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ONTOLOGY REPORT - ANNOTATIONS

Term:lysosomal transport
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Accession:GO:0007041 term browser browse the term
Definition:The directed movement of substances into, out of or within a lysosome.


show annotations for term's descendants           Sort by:
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 acts_upstream_of_or_within ISO (PMID:12837691) RGD PMID:12837691 NCBI chr 9:60,613,182...60,686,394
Ensembl chr 9:60,613,167...60,670,737 		JBrowse link
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:31996848) RGD PMID:31996848 NCBI chr 5:153,292,722...153,312,143
Ensembl chr 5:153,292,751...153,312,139 		JBrowse link
G Grn granulin precursor involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:28541286)
GO_REF:0000107
(MGI:5920379|PMID:28541286)		 UniProt
RGD
Ensembl		 PMID:28541286 GO_REF:0000024 GO_REF:0000107 MGI:5920379 NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase involved_in ISO (PMID:20650889) RGD PMID:20650889 NCBI chr16:66,105,233...66,137,444
Ensembl chr16:66,105,181...66,136,138 		JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,855,104...3,859,148
Ensembl chr20:3,856,006...3,873,240 		JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B involved_in ISS
ISO		 GO_REF:0000024
(MGI:6274951|PMID:27789271)		 UniProt
RGD		 PMID:27789271 GO_REF:0000024 MGI:6274951 NCBI chr20:3,870,765...3,873,221 JBrowse link
G Igf2r insulin-like growth factor 2 receptor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:47,979,109...48,067,501
Ensembl chr 1:47,979,109...48,067,501 		JBrowse link
G Lrp1 LDL receptor related protein 1 involved_in ISO (MGI:5701557|PMID:26370502) RGD PMID:26370502 MGI:5701557 NCBI chr 7:63,380,325...63,461,029
Ensembl chr 7:63,380,356...63,460,910 		JBrowse link
G Lyset lysosomal enzyme trafficking factor involved_in ISO (PMID:36074821), (PMID:36074822) RGD PMID:36074821 PMID:36074822 NCBI chr 6:121,884,554...121,886,710
Ensembl chr 6:121,884,643...121,886,275 		JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in ISS
ISO		 GO_REF:0000024
(MGI:5701557|PMID:26370502)		 UniProt
RGD		 PMID:26370502 GO_REF:0000024 MGI:5701557 NCBI chr 4:155,501,080...155,510,219
Ensembl chr 4:155,500,921...155,510,216 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO (PMID:18544533) RGD PMID:18544533 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951 		JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 involved_in ISO (PMID:17452316) RGD PMID:17452316 NCBI chr 5:121,211,278...121,233,688
Ensembl chr 5:121,211,278...121,233,688 		JBrowse link
G Psap prosaposin involved_in ISS
ISO		 GO_REF:0000024
(PMID:26370502), (PMID:28541286), (PMID:28835281)		 UniProt
RGD		 PMID:26370502 PMID:28541286 PMID:28835281 GO_REF:0000024 NCBI chr20:28,214,229...28,240,501
Ensembl chr20:28,214,271...28,240,498 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO (MGI:5467668|PMID:23197834) RGD PMID:23197834 MGI:5467668 NCBI chr10:63,083,319...63,087,538
Ensembl chr10:63,083,338...63,087,538 		JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 acts_upstream_of_or_within ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324 		JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:5588048|PMID:25066864)
PMID:21873635		 RGD PMID:25066864 PMID:21873635 MGI:5588048, RGD:13792537 NCBI chr 4:41,328,125...41,347,315
Ensembl chr 4:41,327,994...41,345,619 		JBrowse link
G Vps51 VPS51 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:25799061)
PMID:21873635		 RGD PMID:25799061 PMID:21873635 RGD:13792537 NCBI chr 1:203,360,434...203,370,295
NCBI chr 1:203,369,158...203,370,408
Ensembl chr 1:203,360,440...203,370,430 		JBrowse link
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:25799061)
PMID:21873635		 RGD PMID:25799061 PMID:21873635 RGD:13792537 NCBI chr20:4,920,715...4,931,685
Ensembl chr20:4,860,843...4,931,665 		JBrowse link
G Vps53 VPS53 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:25799061) RGD PMID:25799061 NCBI chr10:60,919,820...61,038,674
