
Ensembl		 PMID:19853565 GO_REF:0000107 NCBI chr  X:63,013,317...63,022,748
Ensembl chr  X:63,014,049...63,021,422 		JBrowse link
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18849982)
(PMID:19357712)		 MGI
Ensembl		 PMID:18849982 PMID:19357712 GO_REF:0000107 NCBI chr19:28,842,332...29,030,672
Ensembl chr19:28,844,644...29,030,216 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9501024) MGI
Ensembl		 PMID:9501024 GO_REF:0000107 NCBI chr12:64,859,301...64,865,676
Ensembl chr12:64,860,958...64,863,544 		JBrowse link
G CTNNBIP1 catenin beta interacting protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15148409) MGI
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr20:121,861,266...121,921,541
Ensembl chr20:121,892,415...121,921,621 		JBrowse link
G EMX2 empty spiracles homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15917450)
(PMID:12196586)		 Ensembl
MGI		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 9:110,347,043...110,353,647
Ensembl chr 9:110,347,379...110,353,643 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11358868) Ensembl
MGI		 PMID:11358868 GO_REF:0000107 NCBI chr 8:138,685,137...138,688,451
Ensembl chr 8:138,685,626...138,687,144 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275) MGI PMID:19877275 NCBI chr 6:42,968,715...42,975,374
Ensembl chr 6:42,969,000...42,975,368 		JBrowse link
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918385)
(PMID:10391213)		 Ensembl
MGI		 PMID:10391213 PMID:23918385 GO_REF:0000107 NCBI chr11:51,693,664...51,702,781
Ensembl chr11:51,693,717...51,700,278 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22841643) MGI
Ensembl		 PMID:22841643 GO_REF:0000107 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22841643)
(PMID:15315762)		 Ensembl
MGI		 PMID:15315762 PMID:22841643 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G GRSF1 G-rich RNA sequence binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15857914) Ensembl
MGI		 PMID:15857914 GO_REF:0000107 NCBI chr 7:19,329,379...19,350,722
Ensembl chr 7:19,334,131...19,350,522 		JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISO (PMID:16936074) UniProt PMID:16936074 NCBI chr 9:85,957,684...85,963,414
Ensembl chr 9:85,957,779...85,963,404 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537918) Ensembl
MGI		 PMID:16537918 GO_REF:0000107 NCBI chr20:19,680,952...19,731,503
Ensembl chr20:19,680,778...19,730,129 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16537918) MGI
Ensembl		 PMID:16537918 GO_REF:0000107 NCBI chr21:108,310,782...108,533,274
Ensembl chr21:108,322,096...108,533,226 		JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15872003) Ensembl
MGI		 PMID:15872003 GO_REF:0000107 NCBI chr16:30,033,486...30,097,106
Ensembl chr16:30,036,766...30,097,088 		JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:15367676)
(PMID:10529420)		 MGI PMID:10529420 PMID:15367676 NCBI chr21:31,272,410...31,275,503
Ensembl chr21:31,272,889...31,275,551 		JBrowse link
G HOXA10 homeobox A10 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chr21:31,189,240...31,198,244 JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chr21:31,180,232...31,187,709
Ensembl chr21:31,183,682...31,186,010 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9367425) MGI
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr21:31,261,992...31,271,071
Ensembl chr21:31,266,459...31,268,221 		JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7913519)
(PMID:9441667)		 Ensembl
TreeGrafter
MGI		 PMID:7913519 PMID:9441667 GO_REF:0000107 GO_REF:0000118 NCBI chr21:31,241,900...31,261,900
Ensembl chr21:31,258,142...31,261,952 		JBrowse link
G HOXA4 homeobox A4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7918106)
(PMID:7628700)		 MGI
TreeGrafter		 PMID:7628700 PMID:7918106 GO_REF:0000118 NCBI chr21:31,238,087...31,240,406
Ensembl chr21:31,238,182...31,240,384 		JBrowse link
G HOXA5 homeobox A5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7901120), (PMID:9603431)
(PMID:17417799)
(PMID:17626057)		 MGI
Ensembl
TreeGrafter		 PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr21:31,224,017...31,227,819
Ensembl chr21:31,224,977...31,227,994 		JBrowse link
G HOXA9 homeobox A9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8625797)
(PMID:17626057)
(PMID:9013929)		 MGI
TreeGrafter
Ensembl		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr21:31,199,573...31,206,455
Ensembl chr21:31,203,422...31,206,433 		JBrowse link
G HOXB1 homeobox B1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10885747)
(PMID:10529420)		 MGI
Ensembl		 PMID:10529420 PMID:10885747 GO_REF:0000107 NCBI chr16:68,940,726...68,945,153
Ensembl chr16:68,941,746...68,943,111 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9012503)
(PMID:10885747)		 Ensembl
MGI		 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr16:68,955,651...68,958,422
Ensembl chr16:68,956,061...68,957,903 		JBrowse link
G HOXB3 homeobox B3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9441667)
(PMID:10885747)		 MGI
Ensembl
TreeGrafter		 PMID:9441667 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr16:68,961,877...69,003,718
Ensembl chr16:68,963,358...68,965,498 		JBrowse link
G HOXB4 homeobox B4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:7628700)
(PMID:9012503)		 Ensembl
TreeGrafter
MGI		 PMID:7628700 PMID:9012503 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr16:68,988,621...68,991,574
Ensembl chr16:68,989,862...68,991,455 		JBrowse link
G HOXB5 homeobox B5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:7828847)
(PMID:17626057)		 Ensembl
TreeGrafter
MGI		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr16:69,004,385...69,008,789
Ensembl chr16:69,004,251...69,006,827 		JBrowse link
G HOXB6 homeobox B6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17626057)
(PMID:10885747)
(PMID:7828847)		 MGI
TreeGrafter
Ensembl		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr16:69,008,887...69,018,092
Ensembl chr16:69,009,520...69,011,245 		JBrowse link
G HOXB7 homeobox B7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:9784603)		 Ensembl
TreeGrafter
MGI		 PMID:9784603 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr16:69,020,325...69,024,362
Ensembl chr16:69,020,906...69,023,671 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311170)
(PMID:14623233)
(PMID:10559485), (PMID:11311170)
(PMID:10885747)		 Ensembl
MGI		 PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 GO_REF:0000107 NCBI chr16:69,025,089...69,027,937
Ensembl chr16:69,025,040...69,028,392 		JBrowse link
G HOXB9 homeobox B9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9013929)
(PMID:10885747)
(PMID:17626057)		 MGI
Ensembl
TreeGrafter		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr16:69,027,926...69,047,020
Ensembl chr16:69,035,701...69,039,069 		JBrowse link
G HOXC10 homeobox C10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chr11:50,092,230...50,100,934
Ensembl chr11:50,095,810...50,100,940 		JBrowse link
G HOXC11 homeobox C11 involved_in IEA Ensembl GO_REF:0000107
G HOXC13 homeobox C13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9420327) MGI
Ensembl		 PMID:9420327 GO_REF:0000107 NCBI chr11:50,039,034...50,057,178
Ensembl chr11:50,049,509...50,055,895 		JBrowse link
G HOXC4 homeobox C4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8660891)
(PMID:8626021)		 MGI
Ensembl
TreeGrafter		 PMID:8626021 PMID:8660891 GO_REF:0000107 GO_REF:0000118 NCBI chr11:50,127,573...50,167,077
Ensembl chr11:50,164,980...50,166,267 		JBrowse link
G HOXC5 homeobox C5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17626057) Ensembl
TreeGrafter
MGI		 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr11:50,141,814...50,146,089
Ensembl chr11:50,143,849...50,146,080 		JBrowse link
G HOXC6 homeobox C6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17626057) MGI
TreeGrafter
Ensembl		 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr11:50,127,573...50,141,549
Ensembl chr11:50,139,258...50,140,695 		JBrowse link
G HOXC8 homeobox C8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311170) Ensembl
MGI		 PMID:11311170 GO_REF:0000107 NCBI chr11:50,119,515...50,123,276
Ensembl chr11:50,119,932...50,123,411 		JBrowse link
G HOXC9 homeobox C9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7547473)
(PMID:17626057)		 MGI
Ensembl
TreeGrafter		 PMID:7547473 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr11:50,110,729...50,113,986
Ensembl chr11:50,110,753...50,113,975 		JBrowse link
G HOXD10 homeobox D10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12869760)
(PMID:10642795)		 MGI
Ensembl		 PMID:10642795 PMID:12869760 GO_REF:0000107 NCBI chr10:61,686,868...61,694,965
Ensembl chr10:61,691,797...61,694,415 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chr10:61,681,474...61,693,974
Ensembl chr10:61,682,400...61,684,168 		JBrowse link
G HOXD13 homeobox D13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8106170) Ensembl
MGI		 PMID:8106170 GO_REF:0000107 NCBI chr10:61,662,670...61,670,955
Ensembl chr10:61,667,880...61,669,743 		JBrowse link
G HOXD3 homeobox D3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9441667)
(PMID:7913519)
(PMID:7910549), (PMID:7913519)		 MGI
TreeGrafter
Ensembl		 PMID:7910549 PMID:7913519 PMID:9441667 GO_REF:0000107 GO_REF:0000118 NCBI chr10:61,739,589...61,754,845
Ensembl chr10:61,744,967...61,748,121 		JBrowse link
G HOXD4 homeobox D4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7628700)
(PMID:7750651)		 MGI
Ensembl
TreeGrafter		 PMID:7628700 PMID:7750651 GO_REF:0000107 GO_REF:0000118 NCBI chr10:61,719,985...61,731,371
Ensembl chr10:61,727,026...61,728,332 		JBrowse link
G HOXD8 homeobox D8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311170) Ensembl
MGI		 PMID:11311170 GO_REF:0000107 NCBI chr10:61,704,730...61,707,706
Ensembl chr10:61,705,355...61,706,614 		JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8625797)
(PMID:17626057)
(PMID:10642795)		 Ensembl
TreeGrafter
MGI		 PMID:8625797 PMID:10642795 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr10:61,695,065...61,699,936
Ensembl chr10:61,697,271...61,699,933 		JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (PMID:16109169) MGI PMID:16109169 NCBI chr27:45,493,467...45,657,690
Ensembl chr27:45,497,352...45,657,621 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:12701101)
(PMID:15930098)		 MGI PMID:12701101 PMID:15930098 NCBI chr 3:435,649...546,661
Ensembl chr 3:436,207...546,583 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10220415) MGI PMID:10220415 NCBI chr23:35,496,770...35,554,536
Ensembl chr23:35,514,130...35,551,472 		JBrowse link
G KMT2A lysine methyltransferase 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15741318)
(PMID:16618927)		 MGI
Ensembl		 PMID:15741318 PMID:16618927 GO_REF:0000107 NCBI chr 1:109,819,748...109,912,763
Ensembl chr 1:109,853,758...109,908,113 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10498685) MGI
