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ONTOLOGY REPORT - ANNOTATIONS

Term:spermatid nucleus differentiation
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Accession:GO:0007289 term browser browse the term
Definition:The specialization of the spermatid nucleus during the development of a spermatid into a mature male gamete competent for fertilization.
Comment:See also the Cell Ontology term 'spermatid ; CL:0000018'.
Synonyms:exact_synonym: spermatid nuclear differentiation

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spermatid nucleus differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within ISO MGI:2182772 (MGI:3701727|PMID:16765935) RGD PMID:16765935 MGI:3701727 NCBI chr 9:88,607,508...88,663,486
Ensembl chr 9:88,607,508...88,662,224 		JBrowse link
G Gopc golgi associated PDZ and coiled-coil motif containing acts_upstream_of_or_within ISO MGI:2386794 (MGI:3701727|PMID:16765935) RGD PMID:16765935 MGI:3701727 NCBI chr20:33,471,355...33,521,281
Ensembl chr20:33,471,351...33,521,311 		JBrowse link
G Hmgb2 high mobility group box 2 acts_upstream_of_or_within ISO MGI:2387671 (MGI:3701727|PMID:16765935) RGD PMID:16765935 MGI:3701727 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191 		JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO MGI:5763015 (MGI:5763056|PMID:27107036) RGD PMID:27107036 MGI:5763056 NCBI chr 2:219,661,204...219,697,548
Ensembl chr 2:219,662,064...219,693,629 		JBrowse link
G Nectin2 nectin cell adhesion molecule 2 acts_upstream_of_or_within ISO MGI:2183405 (MGI:1354802|PMID:10733589) RGD PMID:10733589 MGI:1354802 NCBI chr 1:80,631,449...80,666,617
Ensembl chr 1:80,631,450...80,666,585 		JBrowse link
G Pygo1 pygopus family PHD finger 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:1916161 (MGI:5498404|PMID:23637336)		 RGD PMID:23637336, PMID:21873635 MGI:5498404, RGD:13792537 NCBI chr 8:79,607,013...79,625,188
Ensembl chr 8:79,606,789...79,627,166 		JBrowse link
G Pygo2 pygopus family PHD finger 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:1919385 (MGI:5498404|PMID:23637336)		 RGD PMID:23637336, PMID:21873635 MGI:5498404, RGD:13792537 NCBI chr 2:188,757,167...188,762,285
Ensembl chr 2:188,757,489...188,762,282 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2181639 (MGI:3701727|PMID:16765935) RGD PMID:16765935 MGI:3701727 NCBI chr 1:23,977,154...24,002,512
Ensembl chr 1:23,977,688...24,002,506 		JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within ISO MGI:4867389|MGI:4867392 (MGI:4849617|PMID:20691678) RGD PMID:20691678 MGI:4849617 NCBI chr 4:129,521,986...129,546,024
Ensembl chr 4:129,521,991...129,544,506 		JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:1855818|PMID:10775161) RGD PMID:10775161 MGI:1855818 NCBI chr 6:12,796,383...12,997,817
Ensembl chr 6:12,796,383...12,997,817 		JBrowse link
G H1f7 H1.7 linker histone involved_in ISS
ISO		 GO_REF:0000024
(MGI:3531623|PMID:15710904)		 UniProt
RGD		 PMID:15710904 GO_REF:0000024 MGI:3531623 NCBI chr 7:139,871,491...139,872,858
Ensembl chr 7:139,871,479...139,872,900 		JBrowse link
G Selenof selenoprotein F IMP RGD PMID:11344099 RGD:728803 NCBI chr 2:250,600,823...250,633,903
Ensembl chr 2:250,600,823...250,633,897 		JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:109542 (MGI:5315075|PMID:22164254)		 Ensembl
RGD		 PMID:22164254 GO_REF:0000107 MGI:5315075 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251 		JBrowse link
G Tssk6 testis-specific serine kinase 6 involved_in ISO (MGI:3580211|PMID:15870294) RGD PMID:15870294 MGI:3580211 NCBI chr16:21,272,282...21,274,756
Ensembl chr16:21,273,387...21,274,688 		JBrowse link
spermatid nucleus elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrtc2 DMRT-like family C2 acts_upstream_of_or_within ISO MGI:3697743 (MGI:3697293|PMID:17098235) RGD PMID:17098235 MGI:3697293 NCBI chr 1:81,734,256...81,741,419
Ensembl chr 1:81,736,335...81,741,345
Ensembl chr 9:81,736,335...81,741,345 		JBrowse link
