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ONTOLOGY REPORT - ANNOTATIONS

Term:spermatid nucleus differentiation
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Accession:GO:0007289 term browser browse the term
Definition:The specialization of the spermatid nucleus during the development of a spermatid into a mature male gamete competent for fertilization.
Comment:See also the Cell Ontology term 'spermatid ; CL:0000018'.
Synonyms:exact_synonym: spermatid nuclear differentiation


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spermatid nucleus differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agfg1 ArfGAP with FG repeats 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2182772 (MGI:3701727|PMID:16765935)
PMID:21873635		 RGD PMID:16765935 PMID:21873635 MGI:3701727, RGD:13792537 NCBI chr 9:84,124,878...84,178,149
Ensembl chr 9:84,125,120...84,178,128 		JBrowse link
G Gopc golgi associated PDZ and coiled-coil motif containing acts_upstream_of_or_within ISO MGI:2386794 (MGI:3701727|PMID:16765935) RGD PMID:16765935 MGI:3701727 NCBI chr20:31,727,617...31,776,928
Ensembl chr20:31,727,620...31,776,903 		JBrowse link
G Hmgb2 high mobility group box 2 acts_upstream_of_or_within ISO MGI:2387671 (MGI:3701727|PMID:16765935) RGD PMID:16765935 MGI:3701727 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140 		JBrowse link
G Mfsd14a major facilitator superfamily domain containing 14A acts_upstream_of_or_within ISO MGI:5763015 (MGI:5763056|PMID:27107036) RGD PMID:27107036 MGI:5763056 NCBI chr 2:204,579,174...204,611,600
Ensembl chr 2:204,579,174...204,659,319 		JBrowse link
G Nectin2 nectin cell adhesion molecule 2 acts_upstream_of_or_within ISO MGI:2183405 (MGI:1354802|PMID:10733589) RGD PMID:10733589 MGI:1354802 NCBI chr 1:79,372,123...79,407,379
Ensembl chr 1:79,372,119...79,407,360 		JBrowse link
G Pygo1 pygopus family PHD finger 1 acts_upstream_of_or_within ISO MGI:1916161 (MGI:5498404|PMID:23637336) RGD PMID:23637336 MGI:5498404 NCBI chr 8:73,666,467...73,684,641
Ensembl chr 8:73,665,593...73,684,869 		JBrowse link
G Pygo2 pygopus family PHD finger 2 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:1919385 (MGI:5498404|PMID:23637336)		 RGD PMID:23637336 PMID:21873635 MGI:5498404, RGD:13792537 NCBI chr 2:174,849,670...174,854,758
Ensembl chr 2:174,849,936...174,854,758 		JBrowse link
G Tbpl1 TATA-box binding protein like 1 acts_upstream_of_or_within ISO MGI:2181639 (MGI:3701727|PMID:16765935) RGD PMID:16765935 MGI:3701727 NCBI chr 1:22,777,892...22,803,305
Ensembl chr 1:22,778,459...22,803,122
Ensembl chr 1:22,778,459...22,803,122 		JBrowse link
G Tmf1 TATA element modulatory factor 1 acts_upstream_of_or_within ISO MGI:4867389|MGI:4867392 (MGI:4849617|PMID:20691678) RGD PMID:20691678 MGI:4849617 NCBI chr 4:129,759,952...129,785,705
Ensembl chr 4:129,763,114...129,785,629 		JBrowse link
sperm DNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:1855818|PMID:10775161) RGD PMID:10775161 MGI:1855818 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785 		JBrowse link
G H1f7 H1.7 linker histone involved_in ISS
ISO		 GO_REF:0000024
(MGI:3531623|PMID:15710904)		 HGNC
RGD		 PMID:15710904 GO_REF:0000024 MGI:3531623 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930 		JBrowse link
G Prm1 protamine 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:4,871,909...4,872,155 JBrowse link
G Selenof selenoprotein F IMP RGD PMID:11344099 RGD:728803 NCBI chr 2:233,642,075...233,674,853
Ensembl chr 2:233,641,932...233,674,846 		JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:109542 (MGI:5315075|PMID:22164254)		 Ensembl
RGD		 PMID:22164254 GO_REF:0000107 MGI:5315075 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tssk6 testis-specific serine kinase 6 involved_in ISO (MGI:3580211|PMID:15870294) RGD PMID:15870294 MGI:3580211 NCBI chr16:19,523,626...19,526,074
Ensembl chr16:19,517,334...19,526,090 		JBrowse link
spermatid nucleus elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmrtc2 DMRT-like family C2 acts_upstream_of_or_within ISO MGI:3697743 (MGI:3697293|PMID:17098235) RGD PMID:17098235 MGI:3697293 NCBI chr 1:80,466,259...80,473,883
Ensembl chr 1:80,466,132...80,473,531 		JBrowse link
G H1f7 H1.7 linker histone involved_in ISS
ISO		 GO_REF:0000024
(MGI:3531623|PMID:15710904)		 HGNC