Ensembl		 PMID:10498685 GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LOC103216270 cytochrome P450 26A1 acts_upstream_of_or_within ISO (PMID:17067568) MGI PMID:17067568 NCBI chr 9:86,310,142...86,328,622
Ensembl chr 9:86,325,401...86,328,775 		JBrowse link
G LOC103222955 uncharacterized LOC103222955 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16399080) Ensembl
MGI		 PMID:16399080 GO_REF:0000107 NCBI chr19:4,855,633...4,889,674
Ensembl chr19:4,855,611...4,890,302 		JBrowse link
G LOC103226327 homeobox protein Hox-A6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9784603) MGI
TreeGrafter
Ensembl		 PMID:9784603 GO_REF:0000107 GO_REF:0000118 NCBI chr21:31,208,988...31,215,227
Ensembl chr21:31,221,230...31,223,278
Ensembl chr21:31,221,230...31,223,278 		JBrowse link
G LOC103238018 interferon-induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) MGI PMID:15857914 NCBI chr 1:128,309...129,543 JBrowse link
G LOC103238414 uncharacterized LOC103238414 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chr11:50,076,648...50,087,084
Ensembl chr11:50,083,893...50,086,060 		JBrowse link
G LOC103247122 cryptic protein involved_in IEA TreeGrafter GO_REF:0000118
G LOC119618102 cytochrome P450 26C1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17067568) Ensembl
MGI		 PMID:17067568 GO_REF:0000107 Ensembl chr 9:86,311,950...86,319,834 JBrowse link
G LRP5 LDL receptor related protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15142971) Ensembl
MGI		 PMID:15142971 GO_REF:0000107 NCBI chr 1:6,090,048...6,224,956
Ensembl chr 1:6,089,930...6,190,383 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:16126904)
(PMID:19795512)
(PMID:15142971)		 MGI PMID:15142971 PMID:16126904 PMID:19795512 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MLLT3 MLLT3 super elongation complex subunit involved_in IEA Ensembl GO_REF:0000107 Ensembl chr12:59,324,048...59,438,174 JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21465616) Ensembl
MGI		 PMID:21465616 GO_REF:0000107 NCBI chr27:41,028,763...41,032,676
Ensembl chr27:41,028,919...41,033,006 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr23:76,873,499...76,879,935
Ensembl chr23:76,873,669...76,879,553 		JBrowse link
G NEUROD1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16368089) Ensembl
MGI		 PMID:16368089 GO_REF:0000107 NCBI chr10:67,203,714...67,208,644
Ensembl chr10:67,205,141...67,206,211 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11418863), (PMID:15004567)
(PMID:15302604)
(PMID:11311163)
(PMID:16496285)		 MGI
Ensembl		 PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 GO_REF:0000107 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15829524) Ensembl
MGI		 PMID:15829524 GO_REF:0000107 NCBI chr29:14,889,526...14,901,848
Ensembl chr29:14,891,737...14,903,813 		JBrowse link
G OTX1 orthodenticle homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15105370) MGI
Ensembl		 PMID:15105370 GO_REF:0000107 NCBI chr14:43,959,586...43,967,194
Ensembl chr14:43,961,534...43,964,879 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:12652306)
(PMID:11412024)
(PMID:9501024)		 MGI PMID:9501024 PMID:11412024 PMID:12652306 NCBI chr24:33,975,043...33,984,816 JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15917450)
(PMID:12196586)		 MGI
Ensembl		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G PBX1 PBX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11566859) Ensembl
MGI		 PMID:11566859 GO_REF:0000107 NCBI chr25:63,990,553...64,317,901
Ensembl chr25:63,989,612...64,084,673 		JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15741318)
(PMID:8625838)		 Ensembl
MGI		 PMID:8625838 PMID:15741318 GO_REF:0000107 NCBI chr16:67,447,181...67,461,829
Ensembl chr16:67,455,292...67,460,509 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:86,907,173...87,367,935
Ensembl chr12:87,042,557...87,367,033 		JBrowse link
G PDS5A PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (PMID:19412548) MGI PMID:19412548 NCBI chr27:10,333,784...10,502,113
Ensembl chr27:10,388,334...10,487,029 		JBrowse link
G RARG retinoic acid receptor gamma acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11784046)
(PMID:11784046), (PMID:8388780)		 MGI
Ensembl		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr11:49,319,104...49,340,725
Ensembl chr11:49,319,839...49,328,656 		JBrowse link
G RING1 ring finger protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16624538)
(PMID:11060235), (PMID:16624538)		 MGI
Ensembl		 PMID:11060235 PMID:16624538 GO_REF:0000107 NCBI chr17:38,862,411...38,866,631
Ensembl chr17:38,860,729...38,866,371 		JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17215307) Ensembl
MGI		 PMID:17215307 GO_REF:0000107 NCBI chr20:91,724,068...91,890,131
Ensembl chr20:91,751,977...91,889,164 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:15741318) MGI PMID:15741318 NCBI chr10:82,901,908...82,952,094
Ensembl chr10:82,899,079...82,952,071 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467359) Ensembl
MGI		 PMID:16467359 GO_REF:0000107 NCBI chr 8:39,243,775...39,289,050
Ensembl chr 8:39,243,780...39,288,984 		JBrowse link
G SFRP2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16467359) MGI
Ensembl		 PMID:16467359 GO_REF:0000107 NCBI chr 7:100,336,442...100,345,093
Ensembl chr 7:100,336,119...100,345,086 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11118883) Ensembl
MGI		 PMID:11118883 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12842913)
(PMID:11418863), (PMID:9529255)		 MGI
Ensembl		 PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000107 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215210) Ensembl
MGI		 PMID:15215210 GO_REF:0000107 NCBI chr18:29,894,157...29,951,445
Ensembl chr18:29,897,621...29,934,478 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22987639) Ensembl
MGI		 PMID:22987639 GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15084464)
(PMID:16399080)		 MGI PMID:15084464 PMID:16399080 NCBI chr19:5,980,114...5,986,313
Ensembl chr19:5,980,587...5,987,244 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15384171) Ensembl
MGI		 PMID:15384171 GO_REF:0000107 NCBI chr13:93,854,086...93,864,910
Ensembl chr13:93,855,534...93,864,507 		JBrowse link
G TCF15 transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8955271) Ensembl
MGI		 PMID:8955271 GO_REF:0000107 NCBI chr 2:55,909,945...55,916,186
Ensembl chr 2:55,910,030...55,915,600 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16845371) MGI
Ensembl		 PMID:16845371 GO_REF:0000107 NCBI chr12:40,272,507...40,321,740
Ensembl chr12:40,276,916...40,297,372 		JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17586487) Ensembl
MGI		 PMID:17586487 GO_REF:0000107 NCBI chr18:4,622,407...4,702,267
Ensembl chr18:4,623,731...4,626,925 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19334287) MGI
Ensembl		 PMID:19334287 GO_REF:0000107 NCBI chr11:2,956,762...3,005,309
Ensembl chr11:2,956,895...3,006,735 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18849982) MGI PMID:18849982 NCBI chr20:3,521,066...3,549,301
Ensembl chr20:3,521,060...3,548,718 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:60,473,029...60,484,673 JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15148409) MGI
Ensembl		 PMID:15148409 GO_REF:0000107 NCBI chr25:1,664,316...1,675,006
Ensembl chr25:1,666,053...1,719,881 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15073149), (PMID:19795512) MGI
Ensembl		 PMID:15073149 PMID:19795512 GO_REF:0000107 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
G YY1 YY1 transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16624538) MGI
Ensembl		 PMID:16624538 GO_REF:0000107 NCBI chr24:78,199,172...78,243,081
Ensembl chr24:78,199,039...78,237,165 		JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10835630) Ensembl
MGI		 PMID:10835630 GO_REF:0000107 NCBI chr 1:105,446,067...105,648,771
Ensembl chr 1:105,449,994...105,643,344 		JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within ISO (PMID:16496285) MGI PMID:16496285 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20630950) Ensembl
MGI		 PMID:20630950 GO_REF:0000107 NCBI chr  X:60,915,796...60,939,220
Ensembl chr  X:60,915,703...60,937,677 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11029008) MGI
Ensembl		 PMID:11029008 GO_REF:0000107 NCBI chr25:1,664,316...1,675,006
Ensembl chr25:1,666,053...1,719,881 		JBrowse link
axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chr23:15,992,437...16,135,117
Ensembl chr23:16,042,287...16,137,067 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17531978) Ensembl
MGI		 PMID:17531978 GO_REF:0000107 NCBI chr13:8,516,589...8,522,224
Ensembl chr13:8,518,101...8,522,091 		JBrowse link
G WNT6 Wnt family member 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11948913) Ensembl
MGI		 PMID:11948913 GO_REF:0000107 NCBI chr10:104,759,794...104,775,642
Ensembl chr10:104,760,045...104,774,487 		JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7903221) Ensembl
MGI		 PMID:7903221 GO_REF:0000107 NCBI chr 9:68,472,640...68,479,612
Ensembl chr 9:68,475,102...68,479,595 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9367425) MGI
Ensembl		 PMID:9367425 GO_REF:0000107 NCBI chr21:31,261,992...31,271,071
Ensembl chr21:31,266,459...31,268,221 		JBrowse link
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7925021) Ensembl
MGI		 PMID:7925021 GO_REF:0000107 NCBI chr 2:23,092,547...23,097,721
Ensembl chr 2:23,094,713...23,095,684 		JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZIC2 Zic family member 2 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chr 3:78,631,556...78,637,422
Ensembl chr 3:78,631,530...78,636,548 		JBrowse link
G ZIC3 Zic family member 3 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRG1 adhesion G protein-coupled receptor G1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24531968) Ensembl
MGI		 PMID:24531968 GO_REF:0000107 NCBI chr 5:43,559,792...43,595,906
Ensembl chr 5:43,570,189...43,596,087 		JBrowse link
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:23431145) MGI PMID:23431145 NCBI chr 8:60,476,555...60,483,693
Ensembl chr 8:60,480,825...60,481,976 		JBrowse link
G DMRTA2 DMRT like family A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22923088)
(PMID:23056351)		 Ensembl
MGI		 PMID:22923088 PMID:23056351 GO_REF:0000107 NCBI chr20:82,489,938...82,496,302
Ensembl chr20:82,492,299...82,495,173 		JBrowse link
G EMX1 empty spiracles homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15147765) MGI
Ensembl		 PMID:15147765 GO_REF:0000107 NCBI chr14:34,232,425...34,250,807
Ensembl chr14:34,232,819...34,249,253 		JBrowse link
G EMX2 empty spiracles homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12764040)
(PMID:15147765)		 Ensembl
MGI		 PMID:12764040 PMID:15147765 GO_REF:0000107 NCBI chr 9:110,347,043...110,353,647
Ensembl chr 9:110,347,379...110,353,643 		JBrowse link
G EOMES eomesodermin acts_upstream_of_or_within
involved_in		 ISO (PMID:23431145)
