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ONTOLOGY REPORT - ANNOTATIONS


Term:homologous chromosome pairing at meiosis
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Accession:GO:0007129 term browser browse the term
Definition:The meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Homologous chromosome pairing begins when the chromosome arms begin to pair from the clustered telomeres and ends when synaptonemal complex or linear element assembly is complete.
Synonyms:narrow_synonym: chromosomal synapsis;   synapsis
 related_synonym: chromosomal pairing
 xref: Wikipedia:Synapsis



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homologous chromosome pairing at meiosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD31 ankyrin repeat domain 31 involved_in ISO (PMID:31000436), (PMID:31003867) UniProt PMID:31000436 PMID:31003867 NCBI chr 2:84,148,363...84,320,823
Ensembl chr 2:84,149,358...84,366,190
JBrowse link
G BEND2 BEN domain containing 2 acts_upstream_of_or_within ISO (PMID:35613276) MGI PMID:35613276 NCBI chr  X:14,635,795...14,703,934 JBrowse link
G BRIP1 BRCA1 interacting helicase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26490168) Ensembl
MGI
PMID:26490168 GO_REF:0000107 NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,498,138...36,639,847
JBrowse link
G C1H14orf39 chromosome 1 C14orf39 homolog involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,490...189,470,541
JBrowse link
G CCNE1 cyclin E1 acts_upstream_of_or_within ISO (PMID:24586195) MGI PMID:24586195 NCBI chr 6:39,919,541...39,933,224
Ensembl chr 6:39,919,624...39,933,363
JBrowse link
G CCNE2 cyclin E2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24586195) Ensembl
MGI
PMID:24586195 GO_REF:0000107 NCBI chr 4:41,802,090...41,821,870
Ensembl chr 4:41,804,377...41,821,874
JBrowse link
G DMC1 DNA meiotic recombinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17696610) Ensembl
MGI
PMID:17696610 GO_REF:0000107 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,177...9,470,113
JBrowse link
G FANCD2 FA complementation group D2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(PMID:12893777) Ensembl
MGI
GO_Central
PMID:12893777 GO_REF:0000033 GO_REF:0000107 NCBI chr13:66,241,951...66,308,601
Ensembl chr13:66,241,967...66,310,433
JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22530760) Ensembl
MGI
PMID:22530760 GO_REF:0000107 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650
JBrowse link
G IHO1 interactor of HORMAD1 1 involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr13:31,802,963...31,836,911
Ensembl chr13:31,802,948...31,837,912
JBrowse link
G KASH5 KASH domain containing 5 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:24062341) Ensembl
GO_Central
MGI
PMID:24062341 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:54,476,989...54,501,099
Ensembl chr 6:54,477,058...54,500,887
JBrowse link
G MAEL maelstrom spermatogenic transposon silencer involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18694567) Ensembl
MGI
PMID:18694567 GO_REF:0000107 NCBI chr 4:83,990,266...84,040,465
Ensembl chr 4:83,990,273...84,040,465
JBrowse link
G MAJIN membrane anchored junction protein acts_upstream_of_or_within
involved_in
ISO (PMID:30718482)
(PMID:26548954)
MGI
UniProt
PMID:26548954 PMID:30718482 NCBI chr 2:7,209,376...7,244,400 JBrowse link
G MEI4 meiotic double-stranded break formation protein 4 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:20551173) Ensembl
GO_Central
MGI
PMID:20551173 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:88,188,920...88,399,072
Ensembl chr 1:88,189,903...88,399,137
JBrowse link
G MEIOB meiosis specific with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:40,092,689...40,133,173
Ensembl chr 3:40,092,732...40,133,171
JBrowse link
G MLH1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8674118) Ensembl
MGI
PMID:8674118 GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,203...21,877,757
JBrowse link
G MND1 meiotic nuclear divisions 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:75,680,604...75,755,811
Ensembl chr 8:75,689,845...75,755,768
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17291760) Ensembl
MGI
PMID:17291760 GO_REF:0000107 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,361...26,634,567
JBrowse link
G MSH4 mutS homolog 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,691...137,534,233
JBrowse link
G MSH5 mutS homolog 5 acts_upstream_of_or_within ISO (PMID:10809667), (PMID:15467367) MGI PMID:10809667 PMID:15467367 NCBI chr 7:23,852,864...23,872,760
Ensembl chr 7:23,852,918...23,872,760
JBrowse link
G NAE1 NEDD8 activating enzyme E1 subunit 1 involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 6:27,511,541...27,540,142
Ensembl chr 6:27,511,466...27,540,118
JBrowse link
G NDC1 NDC1 transmembrane nucleoporin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24045954) Ensembl
MGI
PMID:24045954 GO_REF:0000107 NCBI chr 6:158,458,597...158,515,057
Ensembl chr 6:158,458,840...158,514,785
JBrowse link
G PSMC3IP PSMC3 interacting protein involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr12:20,244,243...20,250,151
Ensembl chr12:20,244,304...20,250,159