Ensembl chr10:60,919,820...61,038,676 		JBrowse link
G Vps54 VPS54 subunit of GARP complex acts_upstream_of_or_within ISO (PMID:25799061) RGD PMID:25799061 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857 		JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:18799622)		 UniProt
RGD		 PMID:18799622 GO_REF:0000024 NCBI chr19:15,866,811...15,877,123
Ensembl chr19:15,866,928...15,886,663 		JBrowse link
G Atg14 autophagy related 14 acts_upstream_of_or_within ISO UniProtKB:O95295 (PMID:22797916) RGD PMID:22797916 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Becn2 beclin 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:23954414)
(MGI:5528919|PMID:23954414)		 RGD PMID:23954414 MGI:5528919 NCBI chr13:87,843,528...87,892,343
Ensembl chr13:87,844,531...87,845,787 		JBrowse link
G Bin1 bridging integrator 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:27179792)		 Ensembl
RGD		 PMID:27179792 GO_REF:0000107 NCBI chr18:24,009,731...24,067,267
Ensembl chr18:24,009,653...24,067,263 		JBrowse link
G Cdx2 caudal type homeo box 2 acts_upstream_of_or_within ISO (MGI:4457791|PMID:20551175) RGD PMID:20551175 MGI:4457791 NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142 		JBrowse link
G Chmp3 charged multivesicular body protein 3 IMP RGD PMID:18076377 RGD:4892661 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp5 charged multivesicular body protein 5 acts_upstream_of_or_within ISO MGI:3626293 (MGI:3622513|PMID:16567502) RGD PMID:16567502 MGI:3622513 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Clec16a C-type lectin domain containing 16A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:4,927,804...5,123,749
Ensembl chr10:4,928,030...5,123,578 		JBrowse link
G Dennd3 DENN domain containing 3 involved_in ISO (MGI:5448516|PMID:21718402) RGD PMID:21718402 MGI:5448516 NCBI chr 7:105,415,870...105,473,583
Ensembl chr 7:105,415,677...105,473,592 		JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in ISO (PMID:24790097) RGD PMID:24790097 NCBI chr11:64,814,926...64,824,538
Ensembl chr11:64,814,926...64,824,538 		JBrowse link
G Epg5 ectopic P-granules 5 autophagy tethering factor involved_in ISO (PMID:29130391) RGD PMID:29130391 NCBI chr18:71,403,990...71,502,079
Ensembl chr18:71,404,010...71,501,502 		JBrowse link
G Fhip1b FHF complex subunit HOOK interacting protein 1B involved_in IBA
ISS
ISO		 PMID:21873635
GO_REF:0000024
(PMID:18799622)		 UniProt
RGD		 PMID:18799622 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:159,718,679...159,748,449
Ensembl chr 1:159,726,004...159,748,408 		JBrowse link
G Gprasp1 G protein-coupled receptor associated sorting protein 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:23954414)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:23954414 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:98,765,581...98,772,685
Ensembl chr  X:98,709,841...98,772,851 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate IMP RGD PMID:19808888 RGD:4892648 NCBI chr10:105,739,617...105,757,838
Ensembl chr10:105,739,296...105,757,835 		JBrowse link
G Hook1 hook microtubule-tethering protein 1 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:110,824,501...110,887,791
Ensembl chr 5:110,824,501...110,887,787 		JBrowse link
G Hook2 hook microtubule-tethering protein 2 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:23,151,869...23,170,139
Ensembl chr19:23,151,870...23,164,181 		JBrowse link
G Hook3 hook microtubule-tethering protein 3 involved_in ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:65,954,293...66,058,812
Ensembl chr16:65,954,350...66,061,338 		JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:17,766,597...17,948,517
Ensembl chr17:17,766,597...17,943,615 		JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:6364606 (MGI:6510385|PMID:33357458)
GO_REF:0000107		 RGD
Ensembl		 PMID:33357458 GO_REF:0000107 MGI:6510385 NCBI chr 1:232,024,351...232,167,329
Ensembl chr 1:232,024,356...232,057,633 		JBrowse link
G Mgrn1 mahogunin ring finger 1 involved_in IBA
ISO		 PMID:21873635