(PMID:30186101)		 MGI PMID:23431145 PMID:30186101 NCBI chr15:72,257,626...72,264,563 JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (PMID:17828260) MGI PMID:17828260 NCBI chr 4:87,463,514...87,475,900
Ensembl chr 4:87,466,249...87,475,112 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12764040)
(PMID:23431145)		 MGI
Ensembl		 PMID:12764040 PMID:23431145 GO_REF:0000107 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G TRA2B transformer 2 beta homolog acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24586484) MGI
Ensembl		 PMID:24586484 GO_REF:0000107 NCBI chr15:3,493,287...3,514,421
Ensembl chr15:3,493,541...3,513,994 		JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chr13:97,928,480...97,936,594
Ensembl chr13:97,928,634...97,936,589 		JBrowse link
G DLL3 delta like canonical Notch ligand 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12001066) Ensembl
MGI		 PMID:12001066 GO_REF:0000107 NCBI chr 6:34,102,433...34,114,558
Ensembl chr 6:34,103,854...34,114,103 		JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chr28:19,084,527...19,092,305 JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr28:19,082,864...19,091,900 JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12001066) MGI
Ensembl		 PMID:12001066 GO_REF:0000107 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18257070) Ensembl
MGI		 PMID:18257070 GO_REF:0000107 NCBI chr 8:39,243,775...39,289,050
Ensembl chr 8:39,243,780...39,288,984 		JBrowse link
detection of nodal flow term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chr21:10,850,618...11,030,099 JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chr 7:36,369,226...36,445,713
Ensembl chr 7:36,369,524...36,443,612 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31887266) Ensembl
MGI		 PMID:31887266 GO_REF:0000107 NCBI chr16:7,554,771...7,558,413
Ensembl chr16:7,555,009...7,557,085 		JBrowse link
determination of bilateral symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15731404) MGI
Ensembl		 PMID:15731404 GO_REF:0000107 NCBI chr26:25,439,159...25,557,199
Ensembl chr26:25,439,360...25,557,202 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:8,730,456...8,789,379
Ensembl chr15:8,731,278...8,788,523 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:72,004,087...72,061,889 JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:69,554,454...69,586,476
Ensembl chr 5:69,554,578...69,586,365 		JBrowse link
G DNAAF19 dynein axonemal assembly factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:61,502,337...61,505,872
Ensembl chr16:61,502,495...61,505,668 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18043505) Ensembl
MGI		 PMID:18043505 GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,859,301...64,865,676
Ensembl chr12:64,860,958...64,863,544 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) BHF-UCL PMID:9660951 NCBI chr26:50,152,097...50,169,760 JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 Ensembl chr26:50,155,496...50,156,047 JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:77,600,306...77,724,090
Ensembl chr25:77,602,803...77,603,309 		JBrowse link
G NBL1 NBL1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:112,893,928...112,908,041
Ensembl chr20:112,893,633...112,897,355 		JBrowse link
determination of heart left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15750185) Ensembl
MGI		 PMID:15750185 GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G DAND5 DAN domain BMP antagonist family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:11,648,881...11,652,815
Ensembl chr 6:11,649,331...11,652,567 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11076684) Ensembl
MGI		 PMID:11076684 GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9576835) Ensembl
MGI		 PMID:9576835 GO_REF:0000107 NCBI chr 7:119,635,697...119,639,415
Ensembl chr 7:119,634,741...119,638,546 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18043505) Ensembl
MGI		 PMID:18043505 GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G MMP21 matrix metallopeptidase 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:118,387,926...118,400,048
Ensembl chr 9:118,389,666...118,398,807 		JBrowse link
G ODAD3 outer dynein arm docking complex subunit 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25192045) Ensembl
MGI		 PMID:25192045 GO_REF:0000107 NCBI chr 6:10,349,063...10,360,292
Ensembl chr 6:10,349,069...10,360,250 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10349618) Ensembl
MGI		 PMID:10349618 GO_REF:0000107 NCBI chr13:93,854,086...93,864,910
Ensembl chr13:93,855,534...93,864,507 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:57,550,878...57,629,106
Ensembl chr15:57,551,189...57,592,661 		JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G DAND5 DAN domain BMP antagonist family member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:11,648,881...11,652,815
Ensembl chr 6:11,649,331...11,652,567 		JBrowse link
G NODAL nodal growth differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMAD2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
determination of left/right asymmetry in nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH11 dynein axonemal heavy chain 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18414654) MGI
Ensembl		 PMID:18414654 GO_REF:0000107 NCBI chr21:36,350,606...36,722,018
Ensembl chr21:36,350,707...36,720,511 		JBrowse link
G ZIC3 Zic family member 3 involved_in ISO (PMID:11959836) UniProt PMID:11959836 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
determination of left/right symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15531373) MGI
Ensembl		 PMID:15531373 GO_REF:0000107 NCBI chr10:43,139,396...43,281,024
Ensembl chr10:43,139,528...43,281,177 		JBrowse link
G ACVR1C activin A receptor type 1C NOT|acts_upstream_of_or_within ISO (PMID:15485907) MGI PMID:15485907 NCBI chr10:42,935,085...43,030,581
Ensembl chr10:42,942,284...42,994,488 		JBrowse link
G ACVR2A activin A receptor type 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16991118) MGI
Ensembl		 PMID:16991118 GO_REF:0000107 NCBI chr10:33,223,902...33,311,257
Ensembl chr10:33,224,099...33,307,720 		JBrowse link
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:9242489)
(PMID:16991118)		 MGI PMID:9242489 PMID:16991118 NCBI chr15:923,222...962,438 JBrowse link
G ACVR2B activin A receptor type 2B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr15:933,070...939,419 JBrowse link
G ALG5 ALG5 dolichyl-phosphate beta-glucosyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15755804) MGI
Ensembl		 PMID:15755804 GO_REF:0000107 NCBI chr 3:15,468,291...15,519,137
Ensembl chr 3:15,468,208...15,518,941 		JBrowse link
G ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr12:40,631,235...40,695,920
Ensembl chr12:40,631,467...40,697,393 		JBrowse link
G AP1B1 adaptor related protein complex 1 subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr19:12,195,981...12,259,289
Ensembl chr19:12,195,755...12,259,272 		JBrowse link
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr22:86,648,924...86,722,006
Ensembl chr22:86,651,076...86,721,948 		JBrowse link
G BICC1 BicC family RNA binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 9:72,469,498...72,789,106
Ensembl chr 9:72,469,323...72,789,167 		JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:24947469)		 Ensembl
MGI		 PMID:24947469 PMID:25807483 GO_REF:0000107 NCBI chr27:34,625,701...34,761,873
Ensembl chr27:34,625,105...34,761,745 		JBrowse link
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:28289722)		 Ensembl
MGI		 PMID:25807483 PMID:28289722 GO_REF:0000107 NCBI chr15:8,730,456...8,789,379
Ensembl chr15:8,731,278...8,788,523 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit acts_upstream_of_or_within ISO (PMID:28182636) MGI PMID:28182636 NCBI chr16:72,004,087...72,061,889 JBrowse link
G CEP290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr11:83,420,911...83,515,466
Ensembl chr11:83,412,379...83,514,596 		JBrowse link
G CFAP53 cilia and flagella associated protein 53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:30,690,451...30,731,711
Ensembl chr18:30,691,006...30,725,354 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G CUNH1orf127 chromosome unknown C1orf127 homolog acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr20:120,776,751...120,836,716
Ensembl chr20:120,804,759...120,835,451 		JBrowse link
G DAAM2 dishevelled associated activator of morphogenesis 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24091014) MGI
Ensembl		 PMID:24091014 GO_REF:0000107 NCBI chr17:32,252,891...32,367,575
Ensembl chr17:32,255,661...32,301,176 		JBrowse link
G DAND5 DAN domain BMP antagonist family member 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15466485) Ensembl
MGI		 PMID:15466485 GO_REF:0000107 NCBI chr 6:11,648,881...11,652,815
Ensembl chr 6:11,649,331...11,652,567 		JBrowse link
G DAW1 dynein assembly factor with WD repeats 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:28289722)		 Ensembl
MGI		 PMID:25807483 PMID:28289722 GO_REF:0000107 NCBI chr10:113,890,514...113,948,610
Ensembl chr10:113,890,976...113,948,761 		JBrowse link
G DISP1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:12421714)		 MGI PMID:12421714 PMID:15755804 NCBI chr25:6,559,866...6,759,092
Ensembl chr25:6,559,862...6,575,625 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:12730124) MGI PMID:12730124 NCBI chr13:97,928,480...97,936,594
Ensembl chr13:97,928,634...97,936,589 		JBrowse link
G DNAAF19 dynein axonemal assembly factor 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:61,502,337...61,505,872
Ensembl chr16:61,502,495...61,505,668 		JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:23872636)
(PMID:25807483)		 UniProt
MGI		 PMID:23872636 PMID:25807483 NCBI chr26:27,946,092...28,024,495 JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr26:27,960,224...28,013,105 JBrowse link
G DNAH11 dynein axonemal heavy chain 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12142464), (PMID:18022865), (PMID:22184204), (PMID:22499950)
(PMID:9353118)
(PMID:27340223)
(PMID:10556073)
(PMID:25807483)		 SYSCILIA_CCNET
Ensembl
MGI		 PMID:9353118 PMID:10556073 PMID:12142464 PMID:18022865 PMID:22184204 More... GO_REF:0000107 MGI:48750 NCBI chr21:36,350,606...36,722,018
Ensembl chr21:36,350,707...36,720,511 		JBrowse link
G DNAH5 dynein axonemal heavy chain 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11788826), (PMID:17515466), (PMID:22499950)
(PMID:25807483)
(PMID:28289722)
(PMID:11912187)		 SYSCILIA_CCNET
Ensembl
MGI		 PMID:11788826 PMID:11912187 PMID:17515466 PMID:22499950 PMID:25807483 More... GO_REF:0000107 NCBI chr 4:13,401,980...13,718,900
Ensembl chr 4:13,401,092...13,652,755 		JBrowse link
G DNAI1 dynein axonemal intermediate chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:11231901), (PMID:17515466), (PMID:22499950)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:11231901 PMID:17515466 PMID:22499950 PMID:25807483 GO_REF:0000107 NCBI chr12:46,058,280...46,155,989
Ensembl chr12:46,090,829...46,128,839 		JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18950741) Ensembl
