Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:establishment of tissue polarity
go back to main search page
Accession:GO:0007164 term browser browse the term
Definition:Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
Synonyms:never_in_taxon: NCBITaxon:4751 ! Fungi


show annotations for term's descendants           Sort by:
establishment of tissue polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf4a hepatic nuclear factor 4, alpha involved_in ISO RGD
MGI		 PMID:12749857 GO_REF:0000096 MGI:4417868 RGD:1625017 NCBI chr 2:163,348,731...163,414,827
Ensembl chr 2:163,348,728...163,414,830 		JBrowse link
establishment of body hair planar orientation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Astn2 astrotactin 2 acts_upstream_of_or_within IGI (PMID:26418459) MGI PMID:26418459 NCBI chr 4:65,299,040...66,322,774
Ensembl chr 4:65,299,040...66,322,848 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within IMP (PMID:19357712)
(PMID:18849982)		 MGI PMID:18849982 PMID:19357712 NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within IGI (PMID:26418459) MGI PMID:26418459 NCBI chr15:38,869,673...38,901,587
Ensembl chr15:38,869,429...38,901,583 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IMP (PMID:18849982) MGI PMID:18849982 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
establishment of planar polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alms1 ALMS1, centrosome and basal body associated acts_upstream_of_or_within IMP (PMID:21071598) MGI PMID:21071598 NCBI chr 6:85,564,482...85,698,973
Ensembl chr 6:85,564,513...85,679,735 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 involved_in IMP (MGI:2667273|PMID:12842012) UniProt PMID:12842012 MGI:2667273 NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404 		JBrowse link
G Cplane1 ciliogenesis and planar polarity effector 1 acts_upstream_of_or_within IMP (PMID:25877302) MGI PMID:25877302 NCBI chr15:8,198,509...8,300,642
Ensembl chr15:8,198,590...8,300,642 		JBrowse link
G Dchs1 dachsous cadherin related 1 acts_upstream_of_or_within IC (PMID:21303848) MGI PMID:21303848 NCBI chr 7:105,402,196...105,437,562
Ensembl chr 7:105,402,197...105,436,861 		JBrowse link
G Dlg3 discs large MAGUK scaffold protein 3 acts_upstream_of_or_within IMP (PMID:21920314) MGI PMID:21920314 NCBI chr  X:99,811,200...99,862,016
Ensembl chr  X:99,811,328...99,862,016 		JBrowse link
G Exoc5 exocyst complex component 5 acts_upstream_of_or_within
acts_upstream_of_or_within_positive_effect		 ISO
IMP		 (PMID:26040895) MGI
MGI		 PMID:26040895 NCBI chr14:49,249,379...49,304,124
Ensembl chr14:49,241,547...49,304,110 		JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within IC (PMID:21303848) MGI PMID:21303848 NCBI chr 3:38,939,867...39,066,134
Ensembl chr 3:38,941,089...39,066,134 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in IMP
NAS		 (MGI:4438317|PMID:19767740)
(MGI:5912570|PMID:27158779)		 UniProt
ComplexPortal		 PMID:19767740 PMID:27158779 MGI:4438317 MGI:5912570 NCBI chr 7:44,545,517...44,552,053
Ensembl chr 7:44,545,503...44,552,055 		JBrowse link
G Fzd3 frizzled class receptor 3 acts_upstream_of_or_within IGI (PMID:16495441) MGI PMID:16495441 NCBI chr14:65,429,890...65,499,912
Ensembl chr14:65,429,898...65,499,912 		JBrowse link
G Fzd6 frizzled class receptor 6 acts_upstream_of_or_within IGI (PMID:16495441) MGI PMID:16495441 NCBI chr15:38,869,673...38,901,587
Ensembl chr15:38,869,429...38,901,583 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within IGI (PMID:20643356) MGI PMID:20643356 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941 		JBrowse link
G Ift20 intraflagellar transport 20 acts_upstream_of_or_within IMP (PMID:25605782) MGI PMID:25605782 NCBI chr11:78,427,187...78,432,558
Ensembl chr11:78,427,187...78,432,563 		JBrowse link
G Intu inturned planar cell polarity protein involved_in NAS (MGI:5912570|PMID:27158779) ComplexPortal PMID:27158779 MGI:5912570 NCBI chr 3:40,585,559...40,659,206
Ensembl chr 3:40,585,435...40,659,204 		JBrowse link
G Ptk7 PTK7 protein tyrosine kinase 7 acts_upstream_of_or_within IMP (PMID:20704721) MGI PMID:20704721 NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within IMP (PMID:22927466) MGI PMID:22927466 NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
