Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:sperm axoneme assembly
go back to main search page
Accession:GO:0007288 term browser browse the term
Definition:The assembly and organization of the sperm flagellar axoneme, the bundle of microtubules and associated proteins that forms the core of the eukaryotic sperm flagellum, and is responsible for movement.


show annotations for term's descendants           Sort by:
sperm axoneme assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Armc2 armadillo repeat containing 2 involved_in ISO
IBA		 (PMID:30686508)
(MGI:6368074|PMID:30686508)
GO_REF:0000033		 RGD
GO_Central		 PMID:30686508 GO_REF:0000033 MGI:6368074 NCBI chr20:45,395,859...45,501,808
Ensembl chr20:45,394,127...45,504,819 		JBrowse link
G Bbof1 basal body orientation factor 1 involved_in ISO (MGI:7565919|PMID:37198331) RGD PMID:37198331 MGI:7565919 NCBI chr 6:104,055,246...104,081,036
Ensembl chr 6:104,055,241...104,082,071 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within ISO MGI:3521669 (PMID:15539463) RGD PMID:15539463 NCBI chr19:10,909,653...10,944,998
Ensembl chr19:10,909,619...10,944,993 		JBrowse link
G Ccdc146 coiled-coil domain containing 146 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:7576814|PMID:38038747)		 Ensembl
UniProt
RGD		 PMID:38038747 GO_REF:0000024 GO_REF:0000107 MGI:7576814 NCBI chr 4:13,662,766...13,811,619
Ensembl chr 4:13,662,766...13,811,608 		JBrowse link
G Cep131 centrosomal protein 131 acts_upstream_of_or_within ISO MGI:3870375 (PMID:24415959) RGD PMID:24415959 NCBI chr10:105,346,015...105,370,380
Ensembl chr10:105,346,015...105,370,380 		JBrowse link
G Cfap157 cilia and flagella associated protein 157 involved_in ISS
ISO
IBA		 GO_REF:0000024
(MGI:5812811|PMID:27965440)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:27965440 GO_REF:0000024 GO_REF:0000033 MGI:5812811 NCBI chr 3:16,066,521...16,073,504
Ensembl chr 3:16,066,521...16,073,495 		JBrowse link
G Cfap206 cilia and flagella associated protein 206 involved_in ISO
ISS
IEA
IBA		 (MGI:6452763|PMID:32376681)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033		 RGD
UniProt
Ensembl
GO_Central		 PMID:32376681 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:6452763 NCBI chr 5:49,254,399...49,299,145
Ensembl chr 5:49,254,408...49,299,090 		JBrowse link
G Cfap43 cilia and flagella associated protein 43 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:29449551)
(MGI:6119337|PMID:29449551), (MGI:6140851|PMID:28552195)
GO_REF:0000033
MGI:6140013|MGI:6431400 (PMID:29522859), (PMID:31884020)		 RGD
GO_Central		 PMID:28552195 PMID:29449551 PMID:29522859 PMID:31884020 GO_REF:0000033 MGI:6119337 MGI:6140851 NCBI chr 1:246,625,259...246,712,438
Ensembl chr 1:246,625,262...246,712,443 		JBrowse link
G Cfap44 cilia and flagella associated protein 44 involved_in
acts_upstream_of_or_within		 ISO (PMID:29449551)
(MGI:6119337|PMID:29449551), (MGI:6140851|PMID:28552195)
MGI:6140014 (PMID:29522859)		 RGD PMID:28552195 PMID:29449551 PMID:29522859 MGI:6119337 MGI:6140851 NCBI chr11:56,199,772...56,283,964
Ensembl chr11:56,201,049...56,283,986 		JBrowse link
G Cfap47 cilia and flagella associated protein 47 involved_in ISO (PMID:33472045)
(MGI:6716514|PMID:33472045)		 RGD PMID:33472045 MGI:6716514 NCBI chr  X:43,264,687...43,616,607