RGD		 PMID:15710904 GO_REF:0000024 MGI:3531623 NCBI chr 7:129,408,521...129,409,888
Ensembl chr 7:129,408,359...129,409,930 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527 (MGI:4939808|PMID:21337470) RGD PMID:21337470 MGI:4939808 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Kdm3a lysine demethylase 3A involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:3764891 (MGI:3763001|PMID:17943087)		 Ensembl
RGD		 PMID:17943087 GO_REF:0000107 MGI:3763001 NCBI chr 4:103,630,907...103,675,073
Ensembl chr 4:103,630,908...103,675,073 		JBrowse link
G Tnp1 transition protein 1 involved_in IBA
ISO
ISS		 PMID:21873635
(PMID:10781074)
GO_REF:0000024		 RGD
UniProt		 PMID:10781074 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274 		JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brdt bromodomain testis associated involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:5447877|PMID:22922464)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:22922464 GO_REF:0000024 GO_REF:0000107 MGI:5447877 NCBI chr14:2,421,094...2,445,842
Ensembl chr14:2,387,796...2,445,842 		JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5559810|PMID:24252660)		 UniProt
RGD		 PMID:24252660 GO_REF:0000024 MGI:5559810 NCBI chr 5:162,848,273...162,898,997
Ensembl chr 5:162,848,394...162,896,291 		JBrowse link
G Fshr follicle stimulating hormone receptor acts_upstream_of_or_within ISO MGI:2384087 (MGI:2682484|PMID:14680821) RGD PMID:14680821 MGI:2682484 NCBI chr 6:5,198,825...5,406,785
Ensembl chr 6:5,198,825...5,406,785 		JBrowse link
G H2bc1 H2B clustered histone 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5502464|PMID:23884607)		 UniProt
RGD		 PMID:23884607 GO_REF:0000024 MGI:5502464 NCBI chr17:41,172,041...41,172,510 JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (MGI:5905675|PMID:28552346) RGD PMID:28552346 MGI:5905675 NCBI chr12:27,949,743...27,970,645
Ensembl chr12:27,949,744...27,970,580 		JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IBA
ISO		 PMID:21873635
(MGI:5494329|PMID:23706739)		 RGD PMID:23706739 PMID:21873635 MGI:5494329, RGD:13792537 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5905675|PMID:28552346)		 UniProt
RGD		 PMID:28552346 GO_REF:0000024 MGI:5905675 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491 		JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in ISO (PMID:14643120) RGD PMID:14643120 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Tnp1 transition protein 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)		 UniProt
RGD		 PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr 9:74,594,463...74,595,072
Ensembl chr 9:74,594,466...74,595,274 		JBrowse link
G Tnp2 transition protein 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:3041389|PMID:15083521), (MGI:3056208|PMID:15189834), (MGI:3620321|PMID:15163613), (MGI:5897488|PMID:28366643)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15083521 PMID:15163613 PMID:15189834 PMID:28366643 GO_REF:0000024 GO_REF:0000107 MGI:3041389 MGI:3056208 MGI:3620321 MGI:5897488 NCBI chr10:4,879,812...4,880,540
Ensembl chr10:4,879,812...4,880,538 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular process involved in reproduction in multicellular organism 512
        spermatid nucleus differentiation 27
          negative regulation of spermatid nuclear differentiation 0
          positive regulation of spermatid nuclear differentiation 0
          regulation of spermatid nuclear differentiation + 0
          sperm DNA condensation + 15
          spermatid nucleus elongation 5
Path 2
Term Annotations click to browse term
  biological_process 18737
    reproduction 1835
      reproductive process 1826
        multicellular organismal reproductive process 1067
          gamete generation 853
            male gamete generation 670
              spermatogenesis 649
                spermatid differentiation 242
                  spermatid development 233
                    spermatid nucleus differentiation 27
                      negative regulation of spermatid nuclear differentiation 0
                      positive regulation of spermatid nuclear differentiation 0
                      regulation of spermatid nuclear differentiation + 0
                      sperm DNA condensation + 15
                      spermatid nucleus elongation 5
paths to the root