G Trp63 transformation related protein 63 acts_upstream_of_or_within IDA (PMID:14729569) MGI PMID:14729569 NCBI chr16:25,502,513...25,710,842
Ensembl chr16:25,502,513...25,710,852 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within IMP (PMID:25605782) MGI PMID:25605782 NCBI chr12:98,886,796...98,949,509
Ensembl chr12:98,886,833...98,949,497 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 involved_in
acts_upstream_of_or_within		 IMP
IGI
IBA		 (MGI:2657050|PMID:12724779), (MGI:3618551|PMID:15637299)
(PMID:20643356)		 UniProt
MGI
GO_Central		 PMID:12724779 PMID:15637299 PMID:20643356 GO_REF:0000033 MGI:2657050 MGI:3618551 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in NAS (MGI:5912570|PMID:27158779) ComplexPortal PMID:27158779 MGI:5912570 NCBI chr11:21,521,969...21,848,686
Ensembl chr11:21,522,235...21,848,989 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (PMID:18953410) MGI PMID:18953410 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
establishment of planar polarity involved in nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Erbb4 erb-b2 receptor tyrosine kinase 4 acts_upstream_of_or_within IMP (PMID:22076439) MGI PMID:22076439 NCBI chr 1:68,071,063...69,147,756
Ensembl chr 1:68,071,345...69,147,218 		JBrowse link
G Wnt9b wingless-type MMTV integration site family, member 9B acts_upstream_of_or_within IMP (PMID:19543268) MGI PMID:19543268 NCBI chr11:103,618,188...103,666,098
Ensembl chr11:103,618,190...103,640,647 		JBrowse link
establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 acts_upstream_of_or_within IGI (PMID:18606138) MGI PMID:18606138 NCBI chr15:38,940,327...38,950,516
Ensembl chr15:38,940,327...38,950,516 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IMP (PMID:18606138) MGI PMID:18606138 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
establishment of planar polarity of embryonic epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within IMP (PMID:12842012) MGI PMID:12842012 NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404 		JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within IGI
IMP		 (PMID:16439479) MGI PMID:16439479 NCBI chr13:31,809,686...31,815,390
Ensembl chr13:31,809,799...31,815,386 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 involved_in IMP (MGI:5477842|PMID:23533177) CACAO PMID:23533177 MGI:5477842 NCBI chr11:74,564,775...74,615,210
Ensembl chr11:74,564,775...74,615,496 		JBrowse link
establishment of planar polarity of follicular epithelium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr1 WD repeat domain 1 involved_in IMP (MGI:5787764|PMID:25915128) UniProt PMID:25915128 MGI:5787764 NCBI chr 5:38,684,149...38,720,265
Ensembl chr 5:38,684,156...38,720,564 		JBrowse link
microtubule cytoskeleton organization involved in establishment of planar polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brsk1 BR serine/threonine kinase 1 involved_in IGI (MGI:6148529|PMID:18268107) ARUK-UCL PMID:18268107 MGI:6148529 NCBI chr 7:4,693,635...4,718,996
Ensembl chr 7:4,693,603...4,718,996 		JBrowse link
G Brsk2 BR serine/threonine kinase 2 involved_in IGI (MGI:6148529|PMID:18268107) ARUK-UCL PMID:18268107 MGI:6148529 NCBI chr 7:141,503,488...141,557,981
Ensembl chr 7:141,503,488...141,557,984 		JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 involved_in IMP (MGI:5477842|PMID:23533177) CACAO PMID:23533177 MGI:5477842 NCBI chr11:74,564,775...74,615,210
Ensembl chr11:74,564,775...74,615,496 		JBrowse link
negative regulation of planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IGI (PMID:19056682) MGI PMID:19056682 NCBI chr 6:134,423,439...134,543,876
Ensembl chr 6:134,423,439...134,543,928 		JBrowse link
planar cell polarity pathway involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within IGI (PMID:20704721) MGI PMID:20704721 NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:16571627) MGI
GO_Central		 PMID:16571627 GO_REF:0000033 NCBI chr 4:155,931,829...155,943,760
Ensembl chr 4:155,931,859...155,943,760 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 acts_upstream_of_or_within
involved_in		 IGI
IBA
IMP		 (PMID:16571627) MGI
GO_Central		 PMID:16571627 GO_REF:0000033 NCBI chr11:69,891,418...69,900,935
Ensembl chr11:69,891,421...69,903,127 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 acts_upstream_of_or_within
involved_in		 IGI
