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ONTOLOGY REPORT - ANNOTATIONS

Term:spermatid nucleus differentiation
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Accession:GO:0007289 term browser browse the term
Definition:The specialization of the spermatid nucleus during the development of a spermatid into a mature male gamete competent for fertilization.
Comment:See also the Cell Ontology term 'spermatid ; CL:0000018'.
Synonyms:exact_synonym: spermatid nuclear differentiation


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spermatid nucleus differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:16765935) MGI
GO_Central		 PMID:16765935 GO_REF:0000033 NCBI chr 1:82,816,738...82,878,722
Ensembl chr 1:82,817,204...82,878,903 		JBrowse link
G Gopc golgi associated PDZ and coiled-coil motif containing acts_upstream_of_or_within IMP (PMID:16765935) MGI PMID:16765935 NCBI chr10:52,213,120...52,258,220
Ensembl chr10:52,211,946...52,258,220 		JBrowse link
G Hmgb2 high mobility group box 2 acts_upstream_of_or_within IMP (PMID:16765935) MGI PMID:16765935 NCBI chr 8:57,964,877...57,969,033
Ensembl chr 8:57,964,941...57,969,033 		JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within IMP (PMID:27107036) MGI PMID:27107036 NCBI chr 3:116,424,813...116,456,264
Ensembl chr 3:116,424,813...116,456,326 		JBrowse link
G Nectin2 nectin cell adhesion molecule 2 acts_upstream_of_or_within IMP (PMID:10733589) MGI PMID:10733589 NCBI chr 7:19,450,569...19,483,498
Ensembl chr 7:19,450,569...19,484,408 		JBrowse link
G Pygo1 pygopus 1 involved_in
acts_upstream_of_or_within		 IBA
IGI		 (PMID:23637336) GO_Central
MGI		 PMID:23637336 GO_REF:0000033 NCBI chr 9:72,832,927...72,859,868
Ensembl chr 9:72,832,927...72,859,463 		JBrowse link
G Pygo2 pygopus 2 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:23637336) MGI
GO_Central		 PMID:23637336 GO_REF:0000033 NCBI chr 3:89,337,521...89,342,438
Ensembl chr 3:89,337,521...89,342,435 		JBrowse link
G Tbpl1 TATA box binding protein-like 1 acts_upstream_of_or_within IMP (PMID:16765935) MGI PMID:16765935 NCBI chr10:22,579,776...22,607,882
Ensembl chr10:22,579,778...22,607,837 		JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within IMP (PMID:20691678) MGI PMID:20691678 NCBI chr 6:97,128,911...97,156,107
Ensembl chr 6:97,129,958...97,156,083 		JBrowse link
G Tsga8 testis specific gene A8 acts_upstream_of_or_within IMP (PMID:33766931) MGI PMID:33766931 NCBI chr  X:82,530,280...82,531,530
Ensembl chr  X:82,530,284...82,531,530 		JBrowse link
sperm DNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brdt bromodomain, testis-specific involved_in IMP (MGI:5447877|PMID:22922464) UniProt PMID:22922464 MGI:5447877 NCBI chr 5:107,478,982...107,534,927
Ensembl chr 5:107,479,025...107,534,924 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in IMP (MGI:5559810|PMID:24252660) UniProt PMID:24252660 MGI:5559810 NCBI chr 4:152,423,103...152,474,651
Ensembl chr 4:152,423,108...152,474,651 		JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:6,435,951...6,516,108
Ensembl chr18:6,435,951...6,516,108 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within IMP (PMID:10775161), (PMID:14680821) MGI PMID:10775161 PMID:14680821 NCBI chr17:89,292,380...89,508,103
Ensembl chr17:89,292,380...89,508,103 		JBrowse link
G H1f7 H1.7 linker histone involved_in IMP (MGI:3531623|PMID:15710904) UniProt PMID:15710904 MGI:3531623 NCBI chr15:98,153,863...98,155,188
Ensembl chr15:98,153,867...98,155,174 		JBrowse link
G H2al2a H2A histone family member L2A involved_in IDA (MGI:5897488|PMID:28366643) UniProt PMID:28366643 MGI:5897488 NCBI chr 2:18,001,228...18,001,769
Ensembl chr 2:18,001,228...18,001,769 		JBrowse link
G H2bc1 H2B clustered histone 1 involved_in IMP (MGI:5502464|PMID:23884607) UniProt PMID:23884607 MGI:5502464 NCBI chr13:24,117,708...24,118,139
Ensembl chr13:24,117,756...24,118,139 		JBrowse link
G Kat5 K(lysine) acetyltransferase 5 involved_in IMP (MGI:5913510|PMID:28694333) GO_Central PMID:28694333 MGI:5913510 NCBI chr19:5,653,042...5,661,584
Ensembl chr19:5,653,042...5,660,265 		JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in IMP (MGI:5905675|PMID:28552346) UniProt PMID:28552346 MGI:5905675 NCBI chr 5:128,813,135...128,832,538
Ensembl chr 5:128,779,588...128,832,538 		JBrowse link