SYSCILIA_CCNET		 PMID:18950741 GO_REF:0000107 NCBI chr16:47,318,477...47,348,767
Ensembl chr16:47,319,138...47,348,839 		JBrowse link
G DPCD deleted in primary ciliary dyskinesia homolog (mouse) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21746835) Ensembl
MGI		 PMID:21746835 GO_REF:0000107 NCBI chr 9:94,612,383...94,633,729
Ensembl chr 9:94,612,460...94,633,537 		JBrowse link
G DRC1 dynein regulatory complex subunit 1 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr14:81,188,261...81,245,064 JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804), (PMID:16061793)
(PMID:16229832), (PMID:25807483)		 Ensembl
MGI		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:25807483 GO_REF:0000107 NCBI chr 1:94,484,090...94,849,960
Ensembl chr 1:94,484,512...94,849,581 		JBrowse link
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15371312) Ensembl
MGI		 PMID:15371312 GO_REF:0000107 NCBI chr14:63,441,948...63,481,460
Ensembl chr14:63,440,155...63,481,479 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15329346) Ensembl
MGI		 PMID:15329346 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10411502) Ensembl
MGI		 PMID:10411502 GO_REF:0000107 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11493558) Ensembl
MGI		 PMID:11493558 GO_REF:0000107 NCBI chr 5:71,898,473...71,902,624
Ensembl chr 5:71,898,786...71,903,661 		JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12642485) Ensembl
MGI		 PMID:12642485 GO_REF:0000107 NCBI chr 8:138,685,137...138,688,451
Ensembl chr 8:138,685,626...138,687,144 		JBrowse link
G FOXJ1 forkhead box J1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr16:45,536,973...45,544,331
Ensembl chr16:45,539,510...45,544,299 		JBrowse link
G GAS8 growth arrest specific 8 acts_upstream_of_or_within ISO (PMID:27472056) MGI PMID:27472056 NCBI chr 5:75,353,493...75,370,012
Ensembl chr 5:75,354,117...75,371,796 		JBrowse link
G IFT140 intraflagellar transport 140 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25807483) MGI
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr 5:1,419,432...1,523,342
Ensembl chr 5:1,415,664...1,521,843 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr14:80,130,436...80,171,259 JBrowse link
G IFT172 intraflagellar transport 172 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:80,138,354...80,171,200 JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chr 2:20,154,246...20,211,754
Ensembl chr 2:20,152,036...20,211,682 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:10804177)		 MGI PMID:10804177 PMID:15755804 NCBI chr 3:435,649...546,661
Ensembl chr 3:436,207...546,583 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:10220415)		 MGI PMID:10220415 PMID:15755804 NCBI chr23:35,496,770...35,554,536
Ensembl chr23:35,514,130...35,551,472 		JBrowse link
G LOC103230001 left-right determination factor 1 involved_in ISO (PMID:9708732) BHF-UCL PMID:9708732 NCBI chr25:3,881,085...3,884,596
Ensembl chr25:3,881,837...3,884,151 		JBrowse link
G LOC103235293 dynein assembly factor 3, axonemal involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 6:47,753,085...47,762,340
Ensembl chr 6:47,753,062...47,762,238 		JBrowse link
G LOC103247122 cryptic protein involved_in IEA TreeGrafter GO_REF:0000118
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21045211)
(PMID:19776033)		 Ensembl
MGI		 PMID:19776033 PMID:21045211 GO_REF:0000107 NCBI chr16:35,182,276...35,196,167
Ensembl chr16:35,182,568...35,199,858 		JBrowse link
G MMP21 matrix metallopeptidase 21 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 9:118,387,926...118,400,048
Ensembl chr 9:118,389,666...118,398,807 		JBrowse link
G NEK8 NIMA related kinase 8 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr16:22,495,745...22,506,782 JBrowse link
G NEK8 NIMA related kinase 8 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:22,501,834...22,507,358 JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15329346) Ensembl
MGI		 PMID:15329346 GO_REF:0000107 NCBI chr27:36,641,837...36,647,917
Ensembl chr27:36,641,932...36,644,353 		JBrowse link
G NME7 NME/NM23 family member 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21746835) MGI
Ensembl		 PMID:21746835 GO_REF:0000107 NCBI chr25:59,685,437...59,899,458
Ensembl chr25:59,685,531...59,898,677 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12231623)
(PMID:15466485)
(PMID:16496285)
(PMID:11311163)
(PMID:12642485), (PMID:12654299)
(PMID:28182636)		 MGI
Ensembl		 PMID:11311163 PMID:12231623 PMID:12642485 PMID:12654299 PMID:15466485 More... GO_REF:0000107 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G NOTCH1 notch receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7789282)
(PMID:12730124)		 MGI
Ensembl		 PMID:7789282 PMID:12730124 GO_REF:0000107 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
G NOTCH2 notch receptor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12730124) MGI
Ensembl		 PMID:12730124 GO_REF:0000107 NCBI chr20:13,712,140...13,871,777
Ensembl chr20:13,712,292...13,871,784 		JBrowse link
G NOTO notochord homeobox acts_upstream_of_or_within ISO (PMID:17884984), (PMID:22357932)
(PMID:20350929)		 MGI PMID:17884984 PMID:20350929 PMID:22357932 NCBI chr14:33,962,173...33,975,040 JBrowse link
G NOTO notochord homeobox involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:33,962,632...33,974,573 JBrowse link
G NPHP3 nephrocystin 3 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:57,550,878...57,629,106
Ensembl chr15:57,551,189...57,592,661 		JBrowse link
G ODAD2 outer dynein arm docking complex subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:23849778)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:23849778 PMID:25807483 GO_REF:0000107 NCBI chr 9:27,369,965...27,563,798
Ensembl chr 9:27,369,971...27,550,110 		JBrowse link
G ODAD3 outer dynein arm docking complex subunit 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31383820)
(PMID:25807483)
(PMID:25192045)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:25192045 PMID:25807483 PMID:31383820 GO_REF:0000107 NCBI chr 6:10,349,063...10,360,292
Ensembl chr 6:10,349,069...10,360,250 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25807483) MGI
Ensembl		 PMID:25807483 GO_REF:0000107 NCBI chr12:86,907,173...87,367,935
Ensembl chr12:87,042,557...87,367,033 		JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10809672) MGI
Ensembl		 PMID:10809672 GO_REF:0000107 NCBI chr29:19,758,198...19,949,875
Ensembl chr29:19,754,625...19,949,382 		JBrowse link
G PIERCE1 piercer of microtubule wall 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27305836) Ensembl
MGI		 PMID:27305836 GO_REF:0000107 NCBI chr12:2,669,623...2,674,929
Ensembl chr12:2,670,241...2,675,646 		JBrowse link
G PIERCE2 piercer of microtubule wall 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,023,735...28,029,095
Ensembl chr26:28,023,603...28,028,929 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:12397115)
(PMID:9708732)
(PMID:11493526), (PMID:24091014)
(PMID:10499586)
(PMID:10498698)
(PMID:10572050)		 MGI
BHF-UCL		 PMID:9708732 PMID:10498698 PMID:10499586 PMID:10572050 PMID:11493526 More... NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr21:10,850,618...11,030,099 JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel acts_upstream_of_or_within ISO (PMID:12062060) MGI PMID:12062060 NCBI chr 7:36,369,226...36,445,713
Ensembl chr 7:36,369,524...36,443,612 		JBrowse link
G PSKH1 protein serine kinase H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 5:59,510,587...59,543,560
Ensembl chr 5:59,512,617...59,543,497 		JBrowse link
G RFX3 regulatory factor X3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15121860) Ensembl
MGI		 PMID:15121860 GO_REF:0000107 NCBI chr12:76,039,729...76,344,936
Ensembl chr12:76,096,465...76,338,204 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17531978) Ensembl
MGI		 PMID:17531978 GO_REF:0000107 NCBI chr13:8,516,589...8,522,224
Ensembl chr13:8,518,101...8,522,091 		JBrowse link
G RPGRIP1L RPGRIP1 like acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17553904) MGI
Ensembl		 PMID:17553904 GO_REF:0000107 NCBI chr 5:39,388,632...39,487,223
Ensembl chr 5:39,387,107...39,487,092 		JBrowse link
G RTTN rotatin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11900971) Ensembl
MGI		 PMID:11900971 GO_REF:0000107 NCBI chr18:9,574,647...9,770,940
Ensembl chr18:9,575,159...9,772,596 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10385121), (PMID:10411502), (PMID:10500184) Ensembl
MGI		 PMID:10385121 PMID:10411502 PMID:10500184 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804)
(PMID:12421714)		 Ensembl
MGI		 PMID:12421714 PMID:15755804 GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr20:85,600,171...85,662,732
Ensembl chr20:85,604,539...85,662,333 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16155214) Ensembl
MGI		 PMID:16155214 GO_REF:0000107 NCBI chr 9:95,532,228...95,660,594
Ensembl chr 9:95,532,242...95,657,290 		JBrowse link
G TBC1D32 TBC1 domain family member 32 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr13:52,518,428...52,742,961 JBrowse link
G TBC1D32 TBC1 domain family member 32 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr13:52,519,851...52,668,754 JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16556915) MGI PMID:16556915 NCBI chr19:5,980,114...5,986,313
Ensembl chr19:5,980,587...5,987,244 		JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:16705179) MGI PMID:16705179 NCBI chr18:62,691,705...62,698,265 JBrowse link
G TMEM107 transmembrane protein 107 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31887266) Ensembl
MGI		 PMID:31887266 GO_REF:0000107 NCBI chr16:7,554,771...7,558,413
Ensembl chr16:7,555,009...7,557,085 		JBrowse link
G TMEM67 transmembrane protein 67 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr 8:88,726,783...88,818,111
Ensembl chr 8:88,726,837...88,792,049 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16291790) MGI
Ensembl		 PMID:16291790 GO_REF:0000107 NCBI chr25:1,664,316...1,675,006
Ensembl chr25:1,666,053...1,719,881 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24091014) MGI
Ensembl		 PMID:24091014 GO_REF:0000107 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
G ZIC3 Zic family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16496285)
(PMID:15384171)		 Ensembl
MGI		 PMID:15384171 PMID:16496285 GO_REF:0000107 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:8,730,456...8,789,379
Ensembl chr15:8,731,278...8,788,523 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:72,004,087...72,061,889 JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:69,554,454...69,586,476
Ensembl chr 5:69,554,578...69,586,365 		JBrowse link
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:57,550,878...57,629,106
Ensembl chr15:57,551,189...57,592,661 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:36,369,226...36,445,713
Ensembl chr 7:36,369,524...36,443,612 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