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO (PMID:21743440) MGI PMID:21743440 NCBI chr17:34,035,526...34,064,215 JBrowse link
G REC8 REC8 meiotic recombination protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17696610) Ensembl
MGI
PMID:17696610 GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537
JBrowse link
G RNF212 ring finger protein 212 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:393,707...413,952
Ensembl chr 8:399,715...413,896
JBrowse link
G RNF212B ring finger protein 212B involved_in ISO (PMID:38865271) UniProt PMID:38865271 NCBI chr 7:75,798,895...75,831,455
Ensembl chr 7:75,796,882...75,829,620
JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,078,155...1,084,112
Ensembl chr12:1,078,166...1,084,119
JBrowse link
G SPATA22 spermatogenesis associated 22 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22011390) InterPro
MGI
Ensembl
PMID:22011390 GO_REF:0000002 GO_REF:0000107 NCBI chr12:49,573,050...49,609,232
Ensembl chr12:49,576,835...49,608,237
JBrowse link
G SPO11 SPO11 initiator of meiotic double strand breaks involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24589552)
(PMID:18694567)
Ensembl
MGI
PMID:18694567 PMID:24589552 GO_REF:0000107 NCBI chr17:57,730,676...57,745,875
Ensembl chr17:57,730,675...57,745,875
JBrowse link
G STAG3 STAG3 cohesin complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24797475) Ensembl
MGI
PMID:24797475 GO_REF:0000107 NCBI chr 3:8,175,908...8,211,898
Ensembl chr 3:8,175,915...8,211,889
JBrowse link
G SUN1 Sad1 and UNC84 domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24589552) Ensembl
MGI
PMID:24589552 GO_REF:0000107 NCBI chr 3:485,980...532,974
Ensembl chr 3:486,021...530,869
JBrowse link
G SYCP1 synaptonemal complex protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (PMID:15870106) MGI PMID:15870106 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
JBrowse link
G TERB1 telomere repeat binding bouquet formation protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(PMID:30718482) Ensembl
MGI
GO_Central
PMID:30718482 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:27,450,923...27,509,969
Ensembl chr 6:27,450,632...27,540,118
JBrowse link
G TERB2 telomere repeat binding bouquet formation protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(PMID:30718482) Ensembl
MGI
GO_Central
PMID:30718482 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:126,738,520...126,767,948
Ensembl chr 1:126,738,663...126,768,126
JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18283110) InterPro
MGI
PMID:18283110 GO_REF:0000002 NCBI chr15:54,210,139...54,277,609 JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31453335), (PMID:32374261) Ensembl
ARUK-UCL
PMID:31453335 PMID:32374261 GO_REF:0000107 NCBI chr 3:8,318,683...8,356,195
Ensembl chr 3:8,323,191...8,358,487
JBrowse link
chiasma assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting helicase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26490168) Ensembl
MGI
PMID:26490168 GO_REF:0000107 NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,498,138...36,639,847
JBrowse link
G CCNB1IP1 cyclin B1 interacting protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17784788) Ensembl
MGI
PMID:17784788 GO_REF:0000107 NCBI chr 7:78,553,680...78,576,057
Ensembl chr 7:78,564,122...78,575,462
JBrowse link
G MSH5 mutS homolog 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:23,852,864...23,872,760
Ensembl chr 7:23,852,918...23,872,760
JBrowse link
G RNF212 ring finger protein 212 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:393,707...413,952
Ensembl chr 8:399,715...413,896
JBrowse link
G RNF212B ring finger protein 212B involved_in ISO (PMID:38865271) UniProt PMID:38865271 NCBI chr 7:75,798,895...75,831,455
Ensembl chr 7:75,796,882...75,829,620
JBrowse link
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(PMID:22164254) Ensembl
MGI
GO_Central
PMID:22164254 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within
involved_in
ISO (PMID:22164254)
(PMID:12004129)
MGI
UniProt
PMID:12004129 PMID:22164254 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
JBrowse link
G TEX11 testis expressed 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18316482) Ensembl
MGI
PMID:18316482 GO_REF:0000107 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,779
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12556476) Ensembl
MGI
PMID:12556476 GO_REF:0000107 NCBI chr 2:136,652,764...136,667,213
Ensembl chr 2:136,652,785...136,667,949
JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:22164254) Ensembl
GO_Central
MGI
PMID:22164254 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (PMID:22164254) MGI PMID:22164254 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
JBrowse link
synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,555...98,247,125
JBrowse link
G AGO4 argonaute RISC component 4 acts_upstream_of_or_within ISO (PMID:22863743) MGI PMID:22863743 NCBI chr 6:91,967,499...92,013,030
Ensembl chr 6:91,973,119...92,012,990
JBrowse link
G BAG6 BAG cochaperone 6 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:23,756,897...23,768,659
Ensembl chr 7:23,756,897...23,768,666
JBrowse link
G C1H14orf39 chromosome 1 C14orf39 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,490...189,470,541
JBrowse link
