ONTOLOGY REPORT - ANNOTATIONS
Term: homologous chromosome pairing at meiosis
Accession: GO:0007129
browse the term
Definition: The meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Homologous chromosome pairing begins when the chromosome arms begin to pair from the clustered telomeres and ends when synaptonemal complex or linear element assembly is complete.
Synonyms: narrow_synonym: chromosomal synapsis; synapsis
related_synonym: chromosomal pairing
xref: Wikipedia:Synapsis
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ANKRD31
ankyrin repeat domain 31
involved_in
ISO
(PMID:31000436), (PMID:31003867)
UniProt
PMID:31000436 PMID:31003867
NCBI chr 2:84,148,363...84,320,823
Ensembl chr 2:84,149,358...84,366,190
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BEND2
BEN domain containing 2
acts_upstream_of_or_within
ISO
(PMID:35613276)
MGI
PMID:35613276
NCBI chr X:14,635,795...14,703,934
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BRIP1
BRCA1 interacting helicase 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:26490168)
Ensembl MGI
PMID:26490168
GO_REF:0000107
NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,498,138...36,639,847
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C1H14orf39
chromosome 1 C14orf39 homolog
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,490...189,470,541
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CCNE1
cyclin E1
acts_upstream_of_or_within
ISO
(PMID:24586195)
MGI
PMID:24586195
NCBI chr 6:39,919,541...39,933,224
Ensembl chr 6:39,919,624...39,933,363
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CCNE2
cyclin E2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24586195)
Ensembl MGI
PMID:24586195
GO_REF:0000107
NCBI chr 4:41,802,090...41,821,870
Ensembl chr 4:41,804,377...41,821,874
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DMC1
DNA meiotic recombinase 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17696610)
Ensembl MGI
PMID:17696610
GO_REF:0000107
NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,177...9,470,113
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FANCD2
FA complementation group D2
involved_in acts_upstream_of_or_within
IEA ISO IBA
(PMID:12893777)
Ensembl MGI GO_Central
PMID:12893777
GO_REF:0000033 GO_REF:0000107
NCBI chr13:66,241,951...66,308,601
Ensembl chr13:66,241,967...66,310,433
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HORMAD1
HORMA domain containing 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22530760)
Ensembl MGI
PMID:22530760
GO_REF:0000107
NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650
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IHO1
interactor of HORMAD1 1
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr13:31,802,963...31,836,911
Ensembl chr13:31,802,948...31,837,912
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KASH5
KASH domain containing 5
involved_in acts_upstream_of_or_within
IEA IBA ISO
(PMID:24062341)
Ensembl GO_Central MGI
PMID:24062341
GO_REF:0000033 GO_REF:0000107
NCBI chr 6:54,476,989...54,501,099
Ensembl chr 6:54,477,058...54,500,887
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MAEL
maelstrom spermatogenic transposon silencer
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18694567)
Ensembl MGI
PMID:18694567
GO_REF:0000107
NCBI chr 4:83,990,266...84,040,465
Ensembl chr 4:83,990,273...84,040,465
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MAJIN
membrane anchored junction protein
acts_upstream_of_or_within involved_in
ISO
(PMID:30718482) (PMID:26548954)
MGI UniProt
PMID:26548954 PMID:30718482
NCBI chr 2:7,209,376...7,244,400
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MEI4
meiotic double-stranded break formation protein 4
involved_in acts_upstream_of_or_within
IEA IBA ISO
(PMID:20551173)
Ensembl GO_Central MGI
PMID:20551173
GO_REF:0000033 GO_REF:0000107
NCBI chr 1:88,188,920...88,399,072
Ensembl chr 1:88,189,903...88,399,137
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MEIOB
meiosis specific with OB-fold
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 3:40,092,689...40,133,173
Ensembl chr 3:40,092,732...40,133,171
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MLH1
mutL homolog 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:8674118)
Ensembl MGI
PMID:8674118
GO_REF:0000107
NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,203...21,877,757
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MND1
meiotic nuclear divisions 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:75,680,604...75,755,811
Ensembl chr 8:75,689,845...75,755,768