determination of pancreatic left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:8,730,456...8,789,379
Ensembl chr15:8,731,278...8,788,523 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:72,004,087...72,061,889 JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:69,554,454...69,586,476
Ensembl chr 5:69,554,578...69,586,365 		JBrowse link
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:57,550,878...57,629,106
Ensembl chr15:57,551,189...57,592,661 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:57,550,878...57,629,106
Ensembl chr15:57,551,189...57,592,661 		JBrowse link
determination of ventral identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIDA axin interactor, dorsalization associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:6,858,138...6,900,064
Ensembl chr25:6,858,152...6,898,175 		JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10330403) MGI
Ensembl		 PMID:10330403 GO_REF:0000107 NCBI chr 5:233,520...295,134
Ensembl chr 5:234,060...290,575 		JBrowse link
G AXIN2 axin 2 ISO RGD PMID:9566905 RGD:68736 NCBI chr16:55,874,043...55,906,739
Ensembl chr16:55,874,072...55,907,281 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12923052) Ensembl
MGI		 PMID:12923052 GO_REF:0000107 NCBI chr 9:44,944,463...45,108,832
Ensembl chr 9:44,941,460...45,027,275 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12923052) Ensembl
MGI		 PMID:12923052 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738) MGI PMID:18985738 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MDFI MyoD family inhibitor involved_in ISO (PMID:11238923) UniProt PMID:11238923 NCBI chr17:30,508,354...30,526,065
Ensembl chr17:30,509,047...30,524,024 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10588713) MGI
Ensembl		 PMID:10588713 GO_REF:0000107 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G SENP2 SUMO specific peptidase 2 ISO RGD PMID:10944533 RGD:1299408 NCBI chr15:3,805,916...3,853,529 JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:39,243,775...39,289,050
Ensembl chr 8:39,243,780...39,288,984 		JBrowse link
G VAX2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11830578)
(PMID:11830579)		 Ensembl
MGI		 PMID:11830578 PMID:11830579 GO_REF:0000107 NCBI chr14:36,180,084...36,213,534
Ensembl chr14:36,180,324...36,213,439 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:60,473,029...60,484,673 JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15218525) MGI
Ensembl		 PMID:15218525 GO_REF:0000107 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18003640)
(PMID:18590716)		 Ensembl
MGI		 PMID:18003640 PMID:18590716 GO_REF:0000107 NCBI chr 6:17,007,764...17,018,409
Ensembl chr 6:17,007,390...17,017,714 		JBrowse link
G FOXA1 forkhead box A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23383217) Ensembl
MGI		 PMID:23383217 GO_REF:0000107 NCBI chr24:14,397,759...14,403,078
Ensembl chr24:14,396,702...14,403,094 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:9226455)
(PMID:18590716)
(PMID:23383217)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504941)
(PMID:17504940), (PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chr12:97,590,381...97,593,209
Ensembl chr12:97,591,762...97,592,805 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18590716), (PMID:19286674)
(PMID:9247260)		 MGI
Ensembl		 PMID:9247260 PMID:18590716 PMID:19286674 GO_REF:0000107 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GSC goosecoid homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9226455) Ensembl
MGI		 PMID:9226455 GO_REF:0000107 NCBI chr24:72,581,639...72,585,745
Ensembl chr24:72,581,915...72,583,423 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in		 ISO (PMID:18590716), (PMID:19286674)
(PMID:21209331)		 MGI
BHF-UCL		 PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr23:35,496,770...35,554,536
Ensembl chr23:35,514,130...35,551,472 		JBrowse link
G LOC103219825 protein patched homolog 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9262482) MGI
Ensembl		 PMID:9262482 GO_REF:0000107 NCBI chr12:107,580,895...107,656,443
Ensembl chr12:107,590,663...107,652,985 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr21:125,132,517...125,138,520
Ensembl chr21:125,133,194...125,138,217 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr20:113,810,646...113,929,136
Ensembl chr20:113,823,392...113,928,548 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557208) Ensembl
MGI		 PMID:10557208 GO_REF:0000107 NCBI chr24:50,394,310...50,476,521
Ensembl chr24:50,405,590...50,472,132 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chr25:2,862,354...2,888,735
Ensembl chr25:2,862,251...2,877,386 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) UniProt PMID:7720556 NCBI chr17:14,383,064...14,418,144
Ensembl chr17:14,383,155...14,414,698 		JBrowse link
G RNF220 ring finger protein 220 acts_upstream_of_or_within ISO (PMID:30177510) MGI PMID:30177510 NCBI chr20:88,134,359...88,387,402 JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17504941)
(PMID:17442700), (PMID:18590716)		 Ensembl
MGI		 PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18590716) Ensembl
MGI		 PMID:18590716 GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16357211) Ensembl
MGI		 PMID:16357211 GO_REF:0000107 NCBI chr11:105,855,138...105,898,764
Ensembl chr11:105,855,288...105,891,093 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19286674) MGI
Ensembl		 PMID:19286674 GO_REF:0000107 NCBI chr11:2,956,762...3,005,309
Ensembl chr11:2,956,895...3,006,735 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8299937) MGI
Ensembl		 PMID:8299937 GO_REF:0000107 NCBI chr25:1,664,316...1,675,006
Ensembl chr25:1,666,053...1,719,881 		JBrowse link
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chr23:15,992,437...16,135,117
Ensembl chr23:16,042,287...16,137,067 		JBrowse link
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr22:86,648,924...86,722,006
Ensembl chr22:86,651,076...86,721,948 		JBrowse link
G AXIN1 axin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18316368) MGI
Ensembl		 PMID:18316368 GO_REF:0000107 NCBI chr 5:233,520...295,134
Ensembl chr 5:234,060...290,575 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15673568) Ensembl
MGI		 PMID:15673568 GO_REF:0000107 NCBI chr 9:44,944,463...45,108,832
Ensembl chr 9:44,941,460...45,027,275 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 7:43,349,364...43,397,745 JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (PMID:15673568) MGI PMID:15673568
G CHRD chordin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12810603) MGI
TreeGrafter		 PMID:12810603 GO_REF:0000118 NCBI chr15:5,030,618...5,040,399
Ensembl chr15:5,030,457...5,039,991 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15708565) Ensembl
MGI		 PMID:15708565 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G DISP1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr25:6,559,866...6,759,092
Ensembl chr25:6,559,862...6,575,625 		JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16229832)
(PMID:15755804), (PMID:16061793)
(PMID:21552265)		 Ensembl
MGI		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 GO_REF:0000107 NCBI chr 1:94,484,090...94,849,960
Ensembl chr 1:94,484,512...94,849,581 		JBrowse link
G EDN1 endothelin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15110048) MGI
Ensembl		 PMID:15110048 GO_REF:0000107 NCBI chr17:59,854,186...59,861,319
Ensembl chr17:59,853,699...59,861,198 		JBrowse link
G EN1 engrailed homeobox 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr10:11,475,221...11,479,475 JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15105374) Ensembl
MGI		 PMID:15105374 GO_REF:0000107 NCBI chr 6:17,007,764...17,018,409
Ensembl chr 6:17,007,390...17,017,714 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr 2:51,577,127...51,585,168
Ensembl chr 2:51,577,833...51,580,297 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940) MGI PMID:17504940 NCBI chr12:97,590,381...97,593,209
Ensembl chr12:97,591,762...97,592,805 		JBrowse link
G GLI1 GLI family zinc finger 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16342201) MGI
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr11:53,371,929...53,384,339
Ensembl chr11:53,375,558...53,385,269 		JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16342201) MGI
Ensembl		 PMID:16342201 GO_REF:0000107 NCBI chr10:9,302,890...9,561,287
Ensembl chr10:9,304,645...9,369,115 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14723851)
(PMID:12435629), (PMID:16571630)		 Ensembl
MGI		 PMID:12435629 PMID:14723851 PMID:16571630 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G HHIP hedgehog interacting protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15576403) Ensembl
MGI		 PMID:15576403 GO_REF:0000107 NCBI chr 7:91,216,874...91,311,392
Ensembl chr 7:91,216,955...91,310,387 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11493536) Ensembl
MGI		 PMID:11493536 GO_REF:0000107 NCBI chr21:31,180,232...31,187,709
Ensembl chr21:31,183,682...31,186,010 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10230789) MGI
Ensembl		 PMID:10230789 GO_REF:0000107 NCBI chr21:31,261,992...31,271,071
Ensembl chr21:31,266,459...31,268,221 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10230789) Ensembl
MGI		 PMID:10230789 GO_REF:0000107 NCBI chr16:68,955,651...68,958,422
Ensembl chr16:68,956,061...68,957,903 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chr10:61,681,474...61,693,974
Ensembl chr10:61,682,400...61,684,168 		JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:21552265)		 MGI PMID:15755804 PMID:21552265 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:14603322), (PMID:15755804), (PMID:21552265)
(PMID:16061793)		 MGI PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 NCBI chr14:80,130,436...80,171,259 JBrowse link
G IFT172 intraflagellar transport 172 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:80,138,354...80,171,200 JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chr 2:20,154,246...20,211,754
Ensembl chr 2:20,152,036...20,211,682 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15755804), (PMID:15930098) MGI PMID:15755804 PMID:15930098 NCBI chr 3:435,649...546,661
Ensembl chr 3:436,207...546,583 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr23:35,496,770...35,554,536
Ensembl chr23:35,514,130...35,551,472 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10498685) MGI
Ensembl		 PMID:10498685 GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LHX2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11165475), (PMID:14566948) Ensembl
MGI		 PMID:11165475 PMID:14566948 GO_REF:0000107 NCBI chr12:14,110,122...14,133,411
Ensembl chr12:14,110,068...14,132,026 		JBrowse link
G LHX3 LIM homeobox 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18037398) MGI
Ensembl		 PMID:18037398 GO_REF:0000107 NCBI chr12:1,997,437...2,007,473
Ensembl chr12:2,000,638...2,006,430 		JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta involved_in ISO (PMID:10767331) UniProt PMID:10767331 NCBI chr12:11,443,253...11,526,789
