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ONTOLOGY REPORT - ANNOTATIONS


Term:blastoderm segmentation
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Accession:GO:0007350 term browser browse the term
Definition:The hierarchical steps resulting in the progressive subdivision of the anterior/posterior axis of the embryo.



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anterior/posterior axis specification, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3580390 (MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:3580203 NCBI chr 7:52,711,255...52,792,758
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO
IEA
(PMID:9054360)
GO_REF:0000107
RGD
Ensembl
PMID:9054360 GO_REF:0000107 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Tasor transcription activation suppressor involved_in ISO (MGI:6109647|PMID:28839193) RGD PMID:28839193 MGI:6109647 NCBI chr16:2,606,807...2,669,902
Ensembl chr16:2,603,936...2,667,292
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:9207801)
UniProt
RGD
PMID:9207801 GO_REF:0000024 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 acts_upstream_of_or_within ISO MGI:1934206 (MGI:1303194|PMID:9790191) RGD PMID:9790191 MGI:1303194 NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308
JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:4835157|PMID:9054360) RGD PMID:9054360 MGI:4835157 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
P granule organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 involved_in ISO (MGI:4943609|PMID:21397848) RGD PMID:21397848 MGI:4943609 NCBI chr10:44,577,740...44,581,686
Ensembl chr10:44,577,675...44,581,077
JBrowse link
G Tdrd1 tudor domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,871,939...255,919,222
Ensembl chr 1:255,875,887...255,915,871
JBrowse link
G Tdrd15 tudor domain containing 15 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:30,741,956...30,818,500
Ensembl chr 6:30,741,086...30,767,049
JBrowse link
G Tdrd5 tudor domain containing 5 involved_in IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(MGI:4946318|PMID:21383078)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21383078 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:4946318, RGD:13792537 NCBI chr13:68,394,180...68,447,745
Ensembl chr13:68,394,061...68,441,319
JBrowse link
G Tdrd6 tudor domain containing 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:17,344,033...17,359,348
Ensembl chr 9:17,344,026...17,359,344
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tdrkh tudor and KH domain containing involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:182,049,175...182,071,516
Ensembl chr 2:182,049,215...182,070,755
JBrowse link
specification of segmental identity, mandibular segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Chrd chordin involved_in ISO MGI:104327 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Ednra endothelin receptor type A involved_in ISO MGI:3773699 (MGI:5688194|PMID:19017795) RGD PMID:19017795 MGI:5688194 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Nog noggin involved_in ISO MGI:1313268 (MGI:2156257|PMID:11784076) RGD PMID:11784076 MGI:2156257 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
specification of segmental identity, maxillary segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednra endothelin receptor type A involved_in ISO MGI:3773699 (MGI:5688194|PMID:19017795) RGD PMID:19017795 MGI:5688194 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Six1 SIX homeobox 1 involved_in ISO MGI:3612276 (MGI:5903136|PMID:28455376) RGD PMID:28455376 MGI:5903136 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 involved_in ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,362,821...8,364,571
JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,431,635...8,436,592
JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(MGI:62488|PMID:8395349)
UniProt
RGD
PMID:8395349 GO_REF:0000024 MGI:62488 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lama5 laminin subunit alpha 5 acts_upstream_of_or_within ISO MGI:1934917 (MGI:3611396|PMID:16316641) RGD PMID:16316641 MGI:3611396 NCBI chr 3:167,270,296...167,318,370
Ensembl chr 3:167,270,296...167,318,451
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within ISO MGI:2137037 (MGI:3613099|PMID:16319111) RGD PMID:16319111 MGI:3613099 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Sema3f semaphorin 3F acts_upstream_of_or_within ISO MGI:2670663 (MGI:3613099|PMID:16319111) RGD PMID:16319111 MGI:3613099 NCBI chr 8:108,357,629...108,387,083
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of
involved_in
ISO
IEA
(MGI:3053236|PMID:15337776)
GO_REF:0000107
RGD
Ensembl
PMID:15337776 GO_REF:0000107 MGI:3053236 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 9:64,122,815...64,238,007
Ensembl chr 9:64,123,132...64,237,958
JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 4:21,282,398...21,754,834
Ensembl chr 4:21,287,982...21,494,432
JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:3848580 NCBI chr 8:108,357,629...108,387,083
Ensembl chr 8:108,357,629...108,387,083
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 acts_upstream_of_or_within ISO MGI:2181754|MGI:97359 (MGI:1858546|PMID:10809672) RGD PMID:10809672 MGI:1858546 NCBI chr 1:119,428,978...119,627,626
Ensembl chr 1:119,429,265...119,627,596
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20091
    multicellular organismal process 8961
      pattern specification process 505
        embryonic pattern specification 86
          blastoderm segmentation 30
            head segmentation + 5
            periodic partitioning + 0
            tripartite regional subdivision + 19
            trunk segmentation + 6
Path 2
Term Annotations click to browse term
  biological_process 20091
    developmental process 7027
      anatomical structure development 6464
        multicellular organism development 5238
          pattern specification process 505
            regionalization 395
              segmentation 119
                blastoderm segmentation 30
                  head segmentation + 5
                  periodic partitioning + 0
                  tripartite regional subdivision + 19
                  trunk segmentation + 6
paths to the root