G Prm1 protamine 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr16:10,614,196...10,614,687
Ensembl chr16:10,614,190...10,623,703 		JBrowse link
G Psme4 proteasome (prosome, macropain) activator subunit 4 involved_in IMP (MGI:5494329|PMID:23706739) UniProt PMID:23706739 MGI:5494329 NCBI chr11:30,721,753...30,831,150
Ensembl chr11:30,721,726...30,830,361 		JBrowse link
G Rnf8 ring finger protein 8 involved_in IMP (MGI:4441228|PMID:20153262), (MGI:5905675|PMID:28552346) UniProt PMID:20153262 PMID:28552346 MGI:4441228 MGI:5905675 NCBI chr17:29,833,763...29,860,638
Ensembl chr17:29,833,764...29,863,965 		JBrowse link
G Selenof selenoprotein F involved_in ISO RGD
MGI		 PMID:11344099 GO_REF:0000096 MGI:4417868 RGD:728803 NCBI chr 3:144,276,188...144,303,438
Ensembl chr 3:144,276,065...144,303,441 		JBrowse link
G Sycp1 synaptonemal complex protein 1 acts_upstream_of_or_within IGI (PMID:22164254) MGI PMID:22164254 NCBI chr 3:102,725,815...102,843,416
Ensembl chr 3:102,725,815...102,843,416 		JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within		 ISO
IGI		 (PMID:22164254) MGI PMID:22164254 GO_REF:0000119 MGI:4834177 NCBI chr10:88,295,449...88,309,098
Ensembl chr10:88,295,431...88,309,098 		JBrowse link
G Tnp1 transition protein 1 involved_in IMP (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643) UniProt PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr 1:73,054,233...73,055,058
Ensembl chr 1:73,054,233...73,055,068 		JBrowse link
G Tnp2 transition protein 2 involved_in IMP (MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643) UniProt PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr16:10,605,799...10,606,519
Ensembl chr16:10,605,800...10,606,524 		JBrowse link
G Tssk6 testis-specific serine kinase 6 involved_in IMP (MGI:3580211|PMID:15870294) UniProt PMID:15870294 MGI:3580211 NCBI chr 8:70,354,834...70,356,168
Ensembl chr 8:70,354,834...70,356,168 		JBrowse link
spermatid nucleus elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap61 cilia and flagella associated protein 61 acts_upstream_of_or_within IMP (PMID:36659204) MGI PMID:36659204 NCBI chr 2:145,776,677...146,056,955
Ensembl chr 2:145,776,704...146,056,959 		JBrowse link
G Dmrtc2 doublesex and mab-3 related transcription factor like family C2 acts_upstream_of_or_within IMP (PMID:17098235) MGI PMID:17098235 NCBI chr 7:24,569,242...24,577,080
Ensembl chr 7:24,569,482...24,577,076 		JBrowse link
G H1f7 H1.7 linker histone involved_in IMP (MGI:3531623|PMID:15710904) UniProt PMID:15710904 MGI:3531623 NCBI chr15:98,153,863...98,155,188
Ensembl chr15:98,153,867...98,155,174 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within IMP (PMID:21337470) MGI PMID:21337470 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Kdm3a lysine (K)-specific demethylase 3A acts_upstream_of_or_within IMP (PMID:17943087) MGI PMID:17943087 NCBI chr 6:71,565,954...71,609,963
Ensembl chr 6:71,565,956...71,609,974 		JBrowse link
G Tnp1 transition protein 1 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:73,054,233...73,055,058
Ensembl chr 1:73,054,233...73,055,068 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    reproductive process 1994
      developmental process involved in reproduction 1367
        spermatid differentiation 330
          spermatid development 318
            spermatid nucleus differentiation 32
              negative regulation of spermatid nuclear differentiation 0
              positive regulation of spermatid nuclear differentiation 0
              regulation of spermatid nuclear differentiation + 0
              sperm DNA condensation 18
              spermatid nucleus elongation 6
Path 2
Term Annotations click to browse term
  biological_process 28573
    reproductive process 1994
      multicellular organismal reproductive process 1275
        gamete generation 1022
          male gamete generation 822
            spermatogenesis 800
              spermatid differentiation 330
                spermatid development 318
                  spermatid nucleus differentiation 32
                    negative regulation of spermatid nuclear differentiation 0
                    positive regulation of spermatid nuclear differentiation 0
                    regulation of spermatid nuclear differentiation + 0
                    sperm DNA condensation 18
                    spermatid nucleus elongation 6
paths to the root