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ONTOLOGY REPORT - ANNOTATIONS

Term:pattern specification process
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Accession:GO:0007389 term browser browse the term
Definition:Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
Synonyms:related_synonym: pattern biosynthesis;   pattern formation


show annotations for term's descendants           Sort by:
pattern specification process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:17849440) MGI PMID:17849440 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063 		JBrowse link
G ALX3 ALX homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11641221) Ensembl
MGI		 PMID:11641221 GO_REF:0000107 NCBI chr 1:112,706,782...112,717,635
Ensembl chr 1:127,624,197...127,634,004 		JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:11641221) MGI PMID:11641221 NCBI chr11:44,219,865...44,269,597 JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16740478) MGI
TreeGrafter		 PMID:16740478 GO_REF:0000118 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709 		JBrowse link
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930101) Ensembl
MGI		 PMID:15930101 GO_REF:0000107 NCBI chr12:100,536,895...100,539,737
Ensembl chr12:103,932,302...103,932,999 		JBrowse link
G ASPH aspartate beta-hydroxylase acts_upstream_of_or_within ISO (PMID:11773073) MGI PMID:11773073 NCBI chr 8:57,921,580...58,134,778
Ensembl chr 8:59,629,707...59,843,658 		JBrowse link
G BMP5 bone morphogenetic protein 5 acts_upstream_of_or_within ISO (PMID:1339316) MGI PMID:1339316 NCBI chr 6:55,302,721...55,425,248
Ensembl chr 6:56,936,850...57,059,519 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7590254) Ensembl
MGI		 PMID:7590254 GO_REF:0000107 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15716346) Ensembl
MGI		 PMID:15716346 GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19004860) Ensembl
MGI		 PMID:19004860 GO_REF:0000107 NCBI chr11:69,085,434...69,244,791 JBrowse link
G CDX1 caudal type homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11959827) Ensembl
MGI		 PMID:11959827 GO_REF:0000107 NCBI chr 5:145,591,186...145,608,976
Ensembl chr 5:151,592,139...151,614,257 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11959827) Ensembl
MGI		 PMID:11959827 GO_REF:0000107 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632 		JBrowse link
G CHRD chordin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12397106) UniProt
MGI		 PMID:12397106 GO_REF:0000117 NCBI chr 3:181,417,140...181,460,236
Ensembl chr 3:189,898,856...189,908,573 		JBrowse link
G CRAMP1 cramped chromatin regulator homolog 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:233,377...299,494
Ensembl chr16:1,666,559...1,726,437 		JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16399080) Ensembl
MGI		 PMID:16399080 GO_REF:0000107 NCBI chr22:3,141,147...3,177,448
Ensembl chr22:19,632,359...19,668,858 		JBrowse link
G DCHS1 dachsous cadherin-related 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26258302) Ensembl
MGI		 PMID:26258302 GO_REF:0000107 NCBI chr11:6,753,383...6,787,896
Ensembl chr11:6,436,536...6,456,352 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16916509)
(PMID:16530750)		 Ensembl
MGI		 PMID:16530750 PMID:16916509 GO_REF:0000107 NCBI chr 8:67,728,057...68,060,069
Ensembl chr 8:69,387,769...69,551,829 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr20:22,519,942...22,524,262 JBrowse link
G FST follistatin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15525533) Ensembl
MGI		 PMID:15525533 GO_REF:0000107 NCBI chr 5:60,544,495...60,550,516 JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8575294)
(PMID:14602680)		 Ensembl
MGI		 PMID:8575294 PMID:14602680 GO_REF:0000107 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14602680) Ensembl
MGI		 PMID:14602680 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14608380) Ensembl
MGI		 PMID:14608380 GO_REF:0000107 NCBI chr 1:23,519,911...23,558,105
Ensembl chr 1:24,502,294...24,547,152 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11731457), (PMID:12724834), (PMID:15930101)
(PMID:12930780)		 Ensembl
MGI		 PMID:11731457 PMID:12724834 PMID:12930780 PMID:15930101 GO_REF:0000107 NCBI chr 4:69,837,643...69,840,101
Ensembl chr 4:76,397,180...76,399,715 		JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18302773) Ensembl
MGI		 PMID:18302773 GO_REF:0000107 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257 		JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18302773) Ensembl
MGI		 PMID:18302773 GO_REF:0000107 NCBI chr 6:123,527,180...123,538,794
Ensembl chr 6:127,647,547...127,659,056 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within ISO (PMID:7903600)
(PMID:7903601)		 MGI PMID:7903600 PMID:7903601 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11900462) Ensembl
MGI		 PMID:11900462 GO_REF:0000107 NCBI chr 7:27,786,040...27,789,339
Ensembl chr 7:27,385,175...27,388,990 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:8900279) MGI PMID:8900279 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HOXD12 homeobox D12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8900279) Ensembl
MGI		 PMID:8900279 GO_REF:0000107 NCBI chr2B:63,379,611...63,382,293
Ensembl chr2B:181,089,181...181,091,055 		JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:8106170)
(PMID:8900279)
(PMID:11850178)		 MGI PMID:8106170 PMID:8900279 PMID:11850178 NCBI chr2B:63,372,517...63,375,731 JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9671585) Ensembl
MGI		 PMID:9671585 GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930111)
(PMID:10498685)		 Ensembl
MGI		 PMID:10498685 PMID:15930111 GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 acts_upstream_of_or_within ISO (PMID:1633717) MGI PMID:1633717 NCBI chr14:27,434,904...28,274,969
Ensembl chr14:45,752,214...46,583,991 		JBrowse link
G MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr22:18,385,664...18,407,056
Ensembl chr22:36,218,403...36,239,804 		JBrowse link
G NKX2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:12930780) MGI PMID:12930780
G NOG noggin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12397106) Ensembl
MGI		 PMID:12397106 GO_REF:0000107 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092 		JBrowse link
G NRG3 neuregulin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10723730) Ensembl
MGI		 PMID:10723730 GO_REF:0000107 NCBI chr10:78,267,693...79,384,895
Ensembl chr10:81,862,036...82,973,334 		JBrowse link
G PAX1 paired box 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11900462) Ensembl
MGI		 PMID:11900462 GO_REF:0000107 NCBI chr20:21,663,155...21,676,880
Ensembl chr20:21,623,771...21,632,608 		JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9262482) Ensembl
MGI		 PMID:9262482 GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G RAX retina and anterior neural fold homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:13970082) Ensembl
MGI		 PMID:13970082 GO_REF:0000107 NCBI chr18:52,664,243...52,669,177
Ensembl chr18:55,990,984...55,995,469 		JBrowse link
G RNF111 ring finger protein 111 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11298452) Ensembl
MGI		 PMID:11298452 GO_REF:0000107 NCBI chr15:37,957,390...38,068,006
Ensembl chr15:56,265,379...56,374,484 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12231626)
(PMID:14602680)		 Ensembl
MGI
UniProt		 PMID:12231626 PMID:14602680 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SHROOM3 shroom family member 3 acts_upstream_of_or_within ISO (PMID:10589677) MGI PMID:10589677 NCBI chr 4:47,420,351...47,767,325
Ensembl chr 4:53,260,739...53,606,976 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16530750)
(PMID:16916509)		 Ensembl
MGI		 PMID:16530750 PMID:16916509 GO_REF:0000107 NCBI chr14:41,250,512...41,256,567
Ensembl chr14:59,515,324...59,527,494 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17849440) Ensembl
MGI		 PMID:17849440 GO_REF:0000107 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15107405) MGI
TreeGrafter		 PMID:15107405 GO_REF:0000118 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G SOSTDC1 sclerostin domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16179481) Ensembl
MGI		 PMID:16179481 GO_REF:0000107 NCBI chr 7:17,193,531...17,229,769
Ensembl chr 7:16,443,703...16,448,076
Ensembl chr 7:16,443,703...16,448,076 		JBrowse link
G SYNGAP1 synaptic Ras GTPase activating protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16452659) Ensembl
MGI		 PMID:16452659 GO_REF:0000107 NCBI chr 6:32,999,408...33,033,067
Ensembl chr 6:34,110,652...34,144,490 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16399080)
(PMID:15385444), (PMID:15652707)		 MGI PMID:15385444 PMID:15652707 PMID:16399080 NCBI chr22:2,521,080...2,541,267 JBrowse link
G TBX5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15289437) Ensembl
TreeGrafter
MGI		 PMID:15289437 GO_REF:0000107 GO_REF:0000118 NCBI chr12:111,954,222...112,009,261
Ensembl chr12:115,333,609...115,389,739 		JBrowse link
G TP63 tumor protein p63 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10227294) Ensembl
MGI		 PMID:10227294 GO_REF:0000107 NCBI chr 3:186,651,879...186,918,300
Ensembl chr 3:195,199,167...195,474,104 		JBrowse link
G UNCX UNC homeobox acts_upstream_of_or_within ISO (PMID:10804168)
(PMID:10804169)		 MGI PMID:10804168 PMID:10804169 NCBI chr 7:1,479,804...1,485,041 JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9389660) Ensembl
MGI		 PMID:9389660 GO_REF:0000107 NCBI chr10:31,449,202...31,659,534
Ensembl chr10:32,046,491...32,253,550 		JBrowse link
G ZIC1 Zic family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:144,437,075...144,443,516
Ensembl chr 3:152,019,013...152,024,502 		JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11959836) MGI
Ensembl		 PMID:11959836 GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
anterior/posterior axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AURKA aurora kinase A acts_upstream_of_or_within ISO (PMID:22939930) MGI PMID:22939930 NCBI chr20:52,707,757...52,730,579
Ensembl chr20:53,994,881...54,017,339 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10964473) Ensembl
MGI		 PMID:10964473 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G CDX1 caudal type homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:145,591,186...145,608,976
Ensembl chr 5:151,592,139...151,614,257 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632 		JBrowse link
G CDX4 caudal type homeobox 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:62,674,244...62,681,944
Ensembl chr  X:72,796,634...72,804,717 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18241853)
(PMID:15004567)		 Ensembl
MGI		 PMID:15004567 PMID:18241853 GO_REF:0000107 NCBI chr 9:14,552,062...14,559,632
Ensembl chr 9:15,063,766...15,066,776 		JBrowse link
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:18241853) MGI PMID:18241853 NCBI chr 3:46,473,282...46,478,454
Ensembl chr 3:47,577,949...47,583,126 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10662781) Ensembl
MGI		 PMID:10662781 GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G DDIT3 DNA damage inducible transcript 3 involved_in ISO (PMID:16434966) BHF-UCL PMID:16434966 NCBI chr12:31,406,332...31,410,293
Ensembl chr12:31,664,743...31,668,701 		JBrowse link
G GPC3 glypican 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10964473) MGI
Ensembl		 PMID:10964473 GO_REF:0000107 NCBI chr  X:122,677,072...123,131,511
Ensembl chr  X:132,979,612...133,432,441 		JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:15680351) MGI PMID:15680351 NCBI chr 8:76,286,433...76,290,507
Ensembl chr 8:77,913,761...77,921,201 		JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15680351) Ensembl
MGI		 PMID:15680351 GO_REF:0000107 NCBI chr 6:123,527,180...123,538,794
Ensembl chr 6:127,647,547...127,659,056 		JBrowse link
G LDB1 LIM domain binding 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12490556) Ensembl
MGI		 PMID:12490556 GO_REF:0000107 NCBI chr10:98,707,470...98,722,771
Ensembl chr10:102,179,757...102,184,047 		JBrowse link
G LEFTY2 left-right determination factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:201,398,235...201,402,906
Ensembl chr 1:206,397,118...206,401,839 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G LOC100969502 left-right determination factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15004567) MGI
TreeGrafter		 PMID:15004567 GO_REF:0000118 NCBI chr 1:201,347,411...201,351,295
Ensembl chr 1:206,348,419...206,350,787 		JBrowse link
G LOC129392969 DDIT3 upstream open reading frame protein involved_in IEA Ensembl GO_REF:0000107 Ensembl chr12:31,664,743...31,668,701 JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311163) Ensembl