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MRE11
MRE11 homolog, double strand break repair nuclease
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17291760)
Ensembl MGI
PMID:17291760
GO_REF:0000107
NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,361...26,634,567
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MSH4
mutS homolog 4
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,691...137,534,233
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MSH5
mutS homolog 5
acts_upstream_of_or_within
ISO
(PMID:10809667), (PMID:15467367)
MGI
PMID:10809667 PMID:15467367
NCBI chr 7:23,852,864...23,872,760
Ensembl chr 7:23,852,918...23,872,760
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NAE1
NEDD8 activating enzyme E1 subunit 1
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr 6:27,511,541...27,540,142
Ensembl chr 6:27,511,466...27,540,118
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NDC1
NDC1 transmembrane nucleoporin
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24045954)
Ensembl MGI
PMID:24045954
GO_REF:0000107
NCBI chr 6:158,458,597...158,515,057
Ensembl chr 6:158,458,840...158,514,785
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PSMC3IP
PSMC3 interacting protein
involved_in
IEA IBA
Ensembl GO_Central
GO_REF:0000033 GO_REF:0000107
NCBI chr12:20,244,243...20,250,151
Ensembl chr12:20,244,304...20,250,159
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RAD21L1
RAD21 cohesin complex component like 1
acts_upstream_of_or_within
ISO
(PMID:21743440)
MGI
PMID:21743440
NCBI chr17:34,035,526...34,064,215
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REC8
REC8 meiotic recombination protein
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17696610)
Ensembl MGI
PMID:17696610
GO_REF:0000107
NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537
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RNF212
ring finger protein 212
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 8:393,707...413,952
Ensembl chr 8:399,715...413,896
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RNF212B
ring finger protein 212B
involved_in
ISO
(PMID:38865271)
UniProt
PMID:38865271
NCBI chr 7:75,798,895...75,831,455
Ensembl chr 7:75,796,882...75,829,620
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SIRT7
sirtuin 7
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:1,078,155...1,084,112
Ensembl chr12:1,078,166...1,084,119
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SPATA22
spermatogenesis associated 22
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22011390)
InterPro MGI Ensembl
PMID:22011390
GO_REF:0000002 GO_REF:0000107
NCBI chr12:49,573,050...49,609,232
Ensembl chr12:49,576,835...49,608,237
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SPO11
SPO11 initiator of meiotic double strand breaks
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24589552) (PMID:18694567)
Ensembl MGI
PMID:18694567 PMID:24589552
GO_REF:0000107
NCBI chr17:57,730,676...57,745,875
Ensembl chr17:57,730,675...57,745,875
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STAG3
STAG3 cohesin complex component
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24797475)
Ensembl MGI
PMID:24797475
GO_REF:0000107
NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,175,915...8,211,889
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SUN1
Sad1 and UNC84 domain containing 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24589552)
Ensembl MGI
PMID:24589552
GO_REF:0000107
NCBI chr 3:485,980...532,974
Ensembl chr 3:486,021...530,869
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SYCP1
synaptonemal complex protein 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
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SYCP3
synaptonemal complex protein 3
acts_upstream_of_or_within
ISO
(PMID:15870106)
MGI
PMID:15870106
NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
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TERB1
telomere repeat binding bouquet formation protein 1
involved_in acts_upstream_of_or_within
IEA ISO IBA
(PMID:30718482)
Ensembl MGI GO_Central
PMID:30718482
GO_REF:0000033 GO_REF:0000107
NCBI chr 6:27,450,923...27,509,969
Ensembl chr 6:27,450,632...27,540,118
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TERB2
telomere repeat binding bouquet formation protein 2
involved_in acts_upstream_of_or_within
IEA ISO IBA
(PMID:30718482)
Ensembl MGI GO_Central
PMID:30718482
GO_REF:0000033 GO_REF:0000107
NCBI chr 1:126,738,520...126,767,948
Ensembl chr 1:126,738,663...126,768,126
