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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptonemal complex assembly
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Accession:GO:0007130 term browser browse the term
Definition:The cell cycle process in which the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination.
Synonyms:exact_synonym: synaptonemal complex formation


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synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAG6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,300,126...31,313,829
Ensembl chr 6:32,190,037...32,204,321 		JBrowse link
G C15H14orf39 chromosome 15 C14orf39 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:41,040,315...41,090,267
Ensembl chr14:59,304,040...59,351,956 		JBrowse link
G C1H1orf146 chromosome 1 C1orf146 homolog involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:94,876,468...94,907,783
Ensembl chr 1:93,618,905...93,646,763 		JBrowse link
G CPEB1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO (PMID:12815066)
(PMID:11702780)		 MGI PMID:11702780 PMID:12815066 NCBI chr15:62,949,264...63,053,994
Ensembl chr15:80,443,096...80,526,948 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17599069) Ensembl
MGI		 PMID:17599069 GO_REF:0000107 NCBI chr 6:31,542,946...31,560,894
Ensembl chr 6:32,429,271...32,451,844 		JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in ISO (MGI:5009722|PMID:21478856) UniProt PMID:21478856 MGI:5009722 NCBI chr 1:126,054,585...126,077,361
Ensembl chr 1:129,704,451...129,726,691 		JBrowse link
G LOC100977537 argonaute RISC component 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22863743) Ensembl
MGI		 PMID:22863743 GO_REF:0000107 NCBI chr 1:35,072,045...35,122,418
Ensembl chr 1:36,249,038...36,299,259 		JBrowse link
G LOC129394329 pachytene checkpoint protein 2 homolog involved_in ISO (MGI:4821667|PMID:20711356) UniProt PMID:20711356 MGI:4821667
G MCMDC2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO (PMID:27760146) MGI PMID:27760146 NCBI chr 8:63,412,462...63,465,258 JBrowse link
G MEIOC meiosis specific with coiled-coil domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:12,725,114...12,744,974
Ensembl chr17:12,901,882...12,920,285 		JBrowse link
G MLH3 mutL homolog 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16260499) Ensembl
MGI		 PMID:16260499 GO_REF:0000107 NCBI chr14:55,568,033...55,603,672
Ensembl chr14:74,413,319...74,445,749 		JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24589552)
(PMID:22711701)		 Ensembl
MGI		 PMID:22711701 PMID:24589552 GO_REF:0000107 NCBI chr20:1,385,935...1,413,301
Ensembl chr20:1,153,384...1,231,383 		JBrowse link
G REC8 REC8 meiotic recombination protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22711701)
(PMID:24589552)		 Ensembl
MGI		 PMID:22711701 PMID:24589552 GO_REF:0000107 NCBI chr14:4,948,100...4,956,492
Ensembl chr14:23,071,724...23,079,948 		JBrowse link
G SHOC1 shortage in chiasmata 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:82,816,269...82,916,515
Ensembl chr 9:110,978,485...111,085,856 		JBrowse link
G SPO11 SPO11 initiator of meiotic double strand breaks involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27760146)
(PMID:24589552)		 Ensembl
MGI		 PMID:24589552 PMID:27760146 GO_REF:0000107 NCBI chr20:53,669,128...53,684,328
Ensembl chr20:54,948,661...54,963,384 		JBrowse link
G SYCE1 synaptonemal complex central element protein 1 involved_in IEA InterPro GO_REF:0000002 Ensembl chr10:134,866,705...134,878,566 JBrowse link
G SYCE1L synaptonemal complex central element protein 1 like involved_in IEA InterPro GO_REF:0000002 NCBI chr16:57,774,445...57,789,221
Ensembl chr16:77,120,694...77,135,476 		JBrowse link
G SYCE2 synaptonemal complex central element protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr19:12,459,646...12,481,833
Ensembl chr19:13,203,595...13,224,052 		JBrowse link
G SYCE3 synaptonemal complex central element protein 3 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr22:30,797,389...30,809,517
Ensembl chr22:49,908,095...49,913,903 		JBrowse link
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22164254) InterPro
MGI
Ensembl		 PMID:22164254 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:1352918|PMID:10678170)
(PMID:22164254)		 UniProt
MGI		 PMID:10678170 PMID:22164254 MGI:1352918 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
G SYDE1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (PMID:23791195) MGI PMID:23791195 NCBI chr19:14,640,493...14,648,080
Ensembl chr19:15,625,096...15,631,600 		JBrowse link
G TERB2 telomere repeat binding bouquet formation protein 2 acts_upstream_of_or_within ISO (PMID:30718482) MGI PMID:30718482 NCBI chr15:23,904,880...23,927,325 JBrowse link
G TEX11 testis expressed 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18316482) MGI
TreeGrafter		 PMID:18316482 GO_REF:0000118 NCBI chr  X:59,796,821...60,175,517
Ensembl chr  X:69,877,751...70,233,320 		JBrowse link
G TEX12 testis expressed 12 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22164254) MGI
TreeGrafter		 PMID:22164254 GO_REF:0000118 NCBI chr11:107,048,417...107,053,655
Ensembl chr11:110,817,016...110,896,829 		JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18283110) MGI
TreeGrafter		 PMID:18283110 GO_REF:0000118 NCBI chr 8:30,145,628...30,232,903
Ensembl chr 8:27,334,129...27,420,049 		JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22164254) Ensembl
TreeGrafter
MGI		 PMID:22164254 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137 		JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (PMID:22164254) MGI PMID:22164254 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16768
    reproductive process 1734
      meiotic cell cycle process 254
        chromosome organization involved in meiotic cell cycle 73
          synaptonemal complex assembly 26
            lateral element assembly 2
            positive regulation of synaptonemal complex assembly 0
            regulation of synaptonemal complex assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 16768
    cellular process 15760
      cellular component organization or biogenesis 6719
        cellular component organization 6510
          organelle organization 3660
            organelle fission 524
              nuclear division 471
                meiotic nuclear division 223
                  meiosis I 142
                    homologous chromosome segregation 76
                      homologous chromosome pairing at meiosis 57
                        synaptonemal complex assembly 26
                          lateral element assembly 2
                          positive regulation of synaptonemal complex assembly 0
                          regulation of synaptonemal complex assembly + 0
paths to the root