MGI		 PMID:11311163 GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr2B:84,076,945...84,166,385
Ensembl chr2B:201,983,321...202,064,467 		JBrowse link
G RNF2 ring finger protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12183370) Ensembl
MGI		 PMID:12183370 GO_REF:0000107 NCBI chr 1:160,568,438...160,626,783
Ensembl chr 1:164,721,458...164,779,420 		JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035 		JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:11731796) MGI PMID:11731796 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:15155583) MGI PMID:15155583 NCBI chr 6:82,621,987...82,654,137
Ensembl chr 6:85,862,810...85,938,799 		JBrowse link
G WLS Wnt ligand secretion mediator involved_in ISO (PMID:19841259) UniProt PMID:19841259 NCBI chr 1:67,336,009...67,470,265
Ensembl chr 1:69,318,742...69,425,652 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRIPTO cripto, EGF-CFC family member acts_upstream_of_or_within ISO (PMID:9790191) MGI PMID:9790191 NCBI chr 3:46,473,282...46,478,454
Ensembl chr 3:47,577,949...47,583,126 		JBrowse link
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15870281) Ensembl
MGI		 PMID:15870281 GO_REF:0000107 NCBI chr12:66,992,207...67,107,313
Ensembl chr12:69,829,435...69,878,293 		JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774 		JBrowse link
G TASOR transcription activation suppressor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077 		JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316 		JBrowse link
G TCF7L1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:14668413) MGI PMID:14668413 NCBI chr2A:85,186,660...85,363,033
Ensembl chr2A:86,739,417...86,913,905 		JBrowse link
G WNT5A Wnt family member 5A involved_in ISO (PMID:9054360) BHF-UCL PMID:9054360 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2A activin A receptor type 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10452853), (PMID:16991118) Ensembl
MGI		 PMID:10452853 PMID:16991118 GO_REF:0000107 NCBI chr2B:11,933,683...12,020,287
Ensembl chr2B:152,253,826...152,288,385 		JBrowse link
G ACVR2B activin A receptor type 2B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16845371), (PMID:16991118), (PMID:9242489)
(PMID:15542835)
(PMID:10452853), (PMID:16991118)		 Ensembl
MGI		 PMID:9242489 PMID:10452853 PMID:15542835 PMID:16845371 PMID:16991118 GO_REF:0000107 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063 		JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16368932)
(PMID:17067568)
(PMID:15652703), (PMID:15872003)		 Ensembl
MGI		 PMID:15652703 PMID:15872003 PMID:16368932 PMID:17067568 GO_REF:0000107 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (PMID:9847249) MGI PMID:9847249 NCBI chr12:82,800,273...82,822,031
Ensembl chr12:85,902,113...85,923,774 		JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9374397), (PMID:9847249)
(PMID:9847249)		 MGI PMID:9374397 PMID:9847249 NCBI chr11:44,219,865...44,269,597 JBrowse link
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709 		JBrowse link
G ARC activity regulated cytoskeleton associated protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10727859) Ensembl
MGI		 PMID:10727859 GO_REF:0000107 NCBI chr 8:139,320,366...139,323,802
Ensembl chr 8:142,367,995...142,369,185 		JBrowse link
G BARX1 BARX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17855428) Ensembl
MGI		 PMID:17855428 GO_REF:0000107 NCBI chr 9:65,071,990...65,151,152 JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15136140) Ensembl
MGI		 PMID:15136140 GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G BMPR2 bone morphogenetic protein receptor type 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15542835)
(PMID:10772805)		 Ensembl
MGI		 PMID:10772805 PMID:15542835 GO_REF:0000107 NCBI chr2B:89,631,622...89,823,438
Ensembl chr2B:207,780,741...207,961,072 		JBrowse link
G BPTF bromodomain PHD finger transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18794365)
(PMID:18974875)		 Ensembl
MGI		 PMID:18794365 PMID:18974875 GO_REF:0000107 NCBI chr17:61,759,241...61,917,343
Ensembl chr17:66,956,594...67,109,428 		JBrowse link
G BTG2 BTG anti-proliferation factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15542835) Ensembl
MGI		 PMID:15542835 GO_REF:0000107 NCBI chr 1:178,907,317...178,911,410
Ensembl chr 1:183,201,297...183,205,404 		JBrowse link
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19754878) Ensembl
MGI		 PMID:19754878 GO_REF:0000107 NCBI chr11:120,772,160...120,877,529
Ensembl chr11:124,685,084...124,786,091 		JBrowse link
G CDX1 caudal type homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11784046)
(PMID:11784046), (PMID:7585967)		 Ensembl
MGI		 PMID:7585967 PMID:11784046 GO_REF:0000107 NCBI chr 5:145,591,186...145,608,976
Ensembl chr 5:151,592,139...151,614,257 		JBrowse link
G CDX2 caudal type homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19853565) Ensembl
MGI		 PMID:19853565 GO_REF:0000107 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632 		JBrowse link
G CDX4 caudal type homeobox 4 acts_upstream_of_or_within ISO (PMID:19853565) MGI PMID:19853565 NCBI chr  X:62,674,244...62,681,944
Ensembl chr  X:72,796,634...72,804,717 		JBrowse link
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19357712)
(PMID:18849982)		 Ensembl
MGI		 PMID:18849982 PMID:19357712 GO_REF:0000107 Ensembl chr22:45,428,159...45,604,453 JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9501024) Ensembl
MGI		 PMID:9501024 GO_REF:0000107 NCBI chr 9:14,552,062...14,559,632
Ensembl chr 9:15,063,766...15,066,776 		JBrowse link
G CFC1B cryptic, EGF-CFC family member 1B acts_upstream_of_or_within ISO (PMID:11412024) MGI PMID:11412024 NCBI chr2B:29,354,004...29,362,161 JBrowse link
G CLSTN1 calsyntenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:8,495,571...8,591,613
Ensembl chr 1:9,724,743...9,774,760 		JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16399080) Ensembl
MGI		 PMID:16399080 GO_REF:0000107 NCBI chr22:3,141,147...3,177,448
Ensembl chr22:19,632,359...19,668,858 		JBrowse link
G CTNNBIP1 catenin beta interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15148409) Ensembl
MGI		 PMID:15148409 GO_REF:0000107 Ensembl chr 1:9,846,511...9,882,049 JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 acts_upstream_of_or_within ISO (PMID:17067568) MGI PMID:17067568 NCBI chr10:89,817,623...89,822,024
Ensembl chr10:93,330,460...93,334,105 		JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17067568) Ensembl
MGI		 PMID:17067568 GO_REF:0000107 NCBI chr10:89,804,830...89,813,687
Ensembl chr10:93,317,798...93,325,315 		JBrowse link
G EMX2 empty spiracles homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15917450)
(PMID:12196586)		 Ensembl
MGI		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr10:114,124,759...114,132,109
Ensembl chr10:117,551,451...117,557,972 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr20:22,519,942...22,524,262 JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11358868) Ensembl
MGI		 PMID:11358868 GO_REF:0000107 NCBI chr 8:141,240,691...141,244,381
Ensembl chr 8:144,225,933...144,232,736 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:19877275) MGI PMID:19877275 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589 		JBrowse link
G GDF11 growth differentiation factor 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918385)
(PMID:10391213)		 Ensembl
MGI		 PMID:10391213 PMID:23918385 GO_REF:0000107 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22841643) Ensembl
MGI		 PMID:22841643 GO_REF:0000107 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22841643)
(PMID:15315762)		 Ensembl
MGI		 PMID:15315762 PMID:22841643 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GRSF1 G-rich RNA sequence binding factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15857914) Ensembl
MGI		 PMID:15857914 GO_REF:0000107 NCBI chr 4:53,384,303...53,404,706 JBrowse link
G HHEX hematopoietically expressed homeobox involved_in ISO (PMID:16936074) UniProt PMID:16936074 NCBI chr10:89,433,402...89,439,137
Ensembl chr10:92,947,373...92,952,992 		JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537918) Ensembl
MGI		 PMID:16537918 GO_REF:0000107 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714 		JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537918) Ensembl
MGI		 PMID:16537918 GO_REF:0000107 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15872003) Ensembl
MGI		 PMID:15872003 GO_REF:0000107 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863 		JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:10529420)
(PMID:15367676)		 MGI PMID:10529420 PMID:15367676 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747 		JBrowse link
G HOXA10 homeobox A10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chr 7:27,815,112...27,818,829
Ensembl chr 7:27,415,833...27,423,580 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within ISO (PMID:9367425) MGI PMID:9367425 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7913519)
(PMID:9441667)		 Ensembl
TreeGrafter
MGI		 PMID:7913519 PMID:9441667 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:27,750,642...27,767,125
Ensembl chr 7:27,350,491...27,371,169 		JBrowse link
G HOXA4 homeobox A4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7628700)
(PMID:7918106)		 MGI
TreeGrafter		 PMID:7628700 PMID:7918106 GO_REF:0000118 NCBI chr 7:27,773,001...27,775,284 JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17626057)
(PMID:7901120), (PMID:9603431)
(PMID:17417799)		 Ensembl
TreeGrafter
MGI		 PMID:7901120 PMID:9603431 PMID:17417799 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:27,786,040...27,789,339
Ensembl chr 7:27,385,175...27,388,990 		JBrowse link
G HOXA6 homeobox A6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17626057)
(PMID:7918106)		 Ensembl
TreeGrafter
MGI		 PMID:7918106 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:27,790,031...27,792,348
Ensembl chr 7:27,389,679...27,391,997 		JBrowse link
G HOXA7 homeobox A7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9784603) Ensembl
TreeGrafter
MGI		 PMID:9784603 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:27,799,317...27,802,492
Ensembl chr 7:27,396,898...27,402,142 		JBrowse link
G HOXA9 homeobox A9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9013929)
(PMID:8625797)
(PMID:17626057)		 Ensembl
TreeGrafter
MGI		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:27,806,942...27,810,304
Ensembl chr 7:27,405,931...27,409,984 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:10529420)		 Ensembl
MGI		 PMID:10529420 PMID:10885747 GO_REF:0000107 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9012503)
(PMID:10885747)		 Ensembl
MGI		 PMID:9012503 PMID:10885747 GO_REF:0000107 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667)
(PMID:10885747)		 Ensembl
TreeGrafter
MGI		 PMID:9441667 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,946,441...8,987,876
Ensembl chr17:9,147,784...9,171,021 		JBrowse link
G HOXB4 homeobox B4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628700)
(PMID:10885747)
(PMID:9012503)		 Ensembl
TreeGrafter
MGI		 PMID:7628700 PMID:9012503 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,958,253...8,961,261
Ensembl chr17:9,143,173...9,146,161 		JBrowse link
G HOXB5 homeobox B5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7828847)
(PMID:10885747)
(PMID:17626057)		 Ensembl
TreeGrafter
MGI		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,941,990...8,945,512
Ensembl chr17:9,127,630...9,130,616 		JBrowse link
G HOXB6 homeobox B6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:7828847)
(PMID:17626057)		 Ensembl
TreeGrafter
MGI		 PMID:7828847 PMID:10885747 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,931,773...8,941,024
Ensembl chr17:9,116,886...9,126,150 		JBrowse link
G HOXB7 homeobox B7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9784603)
(PMID:10885747)		 Ensembl
TreeGrafter
MGI		 PMID:9784603 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,925,717...8,929,523
Ensembl chr17:9,110,864...9,114,639 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311170)
(PMID:10885747)
(PMID:10559485), (PMID:11311170)
(PMID:14623233)		 Ensembl
MGI		 PMID:10559485 PMID:10885747 PMID:11311170 PMID:14623233 GO_REF:0000107 NCBI chr17:8,920,986...8,924,649
Ensembl chr17:9,106,662...9,109,540 		JBrowse link
G HOXB9 homeobox B9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9013929)
(PMID:17626057)
(PMID:10885747)		 Ensembl
TreeGrafter
MGI		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,910,421...8,916,128