Ensembl chr12:11,444,324...11,526,552 		JBrowse link
G LOC103216935 uncharacterized LOC103216935 acts_upstream_of_or_within ISO (PMID:8684466), (PMID:9362463) MGI PMID:8684466 PMID:9362463 NCBI chr10:11,470,295...11,558,688
Ensembl chr10:11,475,221...11,479,475 		JBrowse link
G LOC103219825 protein patched homolog 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15576403) MGI
Ensembl		 PMID:15576403 GO_REF:0000107 NCBI chr12:107,580,895...107,656,443
Ensembl chr12:107,590,663...107,652,985 		JBrowse link
G LRP4 LDL receptor related protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16207730)
(PMID:17119023)		 Ensembl
MGI		 PMID:16207730 PMID:17119023 GO_REF:0000107 NCBI chr 1:18,393,489...18,474,514
Ensembl chr 1:18,413,513...18,471,444 		JBrowse link
G NOG noggin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:36,816,783...36,818,693
Ensembl chr16:36,817,476...36,818,174 		JBrowse link
G NOTO notochord homeobox acts_upstream_of_or_within ISO (PMID:8155581) MGI PMID:8155581 NCBI chr14:33,962,173...33,975,040 JBrowse link
G NOTO notochord homeobox involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:33,962,632...33,974,573 JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:12652306) MGI PMID:12652306 NCBI chr24:33,975,043...33,984,816 JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16423343) Ensembl
MGI		 PMID:16423343 GO_REF:0000107 NCBI chr 2:47,082,294...47,118,880
Ensembl chr 2:47,082,167...47,117,521 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15548580)
(PMID:15878992)		 MGI
Ensembl		 PMID:15548580 PMID:15878992 GO_REF:0000107 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G PROP1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:12183375)
(PMID:15459176)		 MGI PMID:12183375 PMID:15459176 NCBI chr23:79,704,746...79,710,013
Ensembl chr23:79,705,287...79,708,566 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804)
(PMID:16571630)		 Ensembl
MGI		 PMID:15755804 PMID:16571630 GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G SP8 Sp8 transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14597661) Ensembl
MGI		 PMID:14597661 GO_REF:0000107 NCBI chr21:37,453,667...37,467,434
Ensembl chr21:37,462,097...37,464,588 		JBrowse link
G TBX20 T-box transcription factor 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15901664) Ensembl
MGI		 PMID:15901664 GO_REF:0000107 NCBI chr21:23,166,020...23,222,416
Ensembl chr21:23,166,109...23,224,657 		JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:17082251) MGI PMID:17082251 NCBI chr18:62,691,705...62,698,265 JBrowse link
G WNT7A Wnt family member 7A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7885472), (PMID:9362463) Ensembl
MGI		 PMID:7885472 PMID:9362463 GO_REF:0000107 NCBI chr22:49,805,415...49,863,115
Ensembl chr22:49,805,463...49,862,830 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chr15:5,030,618...5,040,399
Ensembl chr15:5,030,457...5,039,991 		JBrowse link
G CHRDL1 chordin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:98,490,291...98,611,811
Ensembl chr  X:98,489,874...98,611,951 		JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:62,126,383...62,131,919
Ensembl chr  X:62,126,320...62,130,220 		JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:7,501,647...7,803,175
Ensembl chr21:7,598,126...7,803,177 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G FRAT1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (PMID:10534617) MGI PMID:10534617 NCBI chr 9:90,491,841...90,495,112
Ensembl chr 9:90,492,722...90,493,561 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:93,545,792...93,553,092
Ensembl chr10:93,550,189...93,551,946 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr20:85,600,171...85,662,732
Ensembl chr20:85,604,539...85,662,333 		JBrowse link
G WNT1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,217,402...45,222,996
Ensembl chr11:45,219,027...45,222,017 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:49,805,415...49,863,115
Ensembl chr22:49,805,463...49,862,830 		JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16314491) Ensembl
MGI		 PMID:16314491 GO_REF:0000107 NCBI chr 2:31,349,394...31,361,227
Ensembl chr 2:31,348,808...31,360,901 		JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15363409) Ensembl
MGI		 PMID:15363409 GO_REF:0000107 NCBI chr 8:138,685,137...138,688,451
Ensembl chr 8:138,685,626...138,687,144 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136932) MGI PMID:9136932 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CIMAP3 ciliary microtubule associated protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20643351) MGI
Ensembl		 PMID:20643351 GO_REF:0000107 NCBI chr20:22,250,933...22,269,420
Ensembl chr20:22,249,682...22,256,695 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (PMID:21209331) CACAO PMID:21209331 NCBI chr22:51,528,383...51,616,757
Ensembl chr22:51,528,254...51,616,682 		JBrowse link
G INVS inversin acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chr12:39,138,586...39,333,758
Ensembl chr12:39,139,505...39,333,661 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G NKX2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9192865) Ensembl
MGI		 PMID:9192865 GO_REF:0000107 NCBI chr23:75,391,833...75,399,003
Ensembl chr23:75,391,847...75,395,205 		JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:17234970) BHF-UCL PMID:17234970 NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10049573) Ensembl
MGI		 PMID:10049573 GO_REF:0000107 NCBI chr 2:6,856,396...6,954,948
Ensembl chr 2:6,856,453...6,954,944 		JBrowse link
G DISP1 dispatched RND transporter family member 1 acts_upstream_of_or_within ISO (PMID:12372301) MGI PMID:12372301 NCBI chr25:6,559,866...6,759,092
Ensembl chr25:6,559,862...6,575,625 		JBrowse link
G DOP1B DOP1 leucine zipper like protein B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:80,173,127...80,290,958
Ensembl chr 2:80,173,073...80,289,043 		JBrowse link
G EFNB1 ephrin B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15037550) Ensembl
MGI		 PMID:15037550 GO_REF:0000107 NCBI chr  X:58,668,572...58,681,583
Ensembl chr  X:58,668,581...58,681,855 		JBrowse link
G ERBB4 erb-b2 receptor tyrosine kinase 4 involved_in ISO (PMID:10655590) UniProt PMID:10655590 NCBI chr10:97,099,090...98,281,697 JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16618415)
(PMID:17522155)		 Ensembl
MGI		 PMID:16618415 PMID:17522155 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16618415) MGI PMID:16618415 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10529425) MGI
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G NANOG Nanog homeobox involved_in ISO (PMID:15108323) HGNC-UCL PMID:15108323 NCBI chr11:7,813,309...7,820,009 JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11311163) MGI
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G NOTO notochord homeobox acts_upstream_of_or_within ISO (PMID:15550757) MGI PMID:15550757 NCBI chr14:33,962,173...33,975,040 JBrowse link
G NOTO notochord homeobox involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:33,962,632...33,974,573 JBrowse link
G OOEP oocyte expressed protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18191828) MGI
TreeGrafter		 PMID:18191828 GO_REF:0000118 NCBI chr17:1,775,192...1,777,214
Ensembl chr17:1,775,955...1,776,982 		JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr10:82,355,983...82,440,925
Ensembl chr10:82,364,219...82,439,278 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr  X:94,730,880...94,733,060 JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:8,516,589...8,522,224
Ensembl chr13:8,518,101...8,522,091 		JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16751105) Ensembl
MGI		 PMID:16751105 GO_REF:0000107 NCBI chr10:84,761,450...84,954,339
Ensembl chr10:84,761,426...84,954,361 		JBrowse link
G SIM2 SIM bHLH transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12024028) Ensembl
MGI		 PMID:12024028 GO_REF:0000107 NCBI chr 2:80,680,061...80,730,331
Ensembl chr 2:80,680,678...80,725,951 		JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15183723) MGI
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr18:33,017,138...33,105,320
Ensembl chr18:33,017,492...33,104,606 		JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15183723) MGI
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:17984226) MGI PMID:17984226 NCBI chr17:61,750,757...61,769,041 JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10835630) Ensembl
MGI		 PMID:10835630 GO_REF:0000107 NCBI chr 1:105,446,067...105,648,771
Ensembl chr 1:105,449,994...105,643,344 		JBrowse link
G ZIC3 Zic family member 3 involved_in ISO (PMID:16397896) MGI PMID:16397896 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
epithelial cilium movement involved in determination of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:8,730,456...8,789,379
Ensembl chr15:8,731,278...8,788,523 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:72,004,087...72,061,889 JBrowse link
G CFAP45 cilia and flagella associated protein 45 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:33139725) MGI
Ensembl		 PMID:33139725 GO_REF:0000107 NCBI chr20:4,036,029...4,078,608
Ensembl chr20:4,050,311...4,078,587 		JBrowse link
G CFAP53 cilia and flagella associated protein 53 acts_upstream_of_or_within ISO (PMID:33347437) MGI PMID:33347437 NCBI chr18:30,690,451...30,731,711
Ensembl chr18:30,691,006...30,725,354 		JBrowse link
G DNAAF11 dynein axonemal assembly factor 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:27353389) MGI
Ensembl		 PMID:27353389 GO_REF:0000107 NCBI chr 8:127,010,303...127,103,343
Ensembl chr 8:127,008,619...127,103,300 		JBrowse link
G DNAH11 dynein axonemal heavy chain 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10549278), (PMID:22102620) MGI
Ensembl		 PMID:10549278 PMID:22102620 GO_REF:0000107 NCBI chr21:36,350,606...36,722,018
Ensembl chr21:36,350,707...36,720,511 		JBrowse link
G INVS inversin acts_upstream_of_or_within ISO (PMID:10549278) MGI PMID:10549278 NCBI chr12:39,138,586...39,333,758
Ensembl chr12:39,139,505...39,333,661 		JBrowse link
G LOC103215146 oral-facial-digital syndrome 1 protein-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:36,086,540...36,090,236 JBrowse link
G MEGF8 multiple EGF like domains 8 NOT|acts_upstream_of_or_within ISO (PMID:18043505) MGI PMID:18043505 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G ODAD3 outer dynein arm docking complex subunit 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31383820) Ensembl
MGI		 PMID:31383820 GO_REF:0000107 NCBI chr 6:10,349,063...10,360,292
Ensembl chr 6:10,349,069...10,360,250 		JBrowse link
G ODAD4 outer dynein arm docking complex subunit 4 involved_in
acts_upstream_of_or_within		 ISO (PMID:27486780) GO_Central
MGI		 PMID:27486780 NCBI chr16:64,297,983...64,333,421 JBrowse link
G ODAD4 outer dynein arm docking complex subunit 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:64,323,294...64,333,138 JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:12,222,396...12,256,802