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TEX15
testis expressed 15, meiosis and synapsis associated
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18283110)
InterPro MGI
PMID:18283110
GO_REF:0000002
NCBI chr15:54,210,139...54,277,609
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ZCWPW1
zinc finger CW-type and PWWP domain containing 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:31453335), (PMID:32374261)
Ensembl ARUK-UCL
PMID:31453335 PMID:32374261
GO_REF:0000107
NCBI chr 3:8,318,683...8,356,195
Ensembl chr 3:8,323,191...8,358,487
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BRIP1
BRCA1 interacting helicase 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:26490168)
Ensembl MGI
PMID:26490168
GO_REF:0000107
NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,498,138...36,639,847
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CCNB1IP1
cyclin B1 interacting protein 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17784788)
Ensembl MGI
PMID:17784788
GO_REF:0000107
NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,564,122...78,575,462
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MSH5
mutS homolog 5
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 7:23,852,864...23,872,760
Ensembl chr 7:23,852,918...23,872,760
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RNF212
ring finger protein 212
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 8:393,707...413,952
Ensembl chr 8:399,715...413,896
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RNF212B
ring finger protein 212B
involved_in
ISO
(PMID:38865271)
UniProt
PMID:38865271
NCBI chr 7:75,798,895...75,831,455
Ensembl chr 7:75,796,882...75,829,620
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SYCP1
synaptonemal complex protein 1
involved_in acts_upstream_of_or_within
IEA ISO IBA
(PMID:22164254)
Ensembl MGI GO_Central
PMID:22164254
GO_REF:0000033 GO_REF:0000107
NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
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SYCP3
synaptonemal complex protein 3
acts_upstream_of_or_within involved_in
ISO
(PMID:22164254) (PMID:12004129)
MGI UniProt
PMID:12004129 PMID:22164254
NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
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TEX11
testis expressed 11
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:18316482)
Ensembl MGI
PMID:18316482
GO_REF:0000107
NCBI chr X:56,543,933...56,925,104
Ensembl chr X:56,544,560...56,925,779
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UBE2B
ubiquitin conjugating enzyme E2 B
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:12556476)
Ensembl MGI
PMID:12556476
GO_REF:0000107
NCBI chr 2:136,652,764...136,667,213
Ensembl chr 2:136,652,785...136,667,949
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SYCP1
synaptonemal complex protein 1
involved_in acts_upstream_of_or_within
IEA IBA ISO
(PMID:22164254)
Ensembl GO_Central MGI
PMID:22164254
GO_REF:0000033 GO_REF:0000107
NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
G
SYCP3
synaptonemal complex protein 3
acts_upstream_of_or_within
ISO
(PMID:22164254)
MGI
PMID:22164254
NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
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ACYP1
acylphosphatase 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,555...98,247,125
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AGO4
argonaute RISC component 4
acts_upstream_of_or_within
ISO
(PMID:22863743)
MGI
PMID:22863743
NCBI chr 6:91,967,499...92,013,030
Ensembl chr 6:91,973,119...92,012,990
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BAG6
BAG cochaperone 6
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:23,756,897...23,768,659
Ensembl chr 7:23,756,897...23,768,666
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C1H14orf39
chromosome 1 C14orf39 homolog
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,490...189,470,541
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C1orf146
chromosome 1 open reading frame 146
involved_in
IEA IBA
InterPro GO_Central Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107
Ensembl chr 4:124,812,631...124,833,375
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C4H1orf146
chromosome 4 C1orf146 homolog
involved_in
ISO
(PMID:30949703)
UniProt
PMID:30949703
NCBI chr 4:124,813,337...124,843,305
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CPEB1
cytoplasmic polyadenylation element binding protein 1
acts_upstream_of_or_within
ISO
(PMID:12815066) (PMID:11702780)
MGI
PMID:11702780 PMID:12815066