Ensembl chr17:9,095,438...9,100,747 		JBrowse link
G HOXC10 homeobox C10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chr12:34,764,956...34,770,088
Ensembl chr12:35,553,262...35,558,393 		JBrowse link
G HOXC11 homeobox C11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869760) Ensembl
MGI		 PMID:12869760 GO_REF:0000107 NCBI chr12:34,777,790...34,782,104
Ensembl chr12:35,567,093...35,570,396 		JBrowse link
G HOXC13 homeobox C13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9420327) Ensembl
MGI		 PMID:9420327 GO_REF:0000107 NCBI chr12:34,808,575...34,816,324
Ensembl chr12:35,596,821...35,604,560 		JBrowse link
G HOXC4 homeobox C4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8660891)
(PMID:8626021)		 Ensembl
TreeGrafter
MGI		 PMID:8626021 PMID:8660891 GO_REF:0000107 GO_REF:0000118 NCBI chr12:34,699,357...34,702,368
Ensembl chr12:35,487,619...35,526,627 		JBrowse link
G HOXC5 homeobox C5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17626057) MGI
TreeGrafter		 PMID:17626057 GO_REF:0000118 NCBI chr12:34,720,006...34,722,202
Ensembl chr12:35,508,711...35,510,388 		JBrowse link
G HOXC6 homeobox C6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17626057) Ensembl
TreeGrafter
MGI		 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr12:34,724,503...34,739,436
Ensembl chr12:35,512,686...35,526,627 		JBrowse link
G HOXC8 homeobox C8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311170) Ensembl
MGI		 PMID:11311170 GO_REF:0000107 NCBI chr12:34,742,674...34,746,451
Ensembl chr12:35,531,200...35,534,420 		JBrowse link
G HOXC9 homeobox C9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17626057)
(PMID:7547473)		 Ensembl
TreeGrafter
MGI		 PMID:7547473 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr12:34,751,922...34,755,157
Ensembl chr12:35,540,234...35,543,486 		JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10642795)
(PMID:12869760)		 Ensembl
MGI		 PMID:10642795 PMID:12869760 GO_REF:0000107 NCBI chr2B:63,395,636...63,399,704
Ensembl chr2B:181,104,876...181,110,963 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:12869760) MGI PMID:12869760 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HOXD13 homeobox D13 acts_upstream_of_or_within ISO (PMID:8106170) MGI PMID:8106170 NCBI chr2B:63,372,517...63,375,731 JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7910549), (PMID:7913519)
(PMID:7913519)
(PMID:9441667)		 Ensembl
TreeGrafter
MGI		 PMID:7910549 PMID:7913519 PMID:9441667 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:63,432,720...63,452,816
Ensembl chr2B:181,141,538...181,161,604 		JBrowse link
G HOXD4 homeobox D4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:7750651)
(PMID:7628700)		 MGI
TreeGrafter
Ensembl		 PMID:7628700 PMID:7750651 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:63,429,084...63,432,972
Ensembl chr2B:181,140,175...181,141,484 		JBrowse link
G HOXD8 homeobox D8 acts_upstream_of_or_within ISO (PMID:11311170) MGI PMID:11311170 NCBI chr2B:63,409,223...63,412,146 JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10642795)
(PMID:8625797)
(PMID:17626057)		 Ensembl
TreeGrafter
MGI		 PMID:8625797 PMID:10642795 PMID:17626057 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:63,401,813...63,404,731
Ensembl chr2B:181,112,002...181,113,415 		JBrowse link
G HTT huntingtin acts_upstream_of_or_within ISO (PMID:16109169) MGI PMID:16109169 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730 		JBrowse link
G IFITM1 interferon induced transmembrane protein 1 acts_upstream_of_or_within ISO (PMID:15857914) MGI PMID:15857914 NCBI chr11:309,930...311,177
Ensembl chr11:353,236...354,986 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:12701101)
(PMID:15930098)		 MGI PMID:12701101 PMID:15930098 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10220415) MGI PMID:10220415 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431 		JBrowse link
G KMT2A lysine methyltransferase 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16618927)
(PMID:15741318)		 Ensembl
MGI		 PMID:15741318 PMID:16618927 GO_REF:0000107 NCBI chr11:113,273,198...113,364,404
Ensembl chr11:117,204,820...117,290,100 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10498685) Ensembl
MGI		 PMID:10498685 GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G LRP5 LDL receptor related protein 5 acts_upstream_of_or_within ISO (PMID:15142971) MGI PMID:15142971 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512)
(PMID:15142971)
(PMID:16126904)		 MGI PMID:15142971 PMID:16126904 PMID:19795512 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MLLT3 MLLT3 super elongation complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12242306) Ensembl
MGI		 PMID:12242306 GO_REF:0000107 NCBI chr 9:20,140,160...20,417,327
Ensembl chr 9:20,800,393...21,073,046 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21465616) Ensembl
MGI		 PMID:21465616 GO_REF:0000107 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:21465616) MGI PMID:21465616 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G NEUROD1 neuronal differentiation 1 acts_upstream_of_or_within ISO (PMID:16368089) MGI PMID:16368089 NCBI chr2B:68,939,341...68,943,516 JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16496285)
(PMID:15302604)
(PMID:11311163)
(PMID:11418863), (PMID:15004567)		 Ensembl
MGI		 PMID:11311163 PMID:11418863 PMID:15004567 PMID:15302604 PMID:16496285 GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (PMID:15829524) MGI PMID:15829524 NCBI chr15:75,008,879...75,021,981 JBrowse link
G OTX1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15105370) Ensembl
MGI		 PMID:15105370 GO_REF:0000107 NCBI chr2A:63,125,700...63,133,702
Ensembl chr2A:64,255,217...64,262,221 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:9501024)
(PMID:11412024)
(PMID:12652306)		 MGI PMID:9501024 PMID:11412024 PMID:12652306 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15917450)
(PMID:12196586)		 Ensembl
MGI		 PMID:12196586 PMID:15917450 GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PBX1 PBX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11566859) Ensembl
MGI		 PMID:11566859 GO_REF:0000107 NCBI chr 1:139,985,392...140,311,845
Ensembl chr 1:143,778,701...144,104,797 		JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8625838)
(PMID:15741318)		 Ensembl
MGI		 PMID:8625838 PMID:15741318 GO_REF:0000107 NCBI chr17:18,523,859...18,539,794
Ensembl chr17:18,798,917...18,814,838 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502 		JBrowse link
G PDS5A PDS5 cohesin associated factor A acts_upstream_of_or_within ISO (PMID:19412548) MGI PMID:19412548 NCBI chr 4:34,149,622...34,303,065
Ensembl chr 4:40,002,869...40,156,698 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11784046), (PMID:8388780) Ensembl
MGI		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G RING1 ring finger protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16624538)
(PMID:11060235), (PMID:16624538)		 Ensembl
MGI		 PMID:11060235 PMID:16624538 GO_REF:0000107 NCBI chr 6:32,780,699...32,784,922
Ensembl chr 6:33,895,849...33,899,417 		JBrowse link
G SCMH1 Scm polycomb group protein homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17215307) Ensembl
MGI		 PMID:17215307 GO_REF:0000107 NCBI chr 1:40,323,101...40,540,236
Ensembl chr 1:41,639,127...41,776,261 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 acts_upstream_of_or_within ISO (PMID:15741318) MGI PMID:15741318 NCBI chr2B:84,633,272...84,678,602
Ensembl chr2B:202,530,200...202,573,346 		JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:16467359) MGI PMID:16467359 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467359) Ensembl
MGI		 PMID:16467359 GO_REF:0000107 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11118883) Ensembl
MGI		 PMID:11118883 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11418863), (PMID:9529255)
(PMID:12842913)		 Ensembl
MGI		 PMID:9529255 PMID:11418863 PMID:12842913 GO_REF:0000107 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530 		JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15215210) Ensembl
MGI		 PMID:15215210 GO_REF:0000107 NCBI chr18:44,402,112...44,456,779
Ensembl chr18:47,764,568...47,797,359 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:22987639) MGI PMID:22987639 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15084464)
(PMID:16399080)		 MGI PMID:15084464 PMID:16399080 NCBI chr22:2,521,080...2,541,267 JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15384171) Ensembl
MGI		 PMID:15384171 GO_REF:0000107 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595 		JBrowse link
G TCF15 transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8955271) Ensembl
MGI		 PMID:8955271 GO_REF:0000107 NCBI chr20:811,907...817,971 JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16845371) Ensembl
MGI		 PMID:16845371 GO_REF:0000107 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748 		JBrowse link
G TSHZ1 teashirt zinc finger homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17586487) Ensembl
MGI		 PMID:17586487 GO_REF:0000107 NCBI chr18:68,597,354...68,676,462
Ensembl chr18:71,873,594...71,951,654 		JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19334287) Ensembl
MGI		 PMID:19334287 GO_REF:0000107 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18849982) MGI PMID:18849982 NCBI chr 1:135,754,897...135,783,031
Ensembl chr 1:139,683,745...139,704,281 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15148409) Ensembl
MGI		 PMID:15148409 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:15073149), (PMID:19795512) MGI PMID:15073149 PMID:19795512 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
G YY1 YY1 transcription factor acts_upstream_of_or_within ISO (PMID:16624538) MGI PMID:16624538 NCBI chr14:80,859,491...80,903,651 JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10835630) Ensembl
MGI		 PMID:10835630 GO_REF:0000107 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164 		JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16496285) MGI
Ensembl		 PMID:16496285 GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
axis elongation involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008) MGI PMID:11029008 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20630950) Ensembl
MGI		 PMID:20630950 GO_REF:0000107 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11029008) Ensembl
MGI		 PMID:11029008 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17531978) Ensembl
MGI		 PMID:17531978 GO_REF:0000107 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930 		JBrowse link
G WNT6 Wnt family member 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11948913) Ensembl
MGI		 PMID:11948913 GO_REF:0000107 NCBI chr2B:106,119,740...106,134,317
Ensembl chr2B:224,714,229...224,728,171 		JBrowse link
brain segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7903221) Ensembl
MGI		 PMID:7903221 GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within ISO (PMID:9367425) MGI PMID:9367425 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7925021) Ensembl
MGI		 PMID:7925021 GO_REF:0000107 NCBI chr20:37,023,988...37,027,446
Ensembl chr20:38,127,722...38,128,693 		JBrowse link
central nervous system segmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZIC2 Zic family member 2 involved_in ISO (PMID:17490632) MGI PMID:17490632 NCBI chr13:81,151,669...81,156,648 JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRG1 adhesion G protein-coupled receptor G1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24531968) Ensembl
MGI		 PMID:24531968 GO_REF:0000107 NCBI chr16:37,896,177...37,942,040
Ensembl chr16:57,036,425...57,074,221 		JBrowse link
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:23431145) MGI PMID:23431145 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G DMRTA2 DMRT like family A2 acts_upstream_of_or_within ISO (PMID:22923088)
(PMID:23056351)		 MGI PMID:22923088 PMID:23056351 NCBI chr 1:49,659,379...49,665,262 JBrowse link
G EMX1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:15147765) MGI PMID:15147765 NCBI chr2A:72,969,693...73,030,427 JBrowse link
G EMX2 empty spiracles homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15147765)
(PMID:12764040)		 Ensembl
MGI		 PMID:12764040 PMID:15147765 GO_REF:0000107 NCBI chr10:114,124,759...114,132,109
Ensembl chr10:117,551,451...117,557,972 		JBrowse link
G EOMES eomesodermin involved_in
acts_upstream_of_or_within		 ISO (PMID:30186101)
(PMID:23431145)		 MGI PMID:23431145 PMID:30186101 NCBI chr 3:27,601,829...27,608,701
Ensembl chr 3:27,925,086...27,930,274 		JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (PMID:17828260) MGI PMID:17828260 NCBI chr 5:21,773,283...21,785,746
