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ONTOLOGY REPORT - ANNOTATIONS


Term:homologous chromosome pairing at meiosis
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Accession:GO:0007129 term browser browse the term
Definition:The meiotic cell cycle process where side by side pairing and physical juxtaposition of homologous chromosomes is created during meiotic prophase. Homologous chromosome pairing begins when the chromosome arms begin to pair from the clustered telomeres and ends when synaptonemal complex or linear element assembly is complete.
Synonyms:narrow_synonym: chromosomal synapsis;   synapsis
 related_synonym: chromosomal pairing
 xref: Wikipedia:Synapsis


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homologous chromosome pairing at meiosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd31 ankyrin repeat domain 31 involved_in ISO (MGI:6316415|PMID:31003867), (MGI:6316551|PMID:31000436) UniProt PMID:31000436 PMID:31003867 MGI:6316415 MGI:6316551 NCBI chrNW_004955425:25,483,400...25,647,904
Ensembl chrNW_004955425:25,483,715...25,626,546
JBrowse link
G Brip1 BRCA1 interacting helicase 1 acts_upstream_of_or_within ISO (MGI:5700253|PMID:26490168) MGI PMID:26490168 MGI:5700253 NCBI chrNW_004955451:2,705,834...2,820,610
Ensembl chrNW_004955451:2,707,793...2,818,592
JBrowse link
G Ccne1 cyclin E1 acts_upstream_of_or_within ISO (MGI:5698037|PMID:24586195) MGI PMID:24586195 MGI:5698037 NCBI chrNW_004955468:7,803,610...7,814,872
Ensembl chrNW_004955468:7,803,346...7,814,872
JBrowse link
G Ccne2 cyclin E2 acts_upstream_of_or_within ISO (MGI:5698037|PMID:24586195) MGI PMID:24586195 MGI:5698037 NCBI chrNW_004955417:11,027,749...11,039,945
Ensembl chrNW_004955417:11,027,749...11,040,017
JBrowse link
G CUNH14orf39 chromosome unknown C14orf39 homolog involved_in ISO (MGI:5822939|PMID:27796301) UniProt PMID:27796301 MGI:5822939 NCBI chrNW_004955466:9,158,022...9,194,088
Ensembl chrNW_004955466:9,157,944...9,195,226
JBrowse link
G Dmc1 DNA meiotic recombinase 1 acts_upstream_of_or_within ISO (MGI:3719060|PMID:17696610) MGI PMID:17696610 MGI:3719060 NCBI chrNW_004955413:24,685,311...24,724,269
Ensembl chrNW_004955413:24,684,073...24,724,344
JBrowse link
G Fancd2 FA complementation group D2 acts_upstream_of_or_within ISO (MGI:2670547|PMID:12893777) MGI PMID:12893777 MGI:2670547 NCBI chrNW_004955561:1,460,080...1,538,026
Ensembl chrNW_004955561:1,464,869...1,538,045
JBrowse link
G Hormad1 HORMA domain containing 1 acts_upstream_of_or_within ISO (MGI:5586966|PMID:22530760) MGI PMID:22530760 MGI:5586966 NCBI chrNW_004955413:130,214...155,381
Ensembl chrNW_004955413:132,711...152,720
JBrowse link
G Iho1 interactor of HORMAD1 1 involved_in ISO (MGI:5822944|PMID:27723721) UniProt PMID:27723721 MGI:5822944 NCBI chrNW_004955532:1,198,316...1,226,875 JBrowse link
G Kash5 KASH domain containing 5 acts_upstream_of_or_within ISO (MGI:5515826|PMID:24062341) MGI PMID:24062341 MGI:5515826 NCBI chrNW_004955559:1,416,844...1,438,451 JBrowse link
G Mael maelstrom spermatogenic transposon silencer acts_upstream_of_or_within ISO (MGI:3813746|PMID:18694567) MGI PMID:18694567 MGI:3813746 NCBI chrNW_004955462:9,902,978...9,934,814
Ensembl chrNW_004955462:9,903,006...9,934,570
JBrowse link
G Majin membrane anchored junction protein involved_in ISO (MGI:5704279|PMID:26548954) UniProt PMID:26548954 MGI:5704279 NCBI chrNW_004955422:20,216,773...20,249,042 JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 acts_upstream_of_or_within ISO (MGI:4457793|PMID:20551173) MGI PMID:20551173 MGI:4457793 NCBI chrNW_004955502:5,835,608...6,017,945
Ensembl chrNW_004955502:5,831,658...6,018,521
JBrowse link
G Meiob meiosis specific with OB-fold involved_in ISO (MGI:5527015|PMID:24068956), (MGI:5538413|PMID:24240703) UniProt PMID:24068956 PMID:24240703 MGI:5527015 MGI:5538413 NCBI chrNW_004955442:15,409,344...15,444,996
