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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptonemal complex assembly
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Accession:GO:0007130 term browser browse the term
Definition:The cell cycle process in which the synaptonemal complex is formed. This is a structure that holds paired chromosomes together during prophase I of meiosis and that promotes genetic recombination.
Synonyms:exact_synonym: synaptonemal complex formation


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synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago4 argonaute RISC component 4 acts_upstream_of_or_within ISO MGI:5438526 (MGI:5437526|PMID:22863743) RGD PMID:22863743 MGI:5437526 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:3808636|PMID:18678708)
UniProt
RGD
PMID:18678708 GO_REF:0000024 MGI:3808636 NCBI chr20:5,124,512...5,138,084
Ensembl chr20:5,125,349...5,138,084
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO MGI:3606747 (MGI:2664436|PMID:12815066), (MGI:3606735|PMID:11702780) RGD PMID:11702780 PMID:12815066 MGI:2664436 MGI:3606735 NCBI chr 1:143,171,457...143,278,485
Ensembl chr 1:143,171,264...143,278,485
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO MGI:3718790 (MGI:3717933|PMID:17599069) RGD PMID:17599069 MGI:3717933 NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980
JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5009722|PMID:21478856)
PMID:21873635
UniProt
RGD
PMID:21478856, PMID:21873635 GO_REF:0000024 MGI:5009722, RGD:13792537 NCBI chr 2:197,681,820...197,720,197
Ensembl chr 2:197,682,000...197,719,254
JBrowse link
G LOC689986 hypothetical protein LOC689986 involved_in ISO (MGI:6400008|PMID:30949703) RGD PMID:30949703 MGI:6400008 NCBI chr14:3,247,640...3,288,017
Ensembl chr14:3,248,080...3,288,017
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:8,973,861...9,039,616
Ensembl chr 5:8,978,010...9,038,594
JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO (MGI:5770021|PMID:26742488) RGD PMID:26742488 MGI:5770021 NCBI chr10:90,622,954...90,641,883
Ensembl chr10:90,622,992...90,642,151
JBrowse link
G Mlh3 mutL homolog 3 acts_upstream_of_or_within ISO MGI:2384218 (MGI:3612193|PMID:16260499) RGD PMID:16260499 MGI:3612193 NCBI chr 6:109,059,386...109,095,876
Ensembl chr 6:109,059,341...109,095,557
JBrowse link
G Rad21 RAD21 cohesin complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:91,511,755...91,538,673
Ensembl chr 7:91,511,756...91,538,673
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1349669|MGI:1929645 (MGI:5428050|PMID:22711701), (MGI:5567006|PMID:24589552)
RGD PMID:22711701 PMID:24589552, PMID:21873635 MGI:5428050 MGI:5567006, RGD:13792537 NCBI chr 3:147,163,335...147,191,008
Ensembl chr 3:147,163,838...147,188,929
JBrowse link
G Rec8 REC8 meiotic recombination protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1349669|MGI:3652039 (MGI:5428050|PMID:22711701), (MGI:5567006|PMID:24589552)
RGD PMID:22711701 PMID:24589552, PMID:21873635 MGI:5428050 MGI:5567006, RGD:13792537 NCBI chr15:34,296,922...34,304,387
Ensembl chr15:34,296,922...34,304,552
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks acts_upstream_of_or_within ISO MGI:1929645|MGI:2178805|MGI:3652039 (MGI:5567006|PMID:24589552), (MGI:5805564|PMID:27760146) RGD PMID:24589552 PMID:27760146 MGI:5567006 MGI:5805564 NCBI chr 3:170,991,573...171,008,226
Ensembl chr 3:170,994,038...171,013,185
JBrowse link
G Syce1 synaptonemal complex central element protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:213,523,638...213,534,641
Ensembl chr 1:213,523,639...213,534,641
JBrowse link
G Syce1l synaptonemal complex central element protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:45,946,422...45,956,822
Ensembl chr19:45,946,236...45,956,844
JBrowse link
G Syce2 synaptonemal complex central element protein 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:25,982,003...26,002,399
Ensembl chr19:25,983,169...26,001,317
JBrowse link
G Syce3 synaptonemal complex central element protein 3 involved_in IBA
ISO
PMID:21873635
(MGI:5008660|PMID:21637789)
RGD PMID:21637789, PMID:21873635 MGI:5008660, RGD:13792537 NCBI chr 7:130,360,511...130,386,673
Ensembl chr 7:130,360,517...130,368,819
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:3579731|PMID:15937223), (MGI:3581466|PMID:15944401)
MGI:105931|MGI:109542|MGI:3580000 (MGI:5315075|PMID:22164254)
UniProt
RGD
PMID:15937223 PMID:15944401 PMID:22164254 GO_REF:0000024 MGI:3579731 MGI:3581466 MGI:5315075 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Sycp3 synaptonemal complex protein 3 involved_in
acts_upstream_of_or_within
ISO (MGI:1352918|PMID:10678170)
MGI:1913904 (MGI:5315075|PMID:22164254)
RGD PMID:10678170 PMID:22164254 MGI:1352918 MGI:5315075 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link
G Syde1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (MGI:5515279|PMID:23791195) RGD PMID:23791195 MGI:5515279 NCBI chr 7:14,037,646...14,043,632
Ensembl chr 7:14,037,620...14,043,779
JBrowse link
G Tex11 testis expressed 11 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:3526163 (MGI:3774244|PMID:18316482)
RGD PMID:18316482, PMID:21873635 MGI:3774244, RGD:13792537 NCBI chr  X:70,670,212...70,946,621
Ensembl chr  X:70,670,322...70,946,565
JBrowse link
G Tex12 testis expressed 12 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:109542|MGI:3811722 (MGI:5315075|PMID:22164254)
RGD PMID:22164254, PMID:21873635 MGI:5315075, RGD:13792537 NCBI chr 8:54,991,501...54,999,454
Ensembl chr 8:54,992,841...54,994,871
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within ISO MGI:3526165 (MGI:3794139|PMID:18283110) RGD PMID:18283110 MGI:3794139 NCBI chr16:62,313,284...62,373,288
Ensembl chr16:62,313,263...62,373,253
JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in ISS
ISO
GO_REF:0000024
(MGI:4821667|PMID:20711356)
UniProt
RGD
PMID:20711356 GO_REF:0000024 MGI:4821667 NCBI chr 1:31,967,980...32,012,923
Ensembl chr 1:31,967,978...32,012,919
JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:109542 (MGI:5315075|PMID:22164254)
GO_REF:0000107
RGD
Ensembl
PMID:22164254, PMID:21873635 GO_REF:0000107 MGI:5315075, RGD:13792537 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19611
    reproductive process 1800
      meiotic cell cycle process 229
        chromosome organization involved in meiotic cell cycle 78
          synaptonemal complex assembly 24
            lateral element assembly 2
            positive regulation of synaptonemal complex assembly 0
            regulation of synaptonemal complex assembly + 0
Path 2
Term Annotations click to browse term
  biological_process 19611
    cellular process 18456
      cellular component organization or biogenesis 6723
        cellular component organization 6478
          organelle organization 4055
            organelle fission 509
              nuclear division 453
                meiotic nuclear division 203
                  meiosis I 132
                    homologous chromosome segregation 68
                      homologous chromosome pairing at meiosis 55
                        synaptonemal complex assembly 24
                          lateral element assembly 2
                          positive regulation of synaptonemal complex assembly 0
                          regulation of synaptonemal complex assembly + 0
paths to the root