IBA		 (PMID:19008950) MGI
GO_Central		 PMID:19008950 GO_REF:0000033 NCBI chr16:20,335,694...20,352,763
Ensembl chr16:20,335,732...20,352,760 		JBrowse link
G Fzd1 frizzled class receptor 1 acts_upstream_of_or_within IGI (PMID:20940229) MGI PMID:20940229 NCBI chr 5:4,803,839...4,808,216
Ensembl chr 5:4,803,839...4,808,035 		JBrowse link
G Fzd2 frizzled class receptor 2 acts_upstream_of_or_within IGI (PMID:20940229) MGI PMID:20940229 NCBI chr11:102,495,257...102,498,884
Ensembl chr11:102,495,222...102,498,884 		JBrowse link
G Grhl3 grainyhead like transcription factor 3 acts_upstream_of_or_within IGI (PMID:20643356) MGI PMID:20643356 NCBI chr 4:135,269,199...135,300,943
Ensembl chr 4:135,269,199...135,300,941 		JBrowse link
G Ptk7 PTK7 protein tyrosine kinase 7 acts_upstream_of_or_within IGI (PMID:20704721) MGI PMID:20704721 NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (PMID:18257070) MGI PMID:18257070 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (PMID:18257070) MGI PMID:18257070 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
G Sfrp5 secreted frizzled-related sequence protein 5 acts_upstream_of_or_within IGI (PMID:18257070) MGI PMID:18257070 NCBI chr19:42,186,410...42,190,691
Ensembl chr19:42,186,410...42,190,691 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IGI
IMP		 (PMID:20704721)
(PMID:20643356)
(PMID:20940229)
(PMID:16571627)
(PMID:18257070)
(PMID:19008950)		 MGI PMID:16571627 PMID:18257070 PMID:19008950 PMID:20643356 PMID:20704721 More... NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (PMID:19056682) MGI PMID:19056682 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
protein localization involved in establishment of planar polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 acts_upstream_of_or_within IDA (PMID:18849982) MGI PMID:18849982 NCBI chr15:85,782,959...85,918,424
Ensembl chr15:85,783,130...85,918,404 		JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:127,582,652...127,630,833
Ensembl chr 2:127,582,652...127,630,817 		JBrowse link
regulation of establishment of planar polarity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jhy junctional cadherin complex regulator acts_upstream_of_or_within IMP (PMID:29211732) MGI PMID:29211732 NCBI chr 9:40,806,147...40,877,560
Ensembl chr 9:40,806,145...40,875,414 		JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 involved_in IMP (MGI:5430302|PMID:19959710) UniProt PMID:19959710 MGI:5430302 NCBI chr 1:20,128,003...20,688,306
Ensembl chr 1:20,128,003...20,688,288 		JBrowse link
G Sapcd2 suppressor APC domain containing 2 involved_in IMP (MGI:5882149|PMID:26766442) UniProt PMID:26766442 MGI:5882149 NCBI chr 2:25,261,974...25,268,225
Ensembl chr 2:25,262,333...25,268,225 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (PMID:19300477) MGI PMID:19300477 NCBI chr 8:23,901,401...23,939,648
Ensembl chr 8:23,901,518...23,939,648 		JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (PMID:19300477) MGI PMID:19300477 NCBI chr 3:83,673,628...83,681,621
Ensembl chr 3:83,673,628...83,681,623 		JBrowse link
G Sfrp5 secreted frizzled-related sequence protein 5 acts_upstream_of_or_within IGI (PMID:19300477) MGI PMID:19300477 NCBI chr19:42,186,410...42,190,691
Ensembl chr19:42,186,410...42,190,691 		JBrowse link
G Spag6l sperm associated antigen 6-like acts_upstream_of_or_within IMP (PMID:25393619) MGI PMID:25393619 NCBI chr16:16,570,880...16,647,177
Ensembl chr16:16,570,880...16,647,320 		JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IGI (PMID:19300477) MGI PMID:19300477 NCBI chr 1:171,828,527...171,856,532
Ensembl chr 1:171,828,527...171,856,011 		JBrowse link
regulation of establishment of planar polarity involved in neural tube closure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within IMP (PMID:19966784) MGI PMID:19966784 NCBI chr 3:129,776,408...129,855,248
Ensembl chr 3:129,776,408...129,855,202 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure morphogenesis 3041
        establishment of tissue polarity 45
          establishment of planar polarity + 44
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7369
      anatomical structure development 6841
        anatomical structure morphogenesis 3041
          establishment of tissue polarity 45
            establishment of planar polarity + 44
paths to the root