Ensembl chrNW_004955442:15,409,344...15,444,996
JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO (MGI:81371|PMID:8674118) MGI PMID:8674118 MGI:81371 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Msh4 mutS homolog 4 acts_upstream_of_or_within ISO (MGI:1858570|PMID:10809667), (MGI:3056006|PMID:15467367) MGI PMID:10809667 PMID:15467367 MGI:1858570 MGI:3056006 NCBI chrNW_004955423:17,093,573...17,154,910
Ensembl chrNW_004955423:17,093,573...17,154,910
JBrowse link
G Msh5 mutS homolog 5 acts_upstream_of_or_within ISO (MGI:1858570|PMID:10809667), (MGI:3056006|PMID:15467367) MGI PMID:10809667 PMID:15467367 MGI:1858570 MGI:3056006 NCBI chrNW_004955437:275,976...297,268 JBrowse link
G Ndc1 NDC1 transmembrane nucleoporin acts_upstream_of_or_within ISO (MGI:5543710|PMID:24045954) MGI PMID:24045954 MGI:5543710 NCBI chrNW_004955464:5,424,710...5,476,657
Ensembl chrNW_004955464:5,424,710...5,476,657
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO (MGI:5288570|PMID:21743440) MGI PMID:21743440 MGI:5288570 NCBI chrNW_004955596:455,932...485,853
Ensembl chrNW_004955596:457,835...486,046
JBrowse link
G Rec8 REC8 meiotic recombination protein acts_upstream_of_or_within ISO (MGI:3719060|PMID:17696610) MGI PMID:17696610 MGI:3719060 NCBI chrNW_004955409:36,223,783...36,231,749
Ensembl chrNW_004955409:36,223,844...36,230,948
JBrowse link
G Sirt7 sirtuin 7 involved_in ISO (MGI:6378020|PMID:31256246) UniProt PMID:31256246 MGI:6378020 NCBI chrNW_004955506:1,252,271...1,258,728
Ensembl chrNW_004955506:1,252,274...1,258,728
JBrowse link
G Spata22 spermatogenesis associated 22 acts_upstream_of_or_within ISO (MGI:5314623|PMID:22011390) MGI PMID:22011390 MGI:5314623 NCBI chrNW_004955467:13,304,314...13,325,228
Ensembl chrNW_004955467:13,306,496...13,325,300
JBrowse link
G Spo11 SPO11 initiator of meiotic double stranded breaks acts_upstream_of_or_within ISO (MGI:5567006|PMID:24589552)
(MGI:3813746|PMID:18694567)
MGI PMID:18694567 PMID:24589552 MGI:3813746 MGI:5567006 NCBI chrNW_004955445:2,088,144...2,103,385
Ensembl chrNW_004955445:2,088,144...2,103,385
JBrowse link
G Stag3 stromal antigen 3 acts_upstream_of_or_within ISO (MGI:5575825|PMID:24797475) MGI PMID:24797475 MGI:5575825 NCBI chrNW_004955573:602,635...631,775
Ensembl chrNW_004955573:602,016...630,936
JBrowse link
G Sun1 Sad1 and UNC84 domain containing 1 acts_upstream_of_or_within ISO (MGI:5567006|PMID:24589552) MGI PMID:24589552 MGI:5567006 NCBI chrNW_004955460:8,560,824...8,619,142
Ensembl chrNW_004955460:8,579,460...8,617,705
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in ISO (MGI:3579731|PMID:15937223) UniProt PMID:15937223 MGI:3579731 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (MGI:3578071|PMID:15870106) MGI PMID:15870106 MGI:3578071 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856
JBrowse link
G Terb1 telomere repeat binding bouquet formation protein 1 involved_in ISO (MGI:5545837|PMID:24413433) UniProt PMID:24413433 MGI:5545837 NCBI chrNW_004955433:23,290,030...23,332,886
Ensembl chrNW_004955433:23,288,825...23,333,151
JBrowse link
G Terb2 telomere repeat binding bouquet formation protein 2 involved_in ISO (MGI:5704279|PMID:26548954) UniProt PMID:26548954 MGI:5704279 NCBI chrNW_004955409:8,352,685...8,371,576
Ensembl chrNW_004955409:8,352,685...8,371,529
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within ISO (MGI:3794139|PMID:18283110) MGI PMID:18283110 MGI:3794139 NCBI chrNW_004955463:7,296,204...7,360,935
Ensembl chrNW_004955463:7,298,030...7,360,971
JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 acts_upstream_of_or_within
involved_in
ISO (MGI:6358520|PMID:31453335), (MGI:6442007|PMID:32374261)
(MGI:6443266|PMID:32352380), (MGI:6467709|PMID:32744506)