Ensembl chr  X:43,263,490...43,616,852 		JBrowse link
G Cfap58 cilia and flagella associated protein 58 involved_in
acts_upstream_of_or_within		 ISO (PMID:32791035)
MGI:6477396 (PMID:32791035)		 RGD PMID:32791035 NCBI chr 1:246,802,691...246,911,363
Ensembl chr 1:246,802,665...246,911,374 		JBrowse link
G Cfap65 cilia and flagella associated protein 65 involved_in ISO
IBA		 (MGI:6393461|PMID:31571197)
GO_REF:0000033		 RGD
GO_Central		 PMID:31571197 GO_REF:0000033 MGI:6393461 NCBI chr 9:76,459,211...76,494,199
Ensembl chr 9:76,459,211...76,494,128 		JBrowse link
G Cfap69 cilia and flagella associated protein 69 acts_upstream_of_or_within ISO (PMID:30415212)
MGI:6431857 (PMID:30415212)		 RGD PMID:30415212 NCBI chr 4:28,379,604...28,452,562
Ensembl chr 4:28,375,996...28,450,698 		JBrowse link
G Cfap97d1 CFAP97 domain containing 1 involved_in ISO
IBA		 (MGI:6452255|PMID:32785227)
GO_REF:0000033		 RGD
GO_Central		 PMID:32785227 GO_REF:0000033 MGI:6452255 NCBI chr10:86,933,585...86,944,566
Ensembl chr10:86,933,808...86,938,244 		JBrowse link
G Dnah1 dynein, axonemal, heavy chain 1 involved_in ISO
ISS		 (PMID:24360805)
GO_REF:0000024		 RGD
UniProt		 PMID:24360805 GO_REF:0000024 NCBI chr16:6,455,514...6,517,103
Ensembl chr16:6,456,002...6,518,350 		JBrowse link
G Drc7 dynein regulatory complex subunit 7 involved_in ISO (MGI:6391458|PMID:31961863) RGD PMID:31961863 MGI:6391458 NCBI chr19:9,943,452...9,961,266
Ensembl chr19:9,943,456...9,961,163 		JBrowse link
G Fsip2 fibrous sheath-interacting protein 2 acts_upstream_of_or_within_positive_effect ISO (PMID:30137358), (PMID:30745215) RGD PMID:30137358 PMID:30745215 NCBI chr 3:67,962,345...68,032,866
Ensembl chr 3:67,962,360...68,032,868 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:2157527 (PMID:21337470) RGD PMID:21337470 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Iqcg IQ motif containing G involved_in ISS
ISO
IEA
IBA		 GO_REF:0000024
(MGI:5608638|PMID:24849454)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033		 UniProt
RGD
Ensembl
TreeGrafter
GO_Central		 PMID:24849454 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 MGI:5608638 NCBI chr11:67,730,117...67,771,170
Ensembl chr11:67,730,247...67,771,168 		JBrowse link
G Meig1 meiosis/spermiogenesis associated 1 acts_upstream_of_or_within ISO MGI:3843498|MGI:4367077 (PMID:23258628) RGD PMID:23258628 NCBI chr17:74,810,791...74,828,433
Ensembl chr17:74,814,632...74,828,433 		JBrowse link
G Mns1 meiosis-specific nuclear structural 1 involved_in ISO (MGI:5318625|PMID:22396656) RGD PMID:22396656 MGI:5318625 NCBI chr 8:73,148,877...73,169,570
Ensembl chr 8:73,148,877...73,176,925 		JBrowse link
G Neurl1 neuralized E3 ubiquitin protein ligase 1 acts_upstream_of_or_within ISO MGI:2153143 (PMID:11585928) RGD PMID:11585928 NCBI chr 1:246,066,830...246,152,890
Ensembl chr 1:246,067,100...246,152,903 		JBrowse link
G Pdcl2 phosducin-like 2 acts_upstream_of_or_within ISO MGI:7546801 (PMID:36278277) RGD PMID:36278277 NCBI chr14:31,874,563...31,895,265
Ensembl chr14:31,874,578...31,895,272 		JBrowse link
G Pla2g3 phospholipase A2, group III acts_upstream_of_or_within ISO MGI:4461174 (PMID:20424323) RGD PMID:20424323 NCBI chr14:78,367,625...78,373,913
Ensembl chr14:78,368,105...78,373,913 		JBrowse link