Ensembl chr 5:21,910,463...21,918,776 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12764040)
(PMID:23431145)		 Ensembl
MGI		 PMID:12764040 PMID:23431145 GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G TRA2B transformer 2 beta homolog involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24586484) Ensembl
MGI		 PMID:24586484 GO_REF:0000107 NCBI chr 3:182,942,623...182,963,938
Ensembl chr 3:191,414,777...191,436,103 		JBrowse link
compartment pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12001066) Ensembl
MGI		 PMID:12001066 GO_REF:0000107 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759 		JBrowse link
G DLL3 delta like canonical Notch ligand 3 acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chr19:36,597,420...36,607,021 JBrowse link
G LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase acts_upstream_of_or_within ISO (PMID:12001066) MGI PMID:12001066 NCBI chr 7:2,781,493...2,790,936 JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12001066) Ensembl
MGI		 PMID:12001066 GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:18257070) MGI PMID:18257070 NCBI chr 8:40,507,027...40,555,053 JBrowse link
detection of nodal flow term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chr 7:48,451,329...48,596,991
Ensembl chr 7:48,545,432...48,701,736 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chr 4:80,295,243...80,365,271
Ensembl chr 4:91,019,734...91,086,775 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31887266) Ensembl
MGI		 PMID:31887266 GO_REF:0000107 NCBI chr17:43,481,043...43,485,189
Ensembl chr17:48,214,392...48,217,773 		JBrowse link
determination of bilateral symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15731404) Ensembl
MGI		 PMID:15731404 GO_REF:0000107 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168 		JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:64,810,498...64,843,705
Ensembl chr16:84,154,130...84,184,914 		JBrowse link
G DNAAF19 dynein axonemal assembly factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:12,416,623...12,423,251
Ensembl chr17:12,589,984...12,595,664 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18043505) Ensembl
MGI		 PMID:18043505 GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
determination of dorsal identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:14,552,062...14,559,632
Ensembl chr 9:15,063,766...15,066,776 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:9660951) BHF-UCL PMID:9660951 NCBI chr15:11,213,870...11,230,619 JBrowse link
G GREM2 gremlin 2, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:216,037,977...216,163,020
Ensembl chr 1:221,026,605...221,027,111 		JBrowse link
G NBL1 NBL1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,599,121...18,613,305
Ensembl chr 1:19,641,279...19,656,431 		JBrowse link
determination of heart left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:15750185) MGI PMID:15750185 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G DAND5 DAN domain BMP antagonist family member 5 involved_in ISO (PMID:15466485) BHF-UCL PMID:15466485 NCBI chr19:12,529,830...12,536,052 JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11076684) Ensembl
MGI		 PMID:11076684 GO_REF:0000107 NCBI chr 5:149,876,970...149,880,269
Ensembl chr 5:155,875,935...155,878,166 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:9576835) MGI PMID:9576835 NCBI chr 4:165,755,000...165,758,735 JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18043505) Ensembl
MGI		 PMID:18043505 GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G MMP21 matrix metallopeptidase 21 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:122,325,909...122,338,047
Ensembl chr10:126,591,824...126,601,001 		JBrowse link
G ODAD3 outer dynein arm docking complex subunit 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25192045) Ensembl
MGI		 PMID:25192045 GO_REF:0000107 NCBI chr19:10,967,913...10,982,032
Ensembl chr19:11,678,306...11,693,332 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10349618) Ensembl
MGI		 PMID:10349618 GO_REF:0000107 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595 		JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chr 3:129,753,399...129,795,300 JBrowse link
determination of left/right asymmetry in lateral mesoderm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G DAND5 DAN domain BMP antagonist family member 5 involved_in ISO (PMID:15466485) BHF-UCL PMID:15466485 NCBI chr19:12,529,830...12,536,052 JBrowse link
G NODAL nodal growth differentiation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMAD2 SMAD family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
determination of left/right asymmetry in nervous system term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH11 dynein axonemal heavy chain 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18414654) Ensembl
MGI		 PMID:18414654 GO_REF:0000107 NCBI chr 7:22,228,345...22,585,681
Ensembl chr 7:21,540,932...21,897,485 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
determination of left/right symmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15531373) Ensembl
MGI		 PMID:15531373 GO_REF:0000107 NCBI chr2B:44,994,175...45,133,490
Ensembl chr2B:162,234,823...162,297,805 		JBrowse link
G ACVR1C activin A receptor type 1C NOT|acts_upstream_of_or_within ISO (PMID:15485907) MGI PMID:15485907 NCBI chr2B:44,785,808...44,883,977
Ensembl chr2B:162,034,161...162,124,151 		JBrowse link
G ACVR2A activin A receptor type 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16991118) Ensembl
MGI		 PMID:16991118 GO_REF:0000107 NCBI chr2B:11,933,683...12,020,287
Ensembl chr2B:152,253,826...152,288,385 		JBrowse link
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:9242489)
(PMID:16991118)		 MGI PMID:9242489 PMID:16991118 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063 		JBrowse link
G ALG5 ALG5 dolichyl-phosphate beta-glucosyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804) Ensembl
MGI		 PMID:15755804 GO_REF:0000107 NCBI chr13:18,156,978...18,207,970
Ensembl chr13:36,587,531...36,637,238 		JBrowse link
G ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 9:69,818,669...69,886,618
Ensembl chr 9:97,941,935...98,005,795 		JBrowse link
G AP1B1 adaptor related protein complex 1 subunit beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr22:10,383,036...10,443,655
Ensembl chr22:28,189,831...28,285,007 		JBrowse link
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr 3:91,044,332...91,121,686
Ensembl chr 3:97,725,136...97,799,932 		JBrowse link
G BICC1 BicC family RNA binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr10:55,044,812...55,366,668
Ensembl chr10:57,264,973...57,583,404 		JBrowse link
G C1H1orf127 chromosome 1 C1orf127 homolog acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr 1:9,707,483...9,725,888
Ensembl chr 1:10,929,614...10,966,254 		JBrowse link
G CC2D2A coiled-coil and C2 domain containing 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:24947469)		 Ensembl
MGI		 PMID:24947469 PMID:25807483 GO_REF:0000107 NCBI chr 4:9,904,237...10,047,440
Ensembl chr 4:15,204,326...15,349,281 		JBrowse link
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28289722)
(PMID:25807483)		 Ensembl
MGI		 PMID:25807483 PMID:28289722 GO_REF:0000107 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit acts_upstream_of_or_within ISO (PMID:28182636) MGI PMID:28182636 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565 		JBrowse link
G CEP290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044 		JBrowse link
G CFAP53 cilia and flagella associated protein 53 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:43,597,731...43,647,238
Ensembl chr18:46,955,364...46,994,771 		JBrowse link
G CFC1B cryptic, EGF-CFC family member 1B acts_upstream_of_or_within ISO (PMID:25807483)
(PMID:10521397)		 MGI PMID:10521397 PMID:25807483 NCBI chr2B:29,354,004...29,362,161 JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15750185) UniProt PMID:15750185 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G DAAM2 dishevelled associated activator of morphogenesis 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24091014) Ensembl
MGI		 PMID:24091014 GO_REF:0000107 NCBI chr 6:39,374,565...39,488,843
Ensembl chr 6:40,684,695...40,799,395 		JBrowse link
G DAND5 DAN domain BMP antagonist family member 5 acts_upstream_of_or_within ISO (PMID:15466485) MGI PMID:15466485 NCBI chr19:12,529,830...12,536,052 JBrowse link
G DAW1 dynein assembly factor with WD repeats 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28289722)
(PMID:25807483)		 Ensembl
MGI		 PMID:25807483 PMID:28289722 GO_REF:0000107 NCBI chr2B:115,110,201...115,164,889
Ensembl chr2B:233,919,673...233,973,529 		JBrowse link
G DISP1 dispatched RND transporter family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804)
(PMID:12421714)		 Ensembl
MGI		 PMID:12421714 PMID:15755804 GO_REF:0000107 NCBI chr 1:198,488,047...198,679,013
Ensembl chr 1:203,628,338...203,692,218 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12730124) Ensembl
MGI		 PMID:12730124 GO_REF:0000107 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759 		JBrowse link
G DNAAF19 dynein axonemal assembly factor 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:12,416,623...12,423,251
Ensembl chr17:12,589,984...12,595,664 		JBrowse link
G DNAAF3 dynein axonemal assembly factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr19:52,199,690...52,208,648
Ensembl chr19:60,894,180...60,902,686 		JBrowse link
G DNAAF4 dynein axonemal assembly factor 4 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (PMID:25807483) UniProt
Ensembl
TreeGrafter
MGI		 PMID:25807483 GO_REF:0000024 GO_REF:0000107 GO_REF:0000118 NCBI chr15:34,382,064...34,469,432
Ensembl chr15:52,711,349...52,791,281 		JBrowse link
G DNAH11 dynein axonemal heavy chain 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27340223)
(PMID:9353118)
(PMID:10556073)
(PMID:25807483)
(PMID:12142464), (PMID:18022865), (PMID:22184204), (PMID:22499950)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:9353118 PMID:10556073 PMID:12142464 PMID:18022865 PMID:22184204 More... GO_REF:0000107 MGI:48750 NCBI chr 7:22,228,345...22,585,681
Ensembl chr 7:21,540,932...21,897,485 		JBrowse link
G DNAH5 dynein axonemal heavy chain 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11912187)
(PMID:25807483)
(PMID:28289722)
(PMID:11788826), (PMID:17515466), (PMID:22499950)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:11788826 PMID:11912187 PMID:17515466 PMID:22499950 PMID:25807483 More... GO_REF:0000107 NCBI chr 5:13,989,114...14,316,855
Ensembl chr 5:13,851,391...14,093,358 		JBrowse link
G DNAI1 dynein axonemal intermediate chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:11231901), (PMID:17515466), (PMID:22499950)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:11231901 PMID:17515466 PMID:22499950 PMID:25807483 GO_REF:0000107 NCBI chr 9:34,295,010...34,357,331
Ensembl chr 9:35,104,297...35,167,454 		JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18950741) Ensembl
SYSCILIA_CCNET		 PMID:18950741 GO_REF:0000107 NCBI chr17:68,212,341...68,253,732
Ensembl chr17:73,770,753...73,811,845 		JBrowse link
G DPCD deleted in primary ciliary dyskinesia homolog (mouse) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21746835) Ensembl
MGI		 PMID:21746835 GO_REF:0000107 NCBI chr10:98,190,415...98,212,857
Ensembl chr10:101,663,384...101,684,812 		JBrowse link
G DRC1 dynein regulatory complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr2A:26,399,275...26,453,518
Ensembl chr2A:26,491,900...26,545,640 		JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804), (PMID:16061793)
(PMID:16229832), (PMID:25807483)		 Ensembl
MGI		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:25807483 GO_REF:0000107 NCBI chr11:98,051,788...98,425,676
Ensembl chr11:101,536,471...101,909,194 		JBrowse link
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15371312) Ensembl
MGI		 PMID:15371312 GO_REF:0000107 NCBI chr2A:43,858,368...43,912,262
Ensembl chr2A:44,706,777...44,742,724 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15329346) Ensembl
MGI		 PMID:15329346 GO_REF:0000107 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10411502) Ensembl
MGI		 PMID:10411502 GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11493558) Ensembl
MGI		 PMID:11493558 GO_REF:0000107 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949 		JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12642485) Ensembl
MGI		 PMID:12642485 GO_REF:0000107 NCBI chr 8:141,240,691...141,244,381
Ensembl chr 8:144,225,933...144,232,736 		JBrowse link