(PMID:17229889)		 RGD PMID:17229889 PMID:21873635 RGD:13792537 NCBI chr10:10,638,881...10,688,332
Ensembl chr10:10,638,880...10,688,315 		JBrowse link
G Mtm1 myotubularin 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:14722070)		 UniProt
RGD		 PMID:14722070 GO_REF:0000024 NCBI chr 6:488,691...506,964
Ensembl chr 6:488,969...506,860 		JBrowse link
G Pcdhga3 protocadherin gamma subfamily A, 3 acts_upstream_of_or_within ISO (MGI:5317350|PMID:21917590) RGD PMID:21917590 MGI:5317350 NCBI chr18:29,499,148...29,667,865
Ensembl chr18:29,493,954...29,667,868 		JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:90,908,304...90,915,862
Ensembl chr 1:90,904,742...90,915,820 		JBrowse link
G Plekhf2 pleckstrin homology and FYVE domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:24,091,077...24,106,758
Ensembl chr 5:24,090,688...24,106,601 		JBrowse link
G Pxk PX domain containing serine/threonine kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:16,759,857...16,828,452
Ensembl chr15:16,759,862...16,828,444 		JBrowse link
G Rab12 RAB12, member RAS oncogene family involved_in ISS
ISO		 GO_REF:0000024
(MGI:5448516|PMID:21718402)		 UniProt
RGD		 PMID:21718402 GO_REF:0000024 MGI:5448516 NCBI chr 9:106,480,301...106,506,895
Ensembl chr 9:106,480,301...106,506,910 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IBA
ISO		 PMID:21873635
(PMID:18272684)		 RGD PMID:18272684 PMID:21873635 RGD:13792537 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:43,121,168...43,147,581
Ensembl chr13:43,121,226...43,147,581 		JBrowse link
G Rhob ras homolog family member B involved_in ISS
ISO		 GO_REF:0000024
(PMID:10508588)		 UniProt
RGD		 PMID:10508588 GO_REF:0000024 NCBI chr 6:31,363,752...31,365,926
Ensembl chr 6:31,363,548...31,366,108 		JBrowse link
G Rilp Rab interacting lysosomal protein involved_in ISO (PMID:18272684) RGD PMID:18272684 NCBI chr10:60,355,276...60,358,434
Ensembl chr10:60,355,278...60,358,781 		JBrowse link
G Scyl2 SCY1 like pseudokinase 2 involved_in ISO (PMID:19643732) RGD PMID:19643732 NCBI chr 7:24,064,404...24,117,338
Ensembl chr 7:24,064,404...24,117,305 		JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within
involved_in		 ISO
IBA		 UniProtKB:Q6ZNE5 (PMID:22797916)
PMID:21873635		 RGD PMID:22797916 PMID:21873635 RGD:13792537 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231 		JBrowse link
G Snx16 sorting nexin 16 involved_in ISO
IEA
IBA
ISS		 (PMID:12813048)
GO_REF:0000107
PMID:21873635
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:12813048 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:91,335,896...91,357,622
Ensembl chr 2:91,336,092...91,357,619 		JBrowse link
G Snx27 sorting nexin 27 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:182,135,904...182,218,906
Ensembl chr 2:182,135,905...182,218,906 		JBrowse link
G Sort1 sortilin 1 involved_in ISO (PMID:11331584) RGD PMID:11331584 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354 		JBrowse link
G Stx7 syntaxin 7 IDA RGD PMID:15133481 RGD:4892614 NCBI chr 1:21,197,075...21,237,320
Ensembl chr 1:21,197,075...21,237,279 		JBrowse link
G Stx8 syntaxin 8 IDA RGD PMID:15133481 RGD:4892614 NCBI chr10:52,655,643...52,900,048
Ensembl chr10:52,654,990...52,894,993 		JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 involved_in ISO (PMID:25266290) RGD PMID:25266290 NCBI chr 9:45,320,930...45,371,329
Ensembl chr 9:45,320,930...45,371,311 		JBrowse link
G Trak1 trafficking kinesin protein 1 involved_in IBA
ISO		 PMID:21873635
(PMID:18675823)		 RGD PMID:18675823 PMID:21873635 RGD:13792537 NCBI chr 8:120,984,445...121,139,357
Ensembl chr 8:120,984,431...121,139,367 		JBrowse link
G Trak2 trafficking kinesin protein 2 IDA RGD PMID:17062640 RGD:13208835 NCBI chr 9:60,348,531...60,414,036
Ensembl chr 9:60,350,012...60,413,996 		JBrowse link
G Tsg101 tumor susceptibility 101 involved_in IMP
IBA		 PMID:21873635 RGD
GO_Central		 PMID:19808888 PMID:21873635 RGD:4892648, RGD:13792537 NCBI chr 1:97,412,689...97,442,589
Ensembl chr 1:97,410,848...97,442,554 		JBrowse link
G Uevld UEV and lactate/malate dehyrogenase domains involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:97,454,188...97,486,004