G H1f7 H1.7 linker histone involved_in ISS
ISO		 GO_REF:0000024
(MGI:3531623|PMID:15710904)		 UniProt
RGD		 PMID:15710904 GO_REF:0000024 MGI:3531623 NCBI chr 7:139,871,491...139,872,858
Ensembl chr 7:139,871,479...139,872,900 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527 (MGI:4939808|PMID:21337470) RGD PMID:21337470 MGI:4939808 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924 		JBrowse link
G Kdm3a lysine demethylase 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3764891 (MGI:3763001|PMID:17943087)		 Ensembl
RGD		 PMID:17943087 GO_REF:0000107 MGI:3763001 NCBI chr 4:99,503,160...99,547,315
Ensembl chr 4:99,503,176...99,546,905 		JBrowse link
G Tnp1 transition protein 1 involved_in IBA
ISO
ISS		 PMID:21873635
(PMID:10781074)
GO_REF:0000024		 RGD
UniProt		 PMID:10781074, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446 		JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5559810|PMID:24252660)		 UniProt
RGD		 PMID:24252660 GO_REF:0000024 MGI:5559810 NCBI chr 5:169,519,212...169,572,059
Ensembl chr 5:169,519,212...169,567,107 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:2682484|PMID:14680821) RGD PMID:14680821 MGI:2682484 NCBI chr 6:12,796,383...12,997,817
Ensembl chr 6:12,796,383...12,997,817 		JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5502464|PMID:23884607)		 UniProt
RGD		 PMID:23884607 GO_REF:0000024 MGI:5502464 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580 		JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) RGD PMID:28552346 MGI:5905675 NCBI chr12:31,608,641...31,629,961
Ensembl chr12:31,609,053...31,629,881 		JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IBA
ISO		 PMID:21873635
(MGI:5494329|PMID:23706739)		 RGD PMID:23706739, PMID:21873635 MGI:5494329, RGD:13792537 NCBI chr14:115,166,165...115,269,041
Ensembl chr14:115,166,416...115,269,056 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5905675|PMID:28552346)		 UniProt
RGD		 PMID:28552346 GO_REF:0000024 MGI:5905675 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908 		JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in ISO (PMID:14643120) RGD PMID:14643120 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251 		JBrowse link
G Tnp1 transition protein 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)		 UniProt
RGD		 PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446 		JBrowse link
G Tnp2 transition protein 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 GO_REF:0000107 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr10:4,953,898...4,954,626
Ensembl chr10:4,953,879...4,954,624 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    cellular process 18481
      cellular process involved in reproduction in multicellular organism 464
        spermatid nucleus differentiation 25
          negative regulation of spermatid nuclear differentiation 0
          positive regulation of spermatid nuclear differentiation 0
          regulation of spermatid nuclear differentiation + 0
          sperm chromatin condensation + 13
          spermatid nucleus elongation 5
Path 2
Term Annotations click to browse term
  biological_process 19634
    reproduction 1798
      reproductive process 1795
        multi-organism reproductive process 1251
          sexual reproduction 997
            gamete generation 821
              male gamete generation 630
                spermatogenesis 609
                  spermatid differentiation 208
                    spermatid development 200
                      spermatid nucleus differentiation 25
                        negative regulation of spermatid nuclear differentiation 0
                        positive regulation of spermatid nuclear differentiation 0
                        regulation of spermatid nuclear differentiation + 0
                        sperm chromatin condensation + 13
                        spermatid nucleus elongation 5
paths to the root