G FOXJ1 forkhead box J1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr17:70,084,920...70,089,865
Ensembl chr17:75,638,634...75,641,666 		JBrowse link
G GAS8 growth arrest specific 8 acts_upstream_of_or_within ISO (PMID:27472056) MGI PMID:27472056 NCBI chr16:70,777,446...70,806,437
Ensembl chr16:90,444,141...90,467,849 		JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884 		JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804) Ensembl
MGI		 PMID:15755804 GO_REF:0000107 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406 		JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500 		JBrowse link
G IFT74 intraflagellar transport 74 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 9:26,802,459...26,912,292
Ensembl chr 9:27,415,565...27,514,558 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:10804177)
(PMID:15755804)		 MGI PMID:10804177 PMID:15755804 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:10220415)		 MGI PMID:10220415 PMID:15755804 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431 		JBrowse link
G LOC100969502 left-right determination factor 1 involved_in ISO (PMID:9708732) BHF-UCL PMID:9708732 NCBI chr 1:201,347,411...201,351,295
Ensembl chr 1:206,348,419...206,350,787 		JBrowse link
G LOC100973318 outer dynein arm-docking complex subunit 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:23849778)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:23849778 PMID:25807483 GO_REF:0000107 NCBI chr10:27,959,535...28,133,143
Ensembl chr10:28,320,425...28,502,925 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21045211)
(PMID:19776033)		 Ensembl
MGI		 PMID:19776033 PMID:21045211 GO_REF:0000107 NCBI chr17:52,281,443...52,295,919
Ensembl chr17:57,137,254...57,151,328 		JBrowse link
G MMP21 matrix metallopeptidase 21 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr10:122,325,909...122,338,047
Ensembl chr10:126,591,824...126,601,001 		JBrowse link
G NEK8 NIMA related kinase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr17:28,033,001...28,048,157
Ensembl chr17:28,539,621...28,550,860 		JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15329346) Ensembl
MGI		 PMID:15329346 GO_REF:0000107 NCBI chr 4:7,958,218...7,961,844
Ensembl chr 4:13,258,949...13,262,458 		JBrowse link
G NME7 NME/NM23 family member 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21746835) MGI
Ensembl		 PMID:21746835 GO_REF:0000107 NCBI chr 1:144,620,719...144,850,230
Ensembl chr 1:148,343,026...148,572,499 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16496285)
(PMID:12642485), (PMID:12654299)
(PMID:15466485)
(PMID:28182636)
(PMID:11311163)
(PMID:12231623)		 Ensembl
MGI		 PMID:11311163 PMID:12231623 PMID:12642485 PMID:12654299 PMID:15466485 More... GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7789282)
(PMID:12730124)		 Ensembl
MGI		 PMID:7789282 PMID:12730124 GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G NOTCH2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:12730124) MGI PMID:12730124 NCBI chr 1:82,457,829...82,615,142
Ensembl chr 1:117,538,243...117,612,840 		JBrowse link
G NOTO notochord homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17884984), (PMID:22357932)
(PMID:20350929)		 Ensembl
MGI		 PMID:17884984 PMID:20350929 PMID:22357932 GO_REF:0000107 NCBI chr2A:73,254,440...73,265,315
Ensembl chr2A:74,744,181...74,752,950 		JBrowse link
G NPHP3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr 3:129,753,399...129,795,300 JBrowse link
G ODAD3 outer dynein arm docking complex subunit 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483)
(PMID:31383820)
(PMID:25192045)		 Ensembl
MGI
SYSCILIA_CCNET		 PMID:25192045 PMID:25807483 PMID:31383820 GO_REF:0000107 NCBI chr19:10,967,913...10,982,032
Ensembl chr19:11,678,306...11,693,332 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502 		JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10809672) Ensembl
MGI		 PMID:10809672 GO_REF:0000107 NCBI chr15:80,029,225...80,226,027
Ensembl chr15:99,312,512...99,460,444 		JBrowse link
G PIERCE1 piercer of microtubule wall 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27305836) Ensembl
MGI		 PMID:27305836 GO_REF:0000107 NCBI chr 9:106,635,911...106,641,274
Ensembl chr 9:135,628,471...135,633,837 		JBrowse link
G PIERCE2 piercer of microtubule wall 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:34,379,792...34,390,023
Ensembl chr15:52,702,057...52,712,290 		JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:12397115)
(PMID:9708732)
(PMID:11493526), (PMID:24091014)
(PMID:10499586)
(PMID:10498698)
(PMID:10572050)		 MGI
BHF-UCL		 PMID:9708732 PMID:10498698 PMID:10499586 PMID:10572050 PMID:11493526 More... NCBI chr 4:103,112,624...103,137,356 JBrowse link
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr 7:48,451,329...48,596,991
Ensembl chr 7:48,545,432...48,701,736 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel acts_upstream_of_or_within ISO (PMID:12062060) MGI PMID:12062060 NCBI chr 4:80,295,243...80,365,271
Ensembl chr 4:91,019,734...91,086,775 		JBrowse link
G PSKH1 protein serine kinase H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr16:48,234,877...48,271,069
Ensembl chr16:67,637,855...67,658,256 		JBrowse link
G RFX3 regulatory factor X3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15121860) Ensembl
MGI		 PMID:15121860 GO_REF:0000107 NCBI chr 9:3,024,016...3,332,266
Ensembl chr 9:3,223,405...3,398,839 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17531978) Ensembl
MGI		 PMID:17531978 GO_REF:0000107 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930 		JBrowse link
G RPGRIP1L RPGRIP1 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17553904) Ensembl
MGI		 PMID:17553904 GO_REF:0000107 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174 		JBrowse link
G RTTN rotatin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11900971) Ensembl
MGI		 PMID:11900971 GO_REF:0000107 NCBI chr18:63,381,953...63,584,937
Ensembl chr18:66,674,597...66,874,104 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10385121), (PMID:10411502), (PMID:10500184) Ensembl
MGI		 PMID:10385121 PMID:10411502 PMID:10500184 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:12421714)
(PMID:15755804)		 MGI PMID:12421714 PMID:15755804 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr 1:46,551,592...46,639,668
Ensembl chr 1:48,072,728...48,137,071 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16155214) Ensembl
MGI		 PMID:16155214 GO_REF:0000107 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472 		JBrowse link
G TBC1D32 TBC1 domain family member 32 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25807483) Ensembl
MGI		 PMID:25807483 GO_REF:0000107 NCBI chr 6:118,884,928...119,139,138
Ensembl chr 6:123,022,008...123,273,810 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16556915) MGI PMID:16556915 NCBI chr22:2,521,080...2,541,267 JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:16705179) MGI PMID:16705179 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31887266) Ensembl
MGI		 PMID:31887266 GO_REF:0000107 NCBI chr17:43,481,043...43,485,189
Ensembl chr17:48,214,392...48,217,773 		JBrowse link
G TMEM67 transmembrane protein 67 acts_upstream_of_or_within ISO (PMID:25807483) MGI PMID:25807483 NCBI chr 8:90,378,623...90,442,904
Ensembl chr 8:92,324,402...92,387,437 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16291790) Ensembl
MGI		 PMID:16291790 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:24091014) MGI PMID:24091014 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15384171)
(PMID:16496285)		 MGI
Ensembl		 PMID:15384171 PMID:16496285 GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
determination of liver left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:64,810,498...64,843,705
Ensembl chr16:84,154,130...84,184,914 		JBrowse link
G NPHP3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chr 3:129,753,399...129,795,300 JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:80,295,243...80,365,271
Ensembl chr 4:91,019,734...91,086,775 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
determination of pancreatic left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:64,810,498...64,843,705
Ensembl chr16:84,154,130...84,184,914 		JBrowse link
G NPHP3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chr 3:129,753,399...129,795,300 JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr 3:129,753,399...129,795,300 JBrowse link
dorsal/ventral axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10330403) Ensembl
MGI		 PMID:10330403 GO_REF:0000107 Ensembl chr16:278,239...337,891 JBrowse link
G AXIN2 axin 2 ISO RGD PMID:9566905 RGD:68736 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12923052) Ensembl
MGI		 PMID:12923052 GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12923052) Ensembl
MGI		 PMID:12923052 GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738) MGI PMID:18985738 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MDFI MyoD family inhibitor involved_in ISO (PMID:11238923) UniProt PMID:11238923 NCBI chr 6:41,222,123...41,239,474
Ensembl chr 6:42,527,805...42,545,030 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10588713) Ensembl
MGI		 PMID:10588713 GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G SENP2 SUMO specific peptidase 2 ISO RGD PMID:10944533 RGD:1299408 NCBI chr 3:182,606,922...182,655,518
Ensembl chr 3:191,086,488...191,129,572 		JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in ISO (PMID:9192640) UniProt PMID:9192640 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G VAX2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11830578)
(PMID:11830579)		 Ensembl
MGI		 PMID:11830578 PMID:11830579 GO_REF:0000107 NCBI chr2A:70,964,829...70,997,702
Ensembl chr2A:72,078,829...72,111,463 		JBrowse link
G WNT3 Wnt family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:10,685,160...10,741,402
Ensembl chr17:10,862,310...10,918,865 		JBrowse link
dorsal/ventral neural tube patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15218525) Ensembl
MGI		 PMID:15218525 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18590716)
(PMID:18003640)		 Ensembl
MGI		 PMID:18003640 PMID:18590716 GO_REF:0000107 NCBI chr19:18,009,505...18,021,772
Ensembl chr19:18,980,269...18,992,170 		JBrowse link
G FOXA1 forkhead box A1 acts_upstream_of_or_within ISO (PMID:23383217) MGI PMID:23383217 NCBI chr14:18,347,284...18,352,705 JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:9226455)
(PMID:23383217)
(PMID:18590716)		 MGI PMID:9226455 PMID:18590716 PMID:23383217 NCBI chr20:22,519,942...22,524,262 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940), (PMID:17504941)
(PMID:17504941)		 MGI PMID:17504940 PMID:17504941 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18590716), (PMID:19286674)
(PMID:9247260)		 Ensembl
MGI		 PMID:9247260 PMID:18590716 PMID:19286674 GO_REF:0000107 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9226455) MGI
Ensembl		 PMID:9226455 GO_REF:0000107 NCBI chr14:75,390,119...75,392,050
Ensembl chr14:94,718,269...94,720,404 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within
involved_in		 ISO (PMID:18590716), (PMID:19286674)
(PMID:21209331)		 MGI
BHF-UCL		 PMID:18590716 PMID:19286674 PMID:21209331 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431 		JBrowse link
G MNX1 motor neuron and pancreas homeobox 1 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr 7:148,622,701...148,628,532 JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr 1:17,589,513...17,707,442
Ensembl chr 1:18,639,641...18,756,952 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557208) Ensembl
MGI		 PMID:10557208 GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G PSEN2 presenilin 2 acts_upstream_of_or_within ISO (PMID:10557208) MGI PMID:10557208 NCBI chr 1:202,328,987...202,354,440
Ensembl chr 1:207,320,937...207,346,295 		JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9262482) Ensembl
MGI		 PMID:9262482 GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in ISO (PMID:7720556) UniProt PMID:7720556 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107 		JBrowse link
G RNF220 ring finger protein 220 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30177510) Ensembl
MGI		 PMID:30177510 GO_REF:0000107 NCBI chr 1:43,707,764...43,954,197
Ensembl chr 1:45,083,499...45,319,721 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17442700), (PMID:18590716)
(PMID:17504941)		 Ensembl
MGI		 PMID:17442700 PMID:17504941 PMID:18590716 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18590716) MGI PMID:18590716 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G TCTN1 tectonic family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16357211) Ensembl