Ensembl chr 1:97,453,946...97,486,000 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in IDA
ISO		 PMID:15133481
(PMID:10888671)		 RGD PMID:10888671 PMID:15133481 PMID:15133481 RGD:4892614, RGD:4892614 NCBI chr12:16,728,477...16,764,261
Ensembl chr12:16,728,524...16,764,097 		JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog involved_in
NOT|involved_in		 ISO (PMID:19109425)
(PMID:25783203)		 RGD PMID:19109425 PMID:25783203 NCBI chr 6:106,888,284...106,913,139
Ensembl chr 6:106,888,284...106,913,117 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 8:44,683,768...44,698,572
Ensembl chr 8:44,684,127...44,698,568 		JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:117,622,534...117,644,041
Ensembl chr 3:117,622,542...117,646,441 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in ISO
IBA		 (PMID:25783203)
PMID:21873635		 RGD PMID:25783203 PMID:21873635 RGD:13792537 NCBI chr 3:106,279,444...106,290,298
Ensembl chr 3:106,279,425...106,291,964 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in IEA
ISO		 GO_REF:0000107
(PMID:25783203)		 Ensembl
RGD		 PMID:25783203 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393 		JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT|involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:134,223,967...134,247,232
Ensembl chr 1:134,223,949...134,246,970 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:25266290), (PMID:25783203) RGD PMID:25266290 PMID:25783203 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO (PMID:25783203) RGD PMID:25783203 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791 		JBrowse link
endosome to lysosome transport of low-density lipoprotein particle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor like GTPase 8B involved_in ISS
ISO		 GO_REF:0000024
(PMID:21802320)		 UniProt
RGD		 PMID:21802320 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596 		JBrowse link
G Tpcn2 two pore segment channel 2 involved_in ISO (MGI:5691857|PMID:25144390) RGD PMID:25144390 MGI:5691857 NCBI chr 1:200,416,538...200,446,252
Ensembl chr 1:200,416,540...200,446,236 		JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lyst lysosomal trafficking regulator involved_in ISO (PMID:9606205) RGD PMID:9606205 NCBI chr17:86,241,384...86,443,501
Ensembl chr17:86,241,384...86,443,480 		JBrowse link
G Mvb12a multivesicular body subunit 12A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,252,227...18,257,111
Ensembl chr16:18,252,222...18,257,539 		JBrowse link
G Ubxn6 UBX domain protein 6 involved_in ISO (PMID:21822278) RGD PMID:21822278 NCBI chr 9:900,883...906,047
Ensembl chr 9:900,884...906,124 		JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO		 GO_REF:0000024
(PMID:21822278)		 UniProt
RGD		 PMID:21822278 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571 		JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B involved_in ISO (PMID:15024011) RGD PMID:15024011 NCBI chr13:22,907,105...22,932,200
Ensembl chr13:22,907,109...22,932,229 		JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 involved_in IBA
ISO		 PMID:21873635
(PMID:22284051)		 RGD PMID:22284051 PMID:21873635 RGD:13792537 NCBI chr10:57,312,246...57,383,964
Ensembl chr10:57,312,246...57,383,964 		JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in ISO (PMID:23632890) RGD PMID:23632890 NCBI chr19:37,744,666...37,831,131
Ensembl chr19:37,744,633...37,829,167 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in IBA
ISO
ISS		 PMID:21873635
(PMID:11139587)
GO_REF:0000024		 RGD
UniProt		 PMID:11139587 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026 		JBrowse link
G Asb14 ankyrin repeat and SOCS box-containing 14 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:2,095,567...2,123,259
Ensembl chr16:2,095,644...2,115,135 		JBrowse link
G Ccdc91 coiled-coil domain containing 91 involved_in IBA
ISO
ISS		 PMID:21873635
(PMID:17596511)
GO_REF:0000024		 RGD
UniProt		 PMID:17596511 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:180,402,327...180,574,364