Ensembl chr  X:12,222,760...12,256,557 		JBrowse link
G RFX3 regulatory factor X3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:76,039,729...76,344,936
Ensembl chr12:76,096,465...76,338,204 		JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TTC8 tetratricopeptide repeat domain 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:66,483,808...66,539,717
Ensembl chr24:66,483,864...66,539,142 		JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRX4 iroquois homeobox 4 ISO RGD PMID:10882515 RGD:1582291 NCBI chr 4:1,712,382...1,723,284
Ensembl chr 4:1,718,737...1,723,403 		JBrowse link
G WNT8A Wnt family member 8A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16256739) MGI
Ensembl		 PMID:16256739 GO_REF:0000107 NCBI chr23:40,750,907...40,759,421
Ensembl chr23:40,751,780...40,758,790 		JBrowse link
establishment of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29317443) Ensembl
MGI		 PMID:29317443 GO_REF:0000107 NCBI chr15:8,730,456...8,789,379
Ensembl chr15:8,731,278...8,788,523 		JBrowse link
G CFAP45 cilia and flagella associated protein 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:4,036,029...4,078,608
Ensembl chr20:4,050,311...4,078,587 		JBrowse link
G CFAP52 cilia and flagella associated protein 52 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:8,937,515...9,000,363
Ensembl chr16:8,938,143...9,001,677 		JBrowse link
G DNAAF2 dynein axonemal assembly factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:31107948)
(PMID:23525783)		 MGI
Ensembl		 PMID:23525783 PMID:31107948 GO_REF:0000107 NCBI chr24:26,665,286...26,674,345
Ensembl chr24:26,665,106...26,674,063 		JBrowse link
G ENKUR enkurin, TRPC channel interacting protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:29257953) MGI
Ensembl		 PMID:29257953 GO_REF:0000107 NCBI chr 9:24,710,588...24,740,173
Ensembl chr 9:24,707,109...24,740,516 		JBrowse link
G PIERCE1 piercer of microtubule wall 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,669,623...2,674,929
Ensembl chr12:2,670,241...2,675,646 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16720875) Ensembl
MGI		 PMID:16720875 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16720875) MGI PMID:16720875 NCBI chr 9:114,234,344...114,354,736
Ensembl chr 9:114,234,250...114,354,704 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FEZF1 FEZ family zinc finger 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16971467) MGI
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chr21:91,099,660...91,110,242
Ensembl chr21:91,100,346...91,102,767 		JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16971467) Ensembl
MGI		 PMID:16971467 GO_REF:0000107 NCBI chr22:23,442,699...23,453,026
Ensembl chr22:23,443,114...23,445,908 		JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:18094027) MGI PMID:18094027 NCBI chr14:62,278,124...62,292,942
Ensembl chr14:62,278,461...62,281,127 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18094027) Ensembl
MGI		 PMID:18094027 GO_REF:0000107 NCBI chr11:45,217,402...45,222,996
Ensembl chr11:45,219,027...45,222,017 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16613831) Ensembl
MGI		 PMID:16613831 GO_REF:0000107 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10625551) Ensembl
MGI		 PMID:10625551 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11060228), (PMID:11124115), (PMID:18701439) Ensembl
MGI		 PMID:11060228 PMID:11124115 PMID:18701439 GO_REF:0000107 NCBI chr 7:14,436,848...14,446,197
Ensembl chr 7:14,439,371...14,440,944 		JBrowse link
G NKX2-1 NK2 homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10393115), (PMID:11163262), (PMID:11830575) MGI
Ensembl		 PMID:10393115 PMID:11163262 PMID:11830575 GO_REF:0000107 NCBI chr24:13,274,118...13,317,533
Ensembl chr24:13,310,846...13,317,056 		JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11050125), (PMID:18701439), (PMID:24528677)
(PMID:11124115)		 MGI
Ensembl		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
G SIX3 SIX homeobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:62,278,124...62,292,942
Ensembl chr14:62,278,461...62,281,127 		JBrowse link
G TTC21B tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19732765) Ensembl
MGI		 PMID:19732765 GO_REF:0000107 NCBI chr10:51,365,156...51,449,207
Ensembl chr10:51,364,889...51,449,183 		JBrowse link
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX1 LIM homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10529425) MGI
Ensembl		 PMID:10529425 GO_REF:0000107 NCBI chr16:30,843,062...30,850,182
Ensembl chr16:30,842,652...30,849,465 		JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr10:82,355,983...82,440,925
Ensembl chr10:82,364,219...82,439,278 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24528677) Ensembl
MGI		 PMID:24528677 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G WNT2B Wnt family member 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:21,116,310...21,129,461
Ensembl chr20:21,117,415...21,123,516 		JBrowse link
G WNT7B Wnt family member 7B involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:28,387,324...28,444,019
Ensembl chr19:28,385,422...28,441,350 		JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9169845) MGI
Ensembl		 PMID:9169845 GO_REF:0000107 NCBI chr 1:33,386,165...33,414,605
Ensembl chr 1:33,392,970...33,414,587 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STC1 stanniocalcin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,975,286...21,988,182
Ensembl chr 8:21,975,283...21,988,198 		JBrowse link
heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:26295701) MGI PMID:26295701 NCBI chr 8:112,435,733...112,751,301 JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 8:112,436,088...112,474,443 JBrowse link
heart induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:31,349,394...31,361,227
Ensembl chr 2:31,348,808...31,360,901 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:31,097,673...31,104,774
Ensembl chr24:31,097,538...31,101,225 		JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:18297060) BHF-UCL PMID:18297060 NCBI chr 9:78,836,803...78,840,158
Ensembl chr 9:78,835,162...78,840,146 		JBrowse link
G GATA5 GATA binding protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:1,756,911...1,769,452
Ensembl chr 2:1,757,420...1,768,143 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:8,286,551...8,288,777
Ensembl chr29:8,286,828...8,287,918 		JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr17:41,306,523...41,313,065 JBrowse link
G ROBO1 roundabout guidance receptor 1 involved_in ISO (PMID:25691540) BHF-UCL PMID:25691540 NCBI chr22:97,178,093...98,363,647
Ensembl chr22:98,222,891...98,363,219 		JBrowse link
G ROBO2 roundabout guidance receptor 2 involved_in ISO (PMID:25691540) BHF-UCL PMID:25691540 NCBI chr22:99,334,033...101,101,924 JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLNR apelin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:16,007,092...16,011,868
Ensembl chr 1:16,008,300...16,009,601 		JBrowse link
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chr22:86,648,924...86,722,006
Ensembl chr22:86,651,076...86,721,948 		JBrowse link
G ASB2 ankyrin repeat and SOCS box containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:71,687,282...71,730,684
Ensembl chr24:71,687,238...71,730,696 		JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19004860) MGI
Ensembl		 PMID:19004860 GO_REF:0000107 NCBI chr 1:65,282,311...65,436,007
Ensembl chr 1:65,282,318...65,435,834 		JBrowse link
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:8,730,456...8,789,379
Ensembl chr15:8,731,278...8,788,523 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:72,004,087...72,061,889 JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15750185) Ensembl
MGI		 PMID:15750185 GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G CLUAP1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chr 5:3,196,257...3,236,912 JBrowse link
G CLUAP1 clusterin associated protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:3,196,267...3,230,902 JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chr13:97,928,480...97,936,594
Ensembl chr13:97,928,634...97,936,589 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:69,554,454...69,586,476
Ensembl chr 5:69,554,578...69,586,365 		JBrowse link
G DNAAF19 dynein axonemal assembly factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:61,502,337...61,505,872
Ensembl chr16:61,502,495...61,505,668 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:130,105,032...130,118,978
Ensembl chr20:130,104,639...130,117,139 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:6,599,056...6,608,613
Ensembl chr16:6,599,579...6,608,544 		JBrowse link
G ENG endoglin involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:10,274,705...10,315,715
Ensembl chr12:10,275,064...10,315,040 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10411502) Ensembl
MGI		 PMID:10411502 GO_REF:0000107 NCBI chr 9:94,797,157...94,803,725
Ensembl chr 9:94,798,088...94,803,629 		JBrowse link
G FOLR1 folate receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:63,405,513...63,413,372
Ensembl chr 1:63,406,597...63,413,352 		JBrowse link
G FOXH1 forkhead box H1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,685,137...138,688,451
Ensembl chr 8:138,685,626...138,687,144 		JBrowse link
G GATA4 GATA binding protein 4 involved_in ISO (PMID:15310850) BHF-UCL PMID:15310850 NCBI chr 8:7,348,145...7,432,574
Ensembl chr 8:7,349,660...7,400,562 		JBrowse link
G GJA1 gap junction protein alpha 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9486664) Ensembl
MGI		 PMID:9486664 GO_REF:0000107 NCBI chr13:52,397,291...52,410,341
Ensembl chr13:52,396,109...52,410,339 		JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9500551) Ensembl
MGI		 PMID:9500551 GO_REF:0000107 NCBI chr23:56,928,164...56,935,675
Ensembl chr23:56,928,676...56,931,785 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9171826) Ensembl
MGI		 PMID:9171826 GO_REF:0000107 NCBI chr 7:119,635,697...119,639,415
Ensembl chr 7:119,634,741...119,638,546 		JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14659802) Ensembl
MGI		 PMID:14659802 GO_REF:0000107 NCBI chr24:38,873,830...38,927,657
Ensembl chr24:38,873,861...38,928,288 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042) MGI PMID:18930042 NCBI chr14:80,130,436...80,171,259 JBrowse link
G IFT172 intraflagellar transport 172 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:80,138,354...80,171,200 JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chr 2:20,154,246...20,211,754
Ensembl chr 2:20,152,036...20,211,682 		JBrowse link
G IFT57 intraflagellar transport 57 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17027958) Ensembl
MGI		 PMID:17027958 GO_REF:0000107 NCBI chr22:72,560,168...72,629,066
Ensembl chr22:72,560,221...72,632,158 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:104,960,296...104,966,596