MGI		 PMID:16357211 GO_REF:0000107 NCBI chr12:108,182,496...108,232,202
Ensembl chr12:111,577,755...111,610,754 		JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19286674) Ensembl
MGI		 PMID:19286674 GO_REF:0000107 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8299937) Ensembl
MGI		 PMID:8299937 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APC APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO (PMID:12645927) MGI PMID:12645927 NCBI chr 5:108,070,697...108,208,273
Ensembl chr 5:113,904,352...114,009,709 		JBrowse link
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr 3:91,044,332...91,121,686
Ensembl chr 3:97,725,136...97,799,932 		JBrowse link
G AXIN1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18316368) Ensembl
MGI		 PMID:18316368 GO_REF:0000107 Ensembl chr16:278,239...337,891 JBrowse link
G BMP1 bone morphogenetic protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:21,410,139...21,457,144
Ensembl chr 8:18,349,836...18,396,796 		JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15673568) Ensembl
MGI		 PMID:15673568 GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15673568) Ensembl
MGI		 PMID:15673568 GO_REF:0000107 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848 		JBrowse link
G CHRD chordin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12810603) MGI
TreeGrafter		 PMID:12810603 GO_REF:0000118 NCBI chr 3:181,417,140...181,460,236
Ensembl chr 3:189,898,856...189,908,573 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15708565) Ensembl
MGI		 PMID:15708565 GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G DISP1 dispatched RND transporter family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804) Ensembl
MGI		 PMID:15755804 GO_REF:0000107 NCBI chr 1:198,488,047...198,679,013
Ensembl chr 1:203,628,338...203,692,218 		JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15755804), (PMID:16061793)
(PMID:16229832)
(PMID:21552265)		 Ensembl
MGI		 PMID:15755804 PMID:16061793 PMID:16229832 PMID:21552265 GO_REF:0000107 NCBI chr11:98,051,788...98,425,676
Ensembl chr11:101,536,471...101,909,194 		JBrowse link
G EDN1 endothelin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15110048) Ensembl
MGI		 PMID:15110048 GO_REF:0000107 NCBI chr 6:12,076,312...12,142,861
Ensembl chr 6:12,462,718...12,503,545 		JBrowse link
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:8684466), (PMID:9362463) MGI PMID:8684466 PMID:9362463 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G FKBP8 FKBP prolyl isomerase 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15105374) Ensembl
MGI		 PMID:15105374 GO_REF:0000107 NCBI chr19:18,009,505...18,021,772
Ensembl chr19:18,980,269...18,992,170 		JBrowse link
G FOXA2 forkhead box A2 acts_upstream_of_or_within ISO (PMID:10498685) MGI PMID:10498685 NCBI chr20:22,519,942...22,524,262 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17504940) MGI PMID:17504940 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045 		JBrowse link
G GLI1 GLI family zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16342201) Ensembl
MGI		 PMID:16342201 GO_REF:0000107 NCBI chr12:31,453,759...31,466,194
Ensembl chr12:31,710,057...31,722,473 		JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16342201) Ensembl
MGI		 PMID:16342201 GO_REF:0000107 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14723851)
(PMID:12435629), (PMID:16571630)		 Ensembl
MGI		 PMID:12435629 PMID:14723851 PMID:16571630 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G HHIP hedgehog interacting protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15576403) Ensembl
MGI		 PMID:15576403 GO_REF:0000107 NCBI chr 4:136,989,818...137,085,407
Ensembl chr 4:148,651,597...148,744,619 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11493536) Ensembl
MGI		 PMID:11493536 GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within ISO (PMID:10230789) MGI PMID:10230789 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10230789) Ensembl
MGI		 PMID:10230789 GO_REF:0000107 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:11493536) MGI PMID:11493536 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:15755804)
(PMID:21552265)		 MGI PMID:15755804 PMID:21552265 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117 		JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14603322), (PMID:15755804), (PMID:21552265)
(PMID:16061793)		 Ensembl
MGI		 PMID:14603322 PMID:15755804 PMID:16061793 PMID:21552265 GO_REF:0000107 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406 		JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500 		JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:15755804), (PMID:15930098) MGI PMID:15755804 PMID:15930098 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:15755804) MGI PMID:15755804 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10498685) Ensembl
MGI		 PMID:10498685 GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G LHX2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11165475), (PMID:14566948) Ensembl
MGI		 PMID:11165475 PMID:14566948 GO_REF:0000107 NCBI chr 9:95,132,445...95,154,130
Ensembl chr 9:123,655,845...123,676,796 		JBrowse link
G LHX3 LIM homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18037398) Ensembl
MGI		 PMID:18037398 GO_REF:0000107 NCBI chr 9:107,271,131...107,280,001
Ensembl chr 9:136,252,880...136,260,366 		JBrowse link
G LMX1B LIM homeobox transcription factor 1 beta involved_in ISO (PMID:10767331) UniProt PMID:10767331 NCBI chr 9:97,730,850...97,820,554
Ensembl chr 9:126,240,722...126,322,420 		JBrowse link
G LOC100990531 uncharacterized LOC100990531 acts_upstream_of_or_within ISO (PMID:14566948)
(PMID:15893304)		 MGI PMID:14566948 PMID:15893304 NCBI chr14:9,545,147...9,572,309 JBrowse link
G LRP4 LDL receptor related protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16207730)
(PMID:17119023)		 Ensembl
MGI		 PMID:16207730 PMID:17119023 GO_REF:0000107 NCBI chr11:46,808,090...46,868,649
Ensembl chr11:47,366,321...47,411,105 		JBrowse link
G NOG noggin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092 		JBrowse link
G NOTO notochord homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8155581) Ensembl
MGI		 PMID:8155581 GO_REF:0000107 NCBI chr2A:73,254,440...73,265,315
Ensembl chr2A:74,744,181...74,752,950 		JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:12652306) MGI PMID:12652306 NCBI chr14:37,370,926...37,381,610
Ensembl chr14:55,641,349...55,651,012 		JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16423343) Ensembl
MGI		 PMID:16423343 GO_REF:0000107 NCBI chr20:17,983,277...18,019,441
Ensembl chr20:17,962,123...17,994,486 		JBrowse link
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15878992)
(PMID:15548580)		 Ensembl
MGI		 PMID:15548580 PMID:15878992 GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G PROP1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:15459176)
(PMID:12183375)		 MGI PMID:12183375 PMID:15459176 NCBI chr 5:173,086,726...173,090,461 JBrowse link
G PTCH1 patched 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15576403) Ensembl
MGI		 PMID:15576403 GO_REF:0000107 NCBI chr 9:66,542,675...66,616,820
Ensembl chr 9:94,668,365...94,741,453 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21552265) Ensembl
MGI		 PMID:21552265 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:16571630)
(PMID:15755804)		 MGI PMID:15755804 PMID:16571630 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G SP8 Sp8 transcription factor acts_upstream_of_or_within ISO (PMID:14597661) MGI PMID:14597661 NCBI chr 7:21,456,649...21,463,844 JBrowse link
G TBX20 T-box transcription factor 20 acts_upstream_of_or_within ISO (PMID:15901664) MGI PMID:15901664 NCBI chr 7:35,855,969...35,878,533 JBrowse link
G TGIF1 TGFB induced factor homeobox 1 acts_upstream_of_or_within ISO (PMID:17082251) MGI PMID:17082251 NCBI chr18:10,819,015...10,830,282
Ensembl chr18:13,128,359...13,139,145 		JBrowse link
G TLL1 tolloid like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:158,068,424...158,300,856
Ensembl chr 4:170,157,417...170,384,260 		JBrowse link
G WNT7A Wnt family member 7A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7885472), (PMID:9362463) Ensembl
MGI		 PMID:7885472 PMID:9362463 GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
embryonic axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (PMID:11118896) MGI PMID:11118896 NCBI chr 3:181,417,140...181,460,236
Ensembl chr 3:189,898,856...189,908,573 		JBrowse link
G CHRDL1 chordin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:99,781,730...99,915,778
Ensembl chr  X:110,251,525...110,375,289 		JBrowse link
G CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 involved_in ISO PMID:15843474 UniProt PMID:15843474 RGD:8554075 NCBI chr  X:61,537,949...61,543,545
Ensembl chr  X:71,621,785...71,625,702 		JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:51,652,318...51,952,256
Ensembl chr 7:51,895,807...52,097,841 		JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9230313) Ensembl
MGI		 PMID:9230313 GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G FRAT1 FRAT regulator of WNT signaling pathway 1 acts_upstream_of_or_within ISO (PMID:10534617) MGI PMID:10534617 NCBI chr10:93,943,745...93,947,162 JBrowse link
G FZD5 frizzled class receptor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr 1:46,551,592...46,639,668
Ensembl chr 1:48,072,728...48,137,071 		JBrowse link
G WNT1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583 		JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
embryonic heart tube anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16314491) Ensembl
MGI		 PMID:16314491 GO_REF:0000107 NCBI chr20:6,765,161...6,777,728
Ensembl chr20:6,546,173...6,558,610 		JBrowse link
G FOXH1 forkhead box H1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15363409) Ensembl
MGI		 PMID:15363409 GO_REF:0000107 NCBI chr 8:141,240,691...141,244,381
Ensembl chr 8:144,225,933...144,232,736 		JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136932) MGI PMID:9136932 NCBI chr 8:7,442,921...7,526,731 JBrowse link
embryonic heart tube left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CIMAP3 ciliary microtubule associated protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20643351) Ensembl
MGI		 PMID:20643351 GO_REF:0000107 NCBI chr 1:113,991,254...113,997,982
Ensembl chr 1:126,349,244...126,355,968 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (PMID:21209331) CACAO PMID:21209331 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117 		JBrowse link
G INVS inversin acts_upstream_of_or_within ISO (PMID:9192865) MGI PMID:9192865 NCBI chr 9:71,185,345...71,395,015
Ensembl chr 9:99,329,528...99,508,260 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G NKX2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9192865) Ensembl
MGI		 PMID:9192865 GO_REF:0000107 NCBI chr 5:168,584,197...168,589,406
Ensembl chr 5:175,492,288...175,495,514 		JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:17234970) BHF-UCL PMID:17234970 NCBI chr 4:103,112,624...103,137,356 JBrowse link
embryonic pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10049573) Ensembl
MGI		 PMID:10049573 GO_REF:0000107 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G DISP1 dispatched RND transporter family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12372301) Ensembl
MGI		 PMID:12372301 GO_REF:0000107 NCBI chr 1:198,488,047...198,679,013
Ensembl chr 1:203,628,338...203,692,218 		JBrowse link
G DOP1B DOP1 leucine zipper like protein B involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:22,527,124...22,664,287
Ensembl chr21:35,886,846...36,022,790 		JBrowse link
G EFNB1 ephrin B1 acts_upstream_of_or_within ISO (PMID:15037550) MGI PMID:15037550 NCBI chr  X:58,075,744...58,088,838
Ensembl chr  X:68,139,078...68,152,131 		JBrowse link
G ERBB4 erb-b2 receptor tyrosine kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:98,625,630...99,795,371
Ensembl chr2B:217,069,644...218,272,006 		JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17522155)
(PMID:16618415)		 Ensembl
MGI		 PMID:16618415 PMID:17522155 GO_REF:0000107 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16618415) MGI PMID:16618415 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18582859) Ensembl
MGI		 PMID:18582859 GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G NANOG Nanog homeobox involved_in ISO (PMID:15108323) HGNC-UCL PMID:15108323 NCBI chr12:7,913,037...7,919,715 JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311163) Ensembl