G Spag16 sperm associated antigen 16 acts_upstream_of_or_within ISO MGI:3606977 (PMID:15328412) RGD PMID:15328412 NCBI chr 9:71,333,005...72,252,772
Ensembl chr 9:71,332,992...72,252,708 		JBrowse link
G Spag6 sperm associated antigen 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:81,352,372...81,401,504
Ensembl chr17:81,349,084...81,401,501 		JBrowse link
G Spag6l sperm associated antigen 6-like involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2662475 (PMID:12391165)		 GO_Central
RGD		 PMID:12391165 GO_REF:0000033 NCBI chr11:84,173,628...84,269,374
Ensembl chr11:84,173,526...84,269,364 		JBrowse link
G Spef2 sperm flagellar 2 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA
IBA		 GO_REF:0000024
(PMID:31048344), (PMID:31151990)
GO_REF:0000107
GO_REF:0000118
GO_REF:0000033
MGI:5295267 (PMID:21715716)		 UniProt
RGD
Ensembl
TreeGrafter
GO_Central		 PMID:21715716 PMID:31048344 PMID:31151990 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:58,512,489...58,694,718
Ensembl chr 2:58,512,489...58,694,664 		JBrowse link
G Tbc1d21 TBC1 domain family, member 21 involved_in ISO (MGI:6490732|PMID:32976492) RGD PMID:32976492 MGI:6490732 NCBI chr 8:58,761,562...58,773,711
Ensembl chr 8:58,761,563...58,773,711 		JBrowse link
G Tpgs1 tubulin polyglutamylase complex subunit 1 acts_upstream_of_or_within ISO MGI:2388468 (PMID:12242242) RGD PMID:12242242 NCBI chr 7:10,029,842...10,035,764
Ensembl chr 7:10,029,854...10,035,764 		JBrowse link
G Ttc12 tetratricopeptide repeat domain 12 involved_in ISO
IBA		 (PMID:31978331)
GO_REF:0000033		 RGD
GO_Central		 PMID:31978331 GO_REF:0000033 NCBI chr 8:49,799,916...49,847,940
Ensembl chr 8:49,799,920...49,847,087 		JBrowse link
G Ttll1 TTL family tubulin polyglutamylase complex subunit L1 acts_upstream_of_or_within ISO MGI:4297933|MGI:4461777 (PMID:20442420), (PMID:20498047) RGD PMID:20442420 PMID:20498047 NCBI chr 7:114,619,509...114,648,850
Ensembl chr 7:114,619,508...114,648,761 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within ISO (PMID:23558686) RGD PMID:23558686 NCBI chr 6:105,483,091...105,700,920
Ensembl chr 6:105,483,191...105,700,934 		JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B acts_upstream_of_or_within ISO MGI:2183933 (PMID:12672659) RGD PMID:12672659 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665 		JBrowse link
G Zmynd12 zinc finger, MYND-type containing 12 involved_in IEA
ISO		 GO_REF:0000107
(PMID:37934199)		 Ensembl
RGD		 PMID:37934199 GO_REF:0000107 NCBI chr 5:133,026,917...133,059,985
Ensembl chr 5:133,027,009...133,059,995 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    reproductive process 1870
      developmental process involved in reproduction 1235
        sperm axoneme assembly 35
Path 2
Term Annotations click to browse term
  biological_process 20413
    cellular process 18812
      cellular component organization or biogenesis 7290
        cellular component organization 6980
          cell projection organization 1886
            plasma membrane bounded cell projection organization 1847
              cilium organization 478
                cilium assembly 443
                  motile cilium assembly 90
                    sperm flagellum assembly 58
                      sperm axoneme assembly 35
paths to the root