NCBI chr 7:52,329,054...52,382,408
Ensembl chr 7:52,304,472...52,383,732
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EHMT2
euchromatic histone lysine methyltransferase 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:17599069)
Ensembl MGI
PMID:17599069
GO_REF:0000107
NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,992,697
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HORMAD1
HORMA domain containing 1
involved_in
IEA ISS
Ensembl UniProt
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650
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MCMDC2
minichromosome maintenance domain containing 2
acts_upstream_of_or_within
ISO
(PMID:27760146)
MGI
PMID:27760146
NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
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MEIOC
meiosis specific with coiled-coil domain
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr12:18,652,582...18,663,227
Ensembl chr12:18,651,511...18,671,987
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RAD21L1
RAD21 cohesin complex component like 1
acts_upstream_of_or_within
ISO
(PMID:22711701) (PMID:24589552)
MGI
PMID:22711701 PMID:24589552
NCBI chr17:34,035,526...34,064,215
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REC8
REC8 meiotic recombination protein
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:24589552) (PMID:22711701)
Ensembl MGI
PMID:22711701 PMID:24589552
GO_REF:0000107
NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537
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SHOC1
shortage in chiasmata 1
involved_in
IEA
Ensembl
GO_REF:0000107
NCBI chr 1:252,465,893...252,555,063
Ensembl chr 1:252,466,222...252,562,066
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SPO11
SPO11 initiator of meiotic double strand breaks
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:27760146) (PMID:24589552)
Ensembl MGI
PMID:24589552 PMID:27760146
GO_REF:0000107
NCBI chr17:57,730,676...57,745,875
Ensembl chr17:57,730,675...57,745,875
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SYCE1
synaptonemal complex central element protein 1
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr14:141,726,708...141,737,830
Ensembl chr14:141,726,208...141,735,919
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SYCE2
synaptonemal complex central element protein 2
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 2:66,118,439...66,133,454
Ensembl chr 2:66,128,492...66,131,963
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SYCE3
synaptonemal complex central element protein 3
involved_in
IEA IBA
InterPro GO_Central Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107
NCBI chr 5:168,908...201,037
Ensembl chr 5:181,056...200,832
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SYCP1
synaptonemal complex protein 1
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:22164254)
InterPro MGI Ensembl
PMID:22164254
GO_REF:0000002 GO_REF:0000107
NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
G
SYCP3
synaptonemal complex protein 3
acts_upstream_of_or_within involved_in
ISO
(PMID:22164254) (PMID:10678170)
MGI UniProt
PMID:10678170 PMID:22164254
NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
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SYDE1
synapse defective Rho GTPase homolog 1
acts_upstream_of_or_within
ISO
(PMID:23791195)
MGI
PMID:23791195
NCBI chr 2:62,447,030...62,453,944
Ensembl chr 2:62,447,037...62,453,949
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TERB2
telomere repeat binding bouquet formation protein 2
involved_in acts_upstream_of_or_within
IEA ISO
(PMID:30718482)
Ensembl MGI
PMID:30718482
GO_REF:0000107
NCBI chr 1:126,738,520...126,767,948
Ensembl chr 1:126,738,663...126,768,126
G
TEX11
testis expressed 11
involved_in acts_upstream_of_or_within
IEA ISO IBA
(PMID:18316482)
Ensembl MGI GO_Central
PMID:18316482
GO_REF:0000033 GO_REF:0000107
NCBI chr X:56,543,933...56,925,104
Ensembl chr X:56,544,560...56,925,779
G
TEX12
testis expressed 12
involved_in acts_upstream_of_or_within
IEA IBA ISO
(PMID:22164254)
Ensembl GO_Central MGI
PMID:22164254
GO_REF:0000033 GO_REF:0000107
NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,148...39,869,979
G
TEX15
testis expressed 15, meiosis and synapsis associated
acts_upstream_of_or_within
ISO
(PMID:18283110)
MGI
PMID:18283110
NCBI chr15:54,210,139...54,277,609
G
TRIP13
thyroid hormone receptor interactor 13
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr16:79,458,843...79,473,705
Ensembl chr16:79,458,847...79,473,712
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