G C1orf146 chromosome 1 open reading frame 146 involved_in IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 Ensembl chr 4:124,812,631...124,833,375 JBrowse link
G C4H1orf146 chromosome 4 C1orf146 homolog involved_in ISO (PMID:30949703) UniProt PMID:30949703 NCBI chr 4:124,813,337...124,843,305 JBrowse link
G CPEB1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO (PMID:12815066)
(PMID:11702780)
MGI PMID:11702780 PMID:12815066 NCBI chr 7:52,329,054...52,382,408
Ensembl chr 7:52,304,472...52,383,732
JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17599069) Ensembl
MGI
PMID:17599069 GO_REF:0000107 NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,992,697
JBrowse link
G HORMAD1 HORMA domain containing 1 involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:98,447,298...98,469,650
Ensembl chr 4:98,449,891...98,469,650
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO (PMID:27760146) MGI PMID:27760146 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
G MEIOC meiosis specific with coiled-coil domain involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:18,652,582...18,663,227
Ensembl chr12:18,651,511...18,671,987
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO (PMID:22711701)
(PMID:24589552)
MGI PMID:22711701 PMID:24589552 NCBI chr17:34,035,526...34,064,215 JBrowse link
G REC8 REC8 meiotic recombination protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24589552)
(PMID:22711701)
Ensembl
MGI
PMID:22711701 PMID:24589552 GO_REF:0000107 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,125,537
JBrowse link
G SHOC1 shortage in chiasmata 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:252,465,893...252,555,063
Ensembl chr 1:252,466,222...252,562,066
JBrowse link
G SPO11 SPO11 initiator of meiotic double strand breaks involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27760146)
(PMID:24589552)
Ensembl
MGI
PMID:24589552 PMID:27760146 GO_REF:0000107 NCBI chr17:57,730,676...57,745,875
Ensembl chr17:57,730,675...57,745,875
JBrowse link
G SYCE1 synaptonemal complex central element protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr14:141,726,708...141,737,830
Ensembl chr14:141,726,208...141,735,919
JBrowse link
G SYCE2 synaptonemal complex central element protein 2 involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:66,118,439...66,133,454
Ensembl chr 2:66,128,492...66,131,963
JBrowse link
G SYCE3 synaptonemal complex central element protein 3 involved_in IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:168,908...201,037
Ensembl chr 5:181,056...200,832
JBrowse link
G SYCP1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22164254) InterPro
MGI
Ensembl
PMID:22164254 GO_REF:0000002 GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,591,743...105,730,398
JBrowse link
G SYCP3 synaptonemal complex protein 3 acts_upstream_of_or_within
involved_in
ISO (PMID:22164254)
(PMID:10678170)
MGI
UniProt
PMID:10678170 PMID:22164254 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,034...82,501,656
JBrowse link
G SYDE1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (PMID:23791195) MGI PMID:23791195 NCBI chr 2:62,447,030...62,453,944
Ensembl chr 2:62,447,037...62,453,949
JBrowse link
G TERB2 telomere repeat binding bouquet formation protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30718482) Ensembl
MGI
PMID:30718482 GO_REF:0000107 NCBI chr 1:126,738,520...126,767,948
Ensembl chr 1:126,738,663...126,768,126
JBrowse link
G TEX11 testis expressed 11 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
(PMID:18316482) Ensembl
MGI
GO_Central
PMID:18316482 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:56,543,933...56,925,104
Ensembl chr  X:56,544,560...56,925,779
JBrowse link
G TEX12 testis expressed 12 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:22164254) Ensembl
GO_Central
MGI
PMID:22164254 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,148...39,869,979
JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within ISO (PMID:18283110) MGI PMID:18283110 NCBI chr15:54,210,139...54,277,609 JBrowse link
G TRIP13 thyroid hormone receptor interactor 13 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr16:79,458,843...79,473,705
Ensembl chr16:79,458,847...79,473,712
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18954
    reproductive process 1794
      meiotic cell cycle process 250
        chromosome organization involved in meiotic cell cycle 73
          homologous chromosome pairing at meiosis 57
            chiasma assembly 9
            linear element assembly + 0
            synaptonemal complex assembly + 26
Path 2
Term Annotations click to browse term
  biological_process 18954
    cellular process 18495
      cellular component organization or biogenesis 7489
        cellular component organization 7284
          organelle organization 3518
            organelle fission 518
              nuclear division 463
                meiotic nuclear division 219
                  meiosis I 136
                    homologous chromosome segregation 73
                      homologous chromosome pairing at meiosis 57
                        chiasma assembly 9
                        linear element assembly + 0
                        synaptonemal complex assembly + 26
paths to the root