MGI		 PMID:11311163 GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G NOTO notochord homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15550757) Ensembl
MGI		 PMID:15550757 GO_REF:0000107 NCBI chr2A:73,254,440...73,265,315
Ensembl chr2A:74,744,181...74,752,950 		JBrowse link
G OOEP oocyte expressed protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18191828) MGI
TreeGrafter		 PMID:18191828 GO_REF:0000118 NCBI chr 6:71,195,619...71,197,040
Ensembl chr 6:74,484,764...74,511,331 		JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr2B:84,076,945...84,166,385
Ensembl chr2B:201,983,321...202,064,467 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:95,998,718...96,003,843
Ensembl chr  X:106,377,932...106,381,193 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930 		JBrowse link
G RIPPLY3 ripply transcriptional repressor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:23,368,472...23,379,560
Ensembl chr21:36,723,931...36,734,382 		JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16751105) Ensembl
MGI		 PMID:16751105 GO_REF:0000107 NCBI chr2B:86,518,043...86,720,212
Ensembl chr2B:204,406,887...204,599,539 		JBrowse link
G SIM2 SIM bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:12024028) MGI PMID:12024028 NCBI chr21:23,060,640...23,109,496 JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185 		JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:17984226) MGI PMID:17984226 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10835630) Ensembl
MGI		 PMID:10835630 GO_REF:0000107 NCBI chr11:108,938,414...109,133,819
Ensembl chr11:112,780,380...112,977,164 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
epithelial cilium movement involved in determination of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565 		JBrowse link
G CFAP45 cilia and flagella associated protein 45 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:33139725) Ensembl
MGI		 PMID:33139725 GO_REF:0000107 NCBI chr 1:135,223,885...135,251,829
Ensembl chr 1:139,144,634...139,172,558 		JBrowse link
G CFAP53 cilia and flagella associated protein 53 acts_upstream_of_or_within ISO (PMID:33347437) MGI PMID:33347437 NCBI chr18:43,597,731...43,647,238
Ensembl chr18:46,955,364...46,994,771 		JBrowse link
G DNAAF11 dynein axonemal assembly factor 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27353389) Ensembl
MGI		 PMID:27353389 GO_REF:0000107 NCBI chr 8:129,223,591...129,329,535
Ensembl chr 8:132,199,607...132,305,351 		JBrowse link
G DNAH11 dynein axonemal heavy chain 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10549278), (PMID:22102620) Ensembl
MGI		 PMID:10549278 PMID:22102620 GO_REF:0000107 NCBI chr 7:22,228,345...22,585,681
Ensembl chr 7:21,540,932...21,897,485 		JBrowse link
G INVS inversin acts_upstream_of_or_within ISO (PMID:10549278) MGI PMID:10549278 NCBI chr 9:71,185,345...71,395,015
Ensembl chr 9:99,329,528...99,508,260 		JBrowse link
G MEGF8 multiple EGF like domains 8 NOT|acts_upstream_of_or_within ISO (PMID:18043505) MGI PMID:18043505 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G ODAD3 outer dynein arm docking complex subunit 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:31383820) Ensembl
MGI		 PMID:31383820 GO_REF:0000107 NCBI chr19:10,967,913...10,982,032
Ensembl chr19:11,678,306...11,693,332 		JBrowse link
G ODAD4 outer dynein arm docking complex subunit 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27486780) Ensembl
MGI		 PMID:27486780 GO_REF:0000107 NCBI chr17:15,349,353...15,385,293
Ensembl chr17:15,570,316...15,603,787 		JBrowse link
G OFD1 OFD1 centriole and centriolar satellite protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:6,296,597...6,376,197
Ensembl chr  X:13,611,304...13,664,512 		JBrowse link
G RFX3 regulatory factor X3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,024,016...3,332,266
Ensembl chr 9:3,223,405...3,398,839 		JBrowse link
establishment of anatomical structure orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TTC8 tetratricopeptide repeat domain 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:69,446,355...69,502,351
Ensembl chr14:88,802,812...88,857,055 		JBrowse link
establishment of animal organ orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRX4 iroquois homeobox 4 ISO RGD PMID:10882515 RGD:1582291 Ensembl chr 5:1,929,977...1,939,622 JBrowse link
G WNT8A Wnt family member 8A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16256739) Ensembl
MGI		 PMID:16256739 GO_REF:0000107 NCBI chr 5:133,419,324...133,471,094
Ensembl chr 5:139,598,229...139,605,926 		JBrowse link
establishment of left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29317443) Ensembl
MGI		 PMID:29317443 GO_REF:0000107 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362 		JBrowse link
G CFAP45 cilia and flagella associated protein 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:135,223,885...135,251,829
Ensembl chr 1:139,144,634...139,172,558 		JBrowse link
G CFAP52 cilia and flagella associated protein 52 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:42,013,575...42,075,940
Ensembl chr17:46,756,168...46,816,033 		JBrowse link
G DNAAF2 dynein axonemal assembly factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23525783)
(PMID:31107948)		 Ensembl
MGI		 PMID:23525783 PMID:31107948 GO_REF:0000107 NCBI chr14:30,203,426...30,213,629
Ensembl chr14:48,513,696...48,522,800 		JBrowse link
G ENKUR enkurin, TRPC channel interacting protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29257953) Ensembl
MGI		 PMID:29257953 GO_REF:0000107 NCBI chr10:25,156,234...25,236,620
Ensembl chr10:25,526,548...25,606,709 		JBrowse link
G PIERCE1 piercer of microtubule wall 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:106,635,911...106,641,274
Ensembl chr 9:135,628,471...135,633,837 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16720875) Ensembl
MGI		 PMID:16720875 GO_REF:0000107 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:16720875) MGI PMID:16720875 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FEZF1 FEZ family zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16971467) Ensembl
MGI		 PMID:16971467 GO_REF:0000107 NCBI chr 7:114,311,563...114,322,490
Ensembl chr 7:126,995,708...127,005,732 		JBrowse link
G FEZF2 FEZ family zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16971467) Ensembl
MGI		 PMID:16971467 GO_REF:0000107 NCBI chr 3:62,292,878...62,296,987
Ensembl chr 3:63,680,307...63,683,052 		JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:18094027) MGI PMID:18094027 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18094027) Ensembl
MGI		 PMID:18094027 GO_REF:0000107 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16613831) Ensembl
MGI		 PMID:16613831 GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10625551) Ensembl
MGI		 PMID:10625551 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GSX2 GS homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11060228), (PMID:11124115), (PMID:18701439) Ensembl
MGI		 PMID:11060228 PMID:11124115 PMID:18701439 GO_REF:0000107 NCBI chr 4:69,837,643...69,840,101
Ensembl chr 4:76,397,180...76,399,715 		JBrowse link
G NKX2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:10393115), (PMID:11163262), (PMID:11830575) MGI PMID:10393115 PMID:11163262 PMID:11830575
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124115)
(PMID:11050125), (PMID:18701439), (PMID:24528677)		 Ensembl
MGI		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
G SIX3 SIX homeobox 3 involved_in ISO (PMID:18791198) UniProt PMID:18791198 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G TTC21B tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19732765) Ensembl
MGI		 PMID:19732765 GO_REF:0000107 NCBI chr2B:53,140,199...53,220,535
Ensembl chr2B:170,616,444...170,699,471 		JBrowse link
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G PGAP1 post-GPI attachment to proteins inositol deacylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10529425) Ensembl
MGI		 PMID:10529425 GO_REF:0000107 NCBI chr2B:84,076,945...84,166,385
Ensembl chr2B:201,983,321...202,064,467 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24528677) Ensembl
MGI		 PMID:24528677 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G WNT2B Wnt family member 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:115,119,360...115,177,942
Ensembl chr 1:125,173,906...125,230,675 		JBrowse link
G WNT7B Wnt family member 7B involved_in IEA Ensembl GO_REF:0000107 Ensembl chr22:44,988,647...45,044,841 JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAX6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9169845) Ensembl
MGI		 PMID:9169845 GO_REF:0000107 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STC1 stanniocalcin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:23,089,339...23,102,245
Ensembl chr 8:20,023,469...20,036,321 		JBrowse link
heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26295701) Ensembl
MGI		 PMID:26295701 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
heart induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:6,765,161...6,777,728
Ensembl chr20:6,546,173...6,558,610 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G DKK1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:18297060) BHF-UCL PMID:18297060 NCBI chr10:48,950,704...48,953,815
Ensembl chr10:51,084,027...51,089,776 		JBrowse link
G GATA5 GATA binding protein 5 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr20:60,148,359...60,158,886 JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:68,440,626...68,441,935
Ensembl chr15:87,645,768...87,647,210 		JBrowse link
G POU5F1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426 		JBrowse link
G ROBO1 roundabout guidance receptor 1 involved_in ISO (PMID:25691540) BHF-UCL PMID:25691540 NCBI chr 3:78,707,802...79,876,519
Ensembl chr 3:80,581,388...81,569,308 		JBrowse link
G ROBO2 roundabout guidance receptor 2 involved_in ISO (PMID:25691540) BHF-UCL PMID:25691540 NCBI chr 3:76,013,780...77,764,156
Ensembl chr 3:79,030,223...79,632,309 		JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APLNR apelin receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,475,088...52,479,102
Ensembl chr 3:159,967,360...159,968,502 		JBrowse link
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chr 3:91,044,332...91,121,686
Ensembl chr 3:97,725,136...97,799,932 		JBrowse link
G ASB2 ankyrin repeat and SOCS box containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:74,566,607...74,608,905
Ensembl chr14:93,900,914...93,930,527 		JBrowse link
G C2CD3 C2 domain containing 3 centriole elongation regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19004860) Ensembl
MGI		 PMID:19004860 GO_REF:0000107 NCBI chr11:69,085,434...69,244,791 JBrowse link
G CCDC39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362 		JBrowse link
G CCDC40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565 		JBrowse link
G CFC1B cryptic, EGF-CFC family member 1B acts_upstream_of_or_within ISO (PMID:10521397) MGI PMID:10521397 NCBI chr2B:29,354,004...29,362,161 JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:15750185) MGI PMID:15750185 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G CLUAP1 clusterin associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23742838) Ensembl
MGI		 PMID:23742838 GO_REF:0000107 NCBI chr16:2,423,563...2,461,486
Ensembl chr16:3,600,370...3,637,622 		JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:64,810,498...64,843,705
Ensembl chr16:84,154,130...84,184,914 		JBrowse link
G DNAAF19 dynein axonemal assembly factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:12,416,623...12,423,251
Ensembl chr17:12,589,984...12,595,664 		JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:92,469...106,748
Ensembl chr 1:1,292,052...1,301,008 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,255,241...7,264,452
Ensembl chr17:7,242,493...7,251,571 		JBrowse link
G ENG endoglin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:98,934,080...98,973,862
Ensembl chr 9:127,605,608...127,644,641 		JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10411502) Ensembl
MGI		 PMID:10411502 GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G FOXH1 forkhead box H1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:141,240,691...141,244,381
Ensembl chr 8:144,225,933...144,232,736 		JBrowse link
G GATA4 GATA binding protein 4 involved_in ISO (PMID:15310850) BHF-UCL PMID:15310850 NCBI chr 8:7,442,921...7,526,731 JBrowse link
G GJA1 gap junction protein alpha 1 acts_upstream_of_or_within ISO (PMID:9486664) MGI PMID:9486664 NCBI chr 6:119,213,513...119,227,617 JBrowse link