ARUK-UCL
UniProt
PMID:31453335 PMID:32352380 PMID:32374261 PMID:32744506 MGI:6358520 MGI:6442007 MGI:6443266 MGI:6467709 NCBI chrNW_004955573:531,277...552,703
Ensembl chrNW_004955573:535,854...552,505
JBrowse link
chiasma assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 acts_upstream_of_or_within ISO (MGI:5700253|PMID:26490168) MGI PMID:26490168 MGI:5700253 NCBI chrNW_004955451:2,705,834...2,820,610
Ensembl chrNW_004955451:2,707,793...2,818,592
JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3757893|PMID:17784788)
(MGI:5545848|PMID:24390283)
MGI
UniProt
PMID:17784788 PMID:24390283 MGI:3757893 MGI:5545848 NCBI chrNW_004955550:1,108,764...1,138,862
Ensembl chrNW_004955550:1,108,449...1,138,862
JBrowse link
G Rnf212 ring finger protein 212 involved_in ISO (MGI:5545848|PMID:24390283) UniProt PMID:24390283 MGI:5545848 NCBI chrNW_004955514:525,430...559,037
Ensembl chrNW_004955514:525,085...559,153
JBrowse link
G Sycp1 synaptonemal complex protein 1 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within
involved_in
ISO (MGI:5315075|PMID:22164254)
(MGI:2179610|PMID:12004129)
MGI
UniProt
PMID:12004129 PMID:22164254 MGI:2179610 MGI:5315075 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856
JBrowse link
G Tex11 testis expressed 11 acts_upstream_of_or_within ISO (MGI:3774244|PMID:18316482) MGI PMID:18316482 MGI:3774244 NCBI chrNW_004955475:10,057,708...10,432,087 JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B acts_upstream_of_or_within ISO (MGI:2450033|PMID:12556476) MGI PMID:12556476 MGI:2450033 NCBI chrNW_004955408:5,552,619...5,572,145
Ensembl chrNW_004955408:5,552,619...5,572,145
JBrowse link
lateral element assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sycp1 synaptonemal complex protein 1 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856
JBrowse link
synaptonemal complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago4 argonaute RISC component 4 acts_upstream_of_or_within ISO (MGI:5437526|PMID:22863743) MGI PMID:22863743 MGI:5437526 NCBI chrNW_004955452:13,882,416...13,922,590
Ensembl chrNW_004955452:13,882,416...13,922,590
JBrowse link
G Bag6 BAG cochaperone 6 involved_in ISO (MGI:3808636|PMID:18678708) UniProt PMID:18678708 MGI:3808636 NCBI chrNW_004955437:176,848...188,243
Ensembl chrNW_004955437:176,797...188,003
JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO (MGI:3606735|PMID:11702780)
(MGI:2664436|PMID:12815066)
MGI PMID:11702780 PMID:12815066 MGI:2664436 MGI:3606735 NCBI chrNW_004955416:13,963,300...14,038,691
Ensembl chrNW_004955416:13,981,657...14,039,705
JBrowse link
G CUNH1orf146 chromosome unknown C1orf146 homolog involved_in ISO (MGI:6400008|PMID:30949703) UniProt PMID:30949703 MGI:6400008 NCBI chrNW_004955423:2,233,445...2,251,205
Ensembl chrNW_004955423:2,233,543...2,258,941
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (MGI:3717933|PMID:17599069) MGI PMID:17599069 MGI:3717933 NCBI chrNW_004955437:396,736...411,144
Ensembl chrNW_004955437:396,742...411,144
JBrowse link
G Hormad1 HORMA domain containing 1 involved_in ISO (MGI:5009722|PMID:21478856) UniProt PMID:21478856 MGI:5009722 NCBI chrNW_004955413:130,214...155,381
Ensembl chrNW_004955413:132,711...152,720
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO (MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:5805564 NCBI chrNW_004955444:12,348,537...12,382,769
Ensembl chrNW_004955444:12,348,543...12,382,769
JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO (MGI:5770021|PMID:26742488) UniProt PMID:26742488 MGI:5770021 NCBI chrNW_004955451:17,534,644...17,547,095
Ensembl chrNW_004955451:17,534,659...17,545,584
JBrowse link
G Mlh3 mutL homolog 3 acts_upstream_of_or_within ISO (MGI:3612193|PMID:16260499) MGI PMID:16260499 MGI:3612193 NCBI chrNW_004955523:515,409...547,257