Ensembl chr10:104,960,120...104,966,585 		JBrowse link
G KDM2A lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chr 1:7,004,109...7,152,072
Ensembl chr 1:7,003,784...7,082,720 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10330409) MGI PMID:10330409 NCBI chr23:35,496,770...35,554,536
Ensembl chr23:35,514,130...35,551,472 		JBrowse link
G LBX1 ladybird homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12522123) Ensembl
MGI		 PMID:12522123 GO_REF:0000107 NCBI chr 9:94,247,931...94,251,092
Ensembl chr 9:94,249,000...94,250,545 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chr11:12,016,542...12,170,496
Ensembl chr11:12,021,560...12,170,663 		JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISO (PMID:16680724) UniProt PMID:16680724 NCBI chr 4:82,702,378...82,887,491
Ensembl chr 4:82,706,738...82,788,152 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:8,286,551...8,288,777
Ensembl chr29:8,286,828...8,287,918 		JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16000382) Ensembl
MGI		 PMID:16000382 GO_REF:0000107 NCBI chr18:58,628,381...58,759,692
Ensembl chr18:58,633,926...58,759,609 		JBrowse link
G NKX2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628699), (PMID:9192865)
(PMID:16510504)		 Ensembl
MGI		 PMID:7628699 PMID:9192865 PMID:16510504 GO_REF:0000107 NCBI chr23:75,391,833...75,399,003
Ensembl chr23:75,391,847...75,395,205 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16496285) MGI
Ensembl		 PMID:16496285 GO_REF:0000107 NCBI chr 9:60,852,567...60,863,225
Ensembl chr 9:60,853,763...60,862,839 		JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
G NOTCH2 notch receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:13,712,140...13,871,777
Ensembl chr20:13,712,292...13,871,784 		JBrowse link
G NOTO notochord homeobox acts_upstream_of_or_within ISO (PMID:17884984) MGI PMID:17884984 NCBI chr14:33,962,173...33,975,040 JBrowse link
G NOTO notochord homeobox involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:33,962,632...33,974,573 JBrowse link
G NPHP3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:57,550,878...57,629,106
Ensembl chr15:57,551,189...57,592,661 		JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17573777) Ensembl
MGI		 PMID:17573777 GO_REF:0000107 NCBI chr 2:47,082,294...47,118,880
Ensembl chr 2:47,082,167...47,117,521 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:36,369,226...36,445,713
Ensembl chr 7:36,369,524...36,443,612 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557208) Ensembl
MGI		 PMID:10557208 GO_REF:0000107 NCBI chr24:50,394,310...50,476,521
Ensembl chr24:50,405,590...50,472,132 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10411502), (PMID:10500184) Ensembl
MGI		 PMID:10411502 PMID:10500184 GO_REF:0000107 NCBI chr21:123,929,937...123,942,451
Ensembl chr21:123,932,900...123,942,395 		JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15183723) MGI
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr26:16,319,959...16,446,472
Ensembl chr26:16,320,933...16,446,527 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in		 ISO (PMID:17610846)
(PMID:17610846), (PMID:17655922)		 MGI
BHF-UCL		 PMID:17610846 PMID:17655922 NCBI chr 8:50,523,816...50,527,360
Ensembl chr 8:50,524,893...50,527,847 		JBrowse link
G SRF serum response factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15929941) MGI
Ensembl		 PMID:15929941 GO_REF:0000107 NCBI chr17:28,983,161...28,993,465
Ensembl chr17:28,983,002...28,992,995 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr20:85,600,171...85,662,732
Ensembl chr20:85,604,539...85,662,333 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16155214) Ensembl
MGI		 PMID:16155214 GO_REF:0000107 NCBI chr 9:95,532,228...95,660,594
Ensembl chr 9:95,532,242...95,657,290 		JBrowse link
G TBX20 T-box transcription factor 20 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15843407)
(PMID:15901664)		 Ensembl
MGI		 PMID:15843407 PMID:15901664 GO_REF:0000107 NCBI chr21:23,166,020...23,222,416
Ensembl chr21:23,166,109...23,224,657 		JBrowse link
G TBX3 T-box transcription factor 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18723448)
(PMID:17460765)		 MGI
Ensembl		 PMID:17460765 PMID:18723448 GO_REF:0000107 NCBI chr11:109,952,100...109,966,328
Ensembl chr11:109,952,054...109,965,065 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:75,112,903...75,200,263
Ensembl chr15:75,112,561...75,197,711 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20178780) MGI
Ensembl		 PMID:20178780 GO_REF:0000107 NCBI chr11:118,913,145...118,927,335
Ensembl chr11:118,913,078...118,928,281 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 involved_in ISO (PMID:11440971) UniProt PMID:11440971 NCBI chr20:3,521,066...3,549,301
Ensembl chr20:3,521,060...3,548,718 		JBrowse link
G WNT3A Wnt family member 3A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16291790) MGI
Ensembl		 PMID:16291790 GO_REF:0000107 NCBI chr25:1,664,316...1,675,006
Ensembl chr25:1,666,053...1,719,881 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19795512) MGI
Ensembl		 PMID:19795512 GO_REF:0000107 NCBI chr22:16,809,454...16,836,815
Ensembl chr22:16,809,451...16,825,048 		JBrowse link
G ZIC3 Zic family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16496285)
(PMID:15384171)		 Ensembl
MGI		 PMID:15384171 PMID:16496285 GO_REF:0000107 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chr22:86,648,924...86,722,006
Ensembl chr22:86,651,076...86,721,948 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chr13:97,928,480...97,936,594
Ensembl chr13:97,928,634...97,936,589 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20678497) Ensembl
MGI		 PMID:20678497 GO_REF:0000107 NCBI chr10:10,113,695...10,288,003
Ensembl chr10:10,121,075...10,287,954 		JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:18930042)
(PMID:22554696)		 MGI PMID:18930042 PMID:22554696 NCBI chr14:80,130,436...80,171,259 JBrowse link
G IFT172 intraflagellar transport 172 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr14:80,138,354...80,171,200 JBrowse link
G IFT25 intraflagellar transport 25 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22595669) Ensembl
MGI		 PMID:22595669 GO_REF:0000107 NCBI chr20:78,988,285...79,012,815
Ensembl chr20:78,991,285...79,013,157 		JBrowse link
G MNS1 meiosis specific nuclear structural 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22396656) MGI
Ensembl		 PMID:22396656 GO_REF:0000107 NCBI chr26:27,026,932...27,060,044
Ensembl chr26:27,027,827...27,059,863 		JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,656,815...1,707,566
Ensembl chr12:1,656,918...1,709,585 		JBrowse link
G NOTCH2 notch receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:13,712,140...13,871,777
Ensembl chr20:13,712,292...13,871,784 		JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chr 7:58,501,669...58,526,413
Ensembl chr 7:58,501,559...58,507,318 		JBrowse link
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chr21:10,850,618...11,030,099 JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9636176) Ensembl
MGI		 PMID:9636176 GO_REF:0000107 NCBI chr21:97,788,955...97,814,549
Ensembl chr21:97,788,624...97,814,709 		JBrowse link
G ZIC3 Zic family member 3 involved_in ISO (PMID:17127413) MGI PMID:17127413 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:34,009,527...34,011,924
Ensembl chr13:34,010,228...34,011,046 		JBrowse link
G CLUAP1 clusterin associated protein 1 acts_upstream_of_or_within ISO (PMID:23742838) MGI PMID:23742838 NCBI chr 5:3,196,257...3,236,912 JBrowse link
G CLUAP1 clusterin associated protein 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 5:3,196,267...3,230,902 JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:69,554,454...69,586,476
Ensembl chr 5:69,554,578...69,586,365 		JBrowse link
G DPCD deleted in primary ciliary dyskinesia homolog (mouse) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20080492) Ensembl
MGI		 PMID:20080492 GO_REF:0000107 NCBI chr 9:94,612,383...94,633,729
Ensembl chr 9:94,612,460...94,633,537 		JBrowse link
G FOXJ1 forkhead box J1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10873152) Ensembl
MGI		 PMID:10873152 GO_REF:0000107 NCBI chr16:45,536,973...45,544,331
Ensembl chr16:45,539,510...45,544,299 		JBrowse link
G IFT57 intraflagellar transport 57 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17027958) Ensembl
MGI		 PMID:17027958 GO_REF:0000107 NCBI chr22:72,560,168...72,629,066
Ensembl chr22:72,560,221...72,632,158 		JBrowse link
G LOC103219528 doublesex- and mab-3-related transcription factor 2 NOT|acts_upstream_of_or_within ISO (PMID:21203428) MGI PMID:21203428 NCBI chr12:78,461,974...78,472,868
Ensembl chr12:78,461,987...78,468,684 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32203821), (PMID:32966817) Ensembl
MGI		 PMID:32203821 PMID:32966817 GO_REF:0000107 NCBI chr 6:36,529,848...36,580,213
Ensembl chr 6:36,530,014...36,582,525 		JBrowse link
G MOSMO modulator of smoothened acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:34486668) MGI
Ensembl		 PMID:34486668 GO_REF:0000107 NCBI chr 5:19,679,299...19,760,484
Ensembl chr 5:19,679,317...19,758,166 		JBrowse link
G NME7 NME/NM23 family member 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20080492) MGI
Ensembl		 PMID:20080492 GO_REF:0000107 NCBI chr25:59,685,437...59,899,458
Ensembl chr25:59,685,531...59,898,677 		JBrowse link
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:20080492) MGI PMID:20080492 NCBI chr21:10,850,618...11,030,099 JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16801545) Ensembl
MGI		 PMID:16801545 GO_REF:0000107 NCBI chr 2:13,988,059...13,993,780
Ensembl chr 2:13,988,024...13,993,746 		JBrowse link
G ZIC3 Zic family member 3 involved_in ISO (PMID:23184148)
(PMID:23303524)		 MGI PMID:23184148 PMID:23303524 NCBI chr  X:112,597,329...112,609,411
Ensembl chr  X:112,598,466...112,601,803 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19686689)
(PMID:19805295)		 Ensembl
MGI		 PMID:19686689 PMID:19805295 GO_REF:0000107 NCBI chr22:2,679,488...2,725,034
Ensembl chr22:2,684,022...2,723,949 		JBrowse link
G WNT2 Wnt family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19686689) Ensembl
MGI		 PMID:19686689 GO_REF:0000107 NCBI chr21:85,955,517...86,005,664
Ensembl chr21:85,955,145...86,001,730 		JBrowse link
G WNT2B Wnt family member 2B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19686689) MGI
Ensembl		 PMID:19686689 GO_REF:0000107 NCBI chr20:21,116,310...21,129,461
Ensembl chr20:21,117,415...21,123,516 		JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15531758) Ensembl
MGI		 PMID:15531758 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16720875) Ensembl
MGI		 PMID:16720875 GO_REF:0000107 NCBI chr 4:43,080,387...43,163,355
Ensembl chr 4:43,081,831...43,163,432 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16720875) Ensembl
MGI		 PMID:16720875 GO_REF:0000107 NCBI chr21:16,386,700...16,665,648
Ensembl chr21:16,549,789...16,662,238