G HAND1 heart and neural crest derivatives expressed 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9500551) Ensembl
MGI		 PMID:9500551 GO_REF:0000107 NCBI chr 5:149,876,970...149,880,269
Ensembl chr 5:155,875,935...155,878,166 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within ISO (PMID:9171826) MGI PMID:9171826 NCBI chr 4:165,755,000...165,758,735 JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14659802) Ensembl
MGI		 PMID:14659802 GO_REF:0000107 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885 		JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18930042) Ensembl
MGI		 PMID:18930042 GO_REF:0000107 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406 		JBrowse link
G IFT52 intraflagellar transport 52 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15930098) Ensembl
MGI		 PMID:15930098 GO_REF:0000107 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500 		JBrowse link
G IFT57 intraflagellar transport 57 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17027958) Ensembl
MGI		 PMID:17027958 GO_REF:0000107 NCBI chr 3:105,287,086...105,348,872
Ensembl chr 3:112,222,128...112,282,069 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G KDM2A lysine demethylase 2A acts_upstream_of_or_within ISO (PMID:25463925) MGI PMID:25463925 NCBI chr11:62,470,549...62,616,135
Ensembl chr11:65,793,464...65,930,498 		JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:10330409) MGI PMID:10330409 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431 		JBrowse link
G LBX1 ladybird homeobox 1 acts_upstream_of_or_within ISO (PMID:12522123) MGI PMID:12522123 NCBI chr10:97,830,026...97,832,751 JBrowse link
G LOC100994139 folate receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:67,268,721...67,275,498
Ensembl chr11:70,492,039...70,498,665 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISO (PMID:16680724) UniProt PMID:16680724 NCBI chr 5:26,480,489...26,650,813
Ensembl chr 5:26,681,700...26,786,426 		JBrowse link
G MESP1 mesoderm posterior bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:68,440,626...68,441,935
Ensembl chr15:87,645,768...87,647,210 		JBrowse link
G MIB1 MIB E3 ubiquitin protein ligase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16000382) Ensembl
MGI		 PMID:16000382 GO_REF:0000107 NCBI chr18:14,944,432...15,113,313
Ensembl chr18:18,641,135...18,740,813 		JBrowse link
G NKX2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16510504)
(PMID:7628699), (PMID:9192865)		 Ensembl
MGI		 PMID:7628699 PMID:9192865 PMID:16510504 GO_REF:0000107 NCBI chr 5:168,584,197...168,589,406
Ensembl chr 5:175,492,288...175,495,514 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16496285) Ensembl
MGI		 PMID:16496285 GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G NOTCH2 notch receptor 2 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chr 1:82,457,829...82,615,142
Ensembl chr 1:117,538,243...117,612,840 		JBrowse link
G NOTO notochord homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17884984) Ensembl
MGI		 PMID:17884984 GO_REF:0000107 NCBI chr2A:73,254,440...73,265,315
Ensembl chr2A:74,744,181...74,752,950 		JBrowse link
G NPHP3 nephrocystin 3 involved_in ISO (PMID:18371931), (PMID:20007846) BHF-UCL PMID:18371931 PMID:20007846 NCBI chr 3:129,753,399...129,795,300 JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17573777) Ensembl
MGI		 PMID:17573777 GO_REF:0000107 NCBI chr20:17,983,277...18,019,441
Ensembl chr20:17,962,123...17,994,486 		JBrowse link
G PKD2 polycystin 2, transient receptor potential cation channel involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:80,295,243...80,365,271
Ensembl chr 4:91,019,734...91,086,775 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557208) Ensembl
MGI		 PMID:10557208 GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10411502), (PMID:10500184) Ensembl
MGI		 PMID:10411502 PMID:10500184 GO_REF:0000107 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17610846) Ensembl
MGI		 PMID:17610846 GO_REF:0000107 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808 		JBrowse link
G SRF serum response factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15929941) Ensembl
MGI		 PMID:15929941 GO_REF:0000107 NCBI chr 6:42,763,099...42,773,332
Ensembl chr 6:44,057,192...44,066,768 		JBrowse link
G STIL STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chr 1:46,551,592...46,639,668
Ensembl chr 1:48,072,728...48,137,071 		JBrowse link
G SUFU SUFU negative regulator of hedgehog signaling involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16155214) Ensembl
MGI		 PMID:16155214 GO_REF:0000107 NCBI chr10:99,107,516...99,231,761
Ensembl chr10:102,571,886...102,696,472 		JBrowse link
G TBX20 T-box transcription factor 20 acts_upstream_of_or_within
involved_in		 ISO (PMID:15843407)
(PMID:15843409)
(PMID:15901664)		 MGI
BHF-UCL		 PMID:15843407 PMID:15843409 PMID:15901664 NCBI chr 7:35,855,969...35,878,533 JBrowse link
G TBX3 T-box transcription factor 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18723448)
(PMID:17460765)		 Ensembl
MGI		 PMID:17460765 PMID:18723448 GO_REF:0000107 NCBI chr12:112,240,050...112,254,299
Ensembl chr12:115,620,002...115,631,316 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856 		JBrowse link
G TMED2 transmembrane p24 trafficking protein 2 acts_upstream_of_or_within ISO (PMID:20178780) MGI PMID:20178780 NCBI chr12:121,169,915...121,183,524
Ensembl chr12:125,397,391...125,410,794 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 involved_in ISO (PMID:11440971) UniProt PMID:11440971 NCBI chr 1:135,754,897...135,783,031
Ensembl chr 1:139,683,745...139,704,281 		JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16291790) Ensembl
MGI		 PMID:16291790 GO_REF:0000107 NCBI chr 1:203,409,294...203,463,214
Ensembl chr 1:208,628,706...208,674,469 		JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19795512) MGI PMID:19795512 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
G ZIC3 Zic family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16496285)
(PMID:15384171)		 MGI
Ensembl		 PMID:15384171 PMID:16496285 GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
left/right axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL13B ARF like GTPase 13B acts_upstream_of_or_within ISO (PMID:22554696) MGI PMID:22554696 NCBI chr 3:91,044,332...91,121,686
Ensembl chr 3:97,725,136...97,799,932 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759 		JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20678497) Ensembl
MGI		 PMID:20678497 GO_REF:0000107 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209 		JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22554696)
(PMID:18930042)		 Ensembl
MGI		 PMID:18930042 PMID:22554696 GO_REF:0000107 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406 		JBrowse link
G IFT25 intraflagellar transport 25 acts_upstream_of_or_within ISO (PMID:22595669) MGI PMID:22595669 NCBI chr 1:53,190,015...53,220,115
Ensembl chr 1:54,785,390...54,814,281 		JBrowse link
G MNS1 meiosis specific nuclear structural 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22396656) Ensembl
MGI		 PMID:22396656 GO_REF:0000107 NCBI chr15:35,377,490...35,433,871
Ensembl chr15:53,714,110...53,750,050 		JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740 		JBrowse link
G NOTCH2 notch receptor 2 involved_in ISO (PMID:12730124) BHF-UCL PMID:12730124 NCBI chr 1:82,457,829...82,615,142
Ensembl chr 1:117,538,243...117,612,840 		JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:15475956) BHF-UCL PMID:15475956 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting involved_in ISO (PMID:21307093) BHF-UCL PMID:21307093 NCBI chr 7:48,451,329...48,596,991
Ensembl chr 7:48,545,432...48,701,736 		JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:9636176) MGI PMID:9636176 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
left/right pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G CLUAP1 clusterin associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23742838) Ensembl
MGI		 PMID:23742838 GO_REF:0000107 NCBI chr16:2,423,563...2,461,486
Ensembl chr16:3,600,370...3,637,622 		JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 NOT|acts_upstream_of_or_within ISO (PMID:21203428) MGI PMID:21203428 NCBI chr 9:860,271...867,704
Ensembl chr 9:1,055,473...1,060,962 		JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:64,810,498...64,843,705
Ensembl chr16:84,154,130...84,184,914 		JBrowse link
G DPCD deleted in primary ciliary dyskinesia homolog (mouse) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20080492) Ensembl
MGI		 PMID:20080492 GO_REF:0000107 NCBI chr10:98,190,415...98,212,857
Ensembl chr10:101,663,384...101,684,812 		JBrowse link
G FOXJ1 forkhead box J1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10873152) Ensembl
MGI		 PMID:10873152 GO_REF:0000107 NCBI chr17:70,084,920...70,089,865
Ensembl chr17:75,638,634...75,641,666 		JBrowse link
G IFT57 intraflagellar transport 57 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17027958) Ensembl
MGI		 PMID:17027958 GO_REF:0000107 NCBI chr 3:105,287,086...105,348,872
Ensembl chr 3:112,222,128...112,282,069 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32203821), (PMID:32966817) Ensembl
MGI		 PMID:32203821 PMID:32966817 GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G MOSMO modulator of smoothened acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:34486668) MGI
Ensembl		 PMID:34486668 GO_REF:0000107 NCBI chr16:16,645,508...16,725,434
Ensembl chr16:22,319,108...22,395,805 		JBrowse link
G NME7 NME/NM23 family member 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:20080492) MGI
Ensembl		 PMID:20080492 GO_REF:0000107 NCBI chr 1:144,620,719...144,850,230
Ensembl chr 1:148,343,026...148,572,499 		JBrowse link
G PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:20080492) MGI PMID:20080492 NCBI chr 7:48,451,329...48,596,991
Ensembl chr 7:48,545,432...48,701,736 		JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16801545) Ensembl
MGI		 PMID:16801545 GO_REF:0000107 NCBI chr20:46,321,075...46,328,865
Ensembl chr20:47,384,818...47,390,733 		JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819 		JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19805295)
(PMID:19686689)		 Ensembl
MGI		 PMID:19686689 PMID:19805295 GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G WNT2 Wnt family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19686689) Ensembl
MGI		 PMID:19686689 GO_REF:0000107 NCBI chr 7:109,244,772...109,291,472
Ensembl chr 7:121,936,031...121,985,862 		JBrowse link
G WNT2B Wnt family member 2B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19686689) Ensembl
MGI		 PMID:19686689 GO_REF:0000107 NCBI chr 1:115,119,360...115,177,942
Ensembl chr 1:125,173,906...125,230,675 		JBrowse link
lung proximal/distal axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15531758) Ensembl
MGI		 PMID:15531758 GO_REF:0000107 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16720875) Ensembl
MGI		 PMID:16720875 GO_REF:0000107 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16720875) Ensembl
MGI		 PMID:16720875 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (PMID:16720875) MGI PMID:16720875 NCBI chr2B:109,441,938...109,541,449
Ensembl chr2B:228,022,453...228,121,874 		JBrowse link
metanephric capsule specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXD1 forkhead box D1 involved_in ISO (PMID:15634693) UniProt PMID:15634693 NCBI chr 5:41,867,118...41,870,497 JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EN1 engrailed homeobox 1 acts_upstream_of_or_within ISO (PMID:15607945) MGI PMID:15607945 NCBI chr2B:5,798,557...5,804,368 JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17601531) Ensembl
MGI		 PMID:17601531 GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chr2B:123,392,499...123,399,549 JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:11029008), (PMID:19795512) MGI PMID:11029008 PMID:19795512 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:2205396) Ensembl
MGI		 PMID:2205396 GO_REF:0000107 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583 		JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SSBP3 single stranded DNA binding protein 3 involved_in ISO (PMID:15857913) UniProt PMID:15857913 NCBI chr 1:53,501,656...53,680,682
Ensembl chr 1:55,094,820...55,272,207 		JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8555108) Ensembl
MGI		 PMID:8555108 GO_REF:0000107 NCBI chr12:39,767,839...39,772,460
Ensembl chr12:40,648,413...40,652,583 		JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GBX2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:16651541) MGI PMID:16651541 NCBI chr2B:123,392,499...123,399,549 JBrowse link
G