Ensembl chrNW_004955523:518,565...546,410
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO (MGI:5567006|PMID:24589552)
(MGI:5428050|PMID:22711701)
MGI PMID:22711701 PMID:24589552 MGI:5428050 MGI:5567006 NCBI chrNW_004955596:455,932...485,853
Ensembl chrNW_004955596:457,835...486,046
JBrowse link
G Rec8 REC8 meiotic recombination protein acts_upstream_of_or_within ISO (MGI:5567006|PMID:24589552)
(MGI:5428050|PMID:22711701)
MGI PMID:22711701 PMID:24589552 MGI:5428050 MGI:5567006 NCBI chrNW_004955409:36,223,783...36,231,749
Ensembl chrNW_004955409:36,223,844...36,230,948
JBrowse link
G Spo11 SPO11 initiator of meiotic double stranded breaks acts_upstream_of_or_within ISO (MGI:5805564|PMID:27760146)
(MGI:5567006|PMID:24589552)
MGI PMID:24589552 PMID:27760146 MGI:5567006 MGI:5805564 NCBI chrNW_004955445:2,088,144...2,103,385
Ensembl chrNW_004955445:2,088,144...2,103,385
JBrowse link
G Syce3 synaptonemal complex central element protein 3 involved_in ISO (MGI:5008660|PMID:21637789) UniProt PMID:21637789 MGI:5008660 NCBI chrNW_004955413:33,537,646...33,573,787
Ensembl chrNW_004955413:33,537,753...33,563,373
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
ISO (MGI:3581466|PMID:15944401)
(MGI:5315075|PMID:22164254)
(MGI:3579731|PMID:15937223)
HGNC-UCL
MGI
UniProt
PMID:15937223 PMID:15944401 PMID:22164254 MGI:3579731 MGI:3581466 MGI:5315075 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within
involved_in
ISO (MGI:5315075|PMID:22164254)
(MGI:1352918|PMID:10678170)
MGI
UniProt
PMID:10678170 PMID:22164254 MGI:1352918 MGI:5315075 NCBI chrNW_004955405:37,093,330...37,102,789
Ensembl chrNW_004955405:37,093,652...37,102,856
JBrowse link
G Syde1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO (MGI:5515279|PMID:23791195) MGI PMID:23791195 MGI:5515279 NCBI chrNW_004955495:8,140,152...8,147,491
Ensembl chrNW_004955495:8,136,810...8,147,289
JBrowse link
G Tex11 testis expressed 11 acts_upstream_of_or_within ISO (MGI:3774244|PMID:18316482) MGI PMID:18316482 MGI:3774244 NCBI chrNW_004955475:10,057,708...10,432,087 JBrowse link
G Tex12 testis expressed 12 acts_upstream_of_or_within ISO (MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:5315075 NCBI chrNW_004955412:13,829,637...13,834,481
Ensembl chrNW_004955412:13,831,353...13,834,481
JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated acts_upstream_of_or_within ISO (MGI:3794139|PMID:18283110) MGI PMID:18283110 MGI:3794139 NCBI chrNW_004955463:7,296,204...7,360,935
Ensembl chrNW_004955463:7,298,030...7,360,971
JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in ISO (MGI:4821667|PMID:20711356) UniProt PMID:20711356 MGI:4821667 NCBI chrNW_004955504:434,187...452,636
Ensembl chrNW_004955504:434,159...452,671
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11981
    reproductive process 1437
      meiotic cell cycle process 184
        chromosome organization involved in meiotic cell cycle 64
          homologous chromosome pairing at meiosis 47
            chiasma assembly 7
            linear element assembly + 0
            synaptonemal complex assembly + 20
Path 2
Term Annotations click to browse term
  biological_process 11981
    cellular process 11217
      cellular component organization or biogenesis 4794
        cellular component organization 4709
          organelle organization 2803
            organelle fission 424
              nuclear division 376
                meiotic nuclear division 165
                  meiosis I 100
                    homologous chromosome segregation 57
                      homologous chromosome pairing at meiosis 47
                        chiasma assembly 7
                        linear element assembly + 0
                        synaptonemal complex assembly + 20
paths to the root