Ensembl chr 4:180,402,376...180,574,364 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:18817525) RGD PMID:18817525 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Ehd3 EH-domain containing 3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:19139087)		 Ensembl
RGD		 PMID:19139087 GO_REF:0000107 NCBI chr 6:21,640,861...21,665,601
Ensembl chr 6:21,639,290...21,665,236 		JBrowse link
G Gak cyclin G associated kinase involved_in IEA
ISO		 GO_REF:0000107
(PMID:16155256)		 Ensembl
RGD		 PMID:16155256 GO_REF:0000107 NCBI chr14:1,089,853...1,164,098
Ensembl chr14:1,089,866...1,216,398 		JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 involved_in ISO
IEA		 (PMID:23632890)
GO_REF:0000107		 RGD
Ensembl		 PMID:23632890 GO_REF:0000107 NCBI chr16:76,355,982...76,380,700
Ensembl chr16:76,355,984...76,381,883 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:6478861|PMID:24638062) RGD PMID:24638062 MGI:6478861 NCBI chr 5:143,087,759...143,109,807
Ensembl chr 5:143,087,759...143,109,807 		JBrowse link
G Rbsn rabenosyn, RAB effector involved_in ISO (PMID:19139087) RGD PMID:19139087 NCBI chr 4:124,682,228...124,712,578
Ensembl chr 4:124,683,969...124,712,578 		JBrowse link
G Sort1 sortilin 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16787399)		 UniProt
RGD		 PMID:16787399 GO_REF:0000024 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354 		JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ADP-ribosylation factor like GTPase 8B involved_in ISO
ISS		 (MGI:6508507|PMID:25637027)
(PMID:28325809)
GO_REF:0000024		 RGD
UniProt		 PMID:25637027 PMID:28325809 GO_REF:0000024 MGI:6508507 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596 		JBrowse link
G Chmp1a charged multivesicular body protein 1A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr19:51,238,153...51,246,433
Ensembl chr19:51,238,160...51,246,436 		JBrowse link
G Chmp1b charged multivesicular body protein 1B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr18:60,740,349...60,742,879 JBrowse link
G Chmp2a charged multivesicular body protein 2A involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 1:73,660,045...73,662,894
Ensembl chr 1:73,660,046...73,662,452 		JBrowse link
G Chmp2b charged multivesicular body protein 2B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr11:3,338,007...3,364,357
Ensembl chr11:3,337,494...3,385,181 		JBrowse link
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
G Chmp4b charged multivesicular body protein 4B involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 3:143,170,822...143,211,376
Ensembl chr 3:143,170,902...143,210,844 		JBrowse link
G Chmp4c charged multivesicular body protein 4C involved_in IEA
ISO		 GO_REF:0000107
(PMID:17984323)		 Ensembl
RGD		 PMID:17984323 GO_REF:0000107 NCBI chr 2:91,391,729...91,428,652
Ensembl chr 2:91,388,530...91,428,668 		JBrowse link
G Chmp5 charged multivesicular body protein 5 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr 5:56,081,385...56,098,529
Ensembl chr 5:56,081,343...56,098,529 		JBrowse link
G Chmp6 charged multivesicular body protein 6 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr10:105,191,972...105,197,642
Ensembl chr10:105,191,950...105,197,640 		JBrowse link
G Chmp7 charged multivesicular body protein 7 involved_in ISO (PMID:17984323) RGD PMID:17984323 NCBI chr15:44,790,983...44,806,216
Ensembl chr15:44,790,996...44,806,216 		JBrowse link
G Plekhm1 pleckstrin homology and RUN domain containing M1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:28325809)		 UniProt
RGD		 PMID:28325809 GO_REF:0000024 NCBI chr10:88,313,837...88,366,182
Ensembl chr10:88,314,651...88,362,412 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(MGI:5779453|PMID:26989253)		 Ensembl
UniProt
RGD		 PMID:26989253 GO_REF:0000024 GO_REF:0000107 MGI:5779453 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Snapin SNAP-associated protein acts_upstream_of_or_within ISO MGI:3608768 (MGI:4879078|PMID:20920792) RGD PMID:20920792 MGI:4879078 NCBI chr 2:175,971,575...175,974,164
Ensembl chr 2:175,971,257...175,974,231 		JBrowse link
G Vps39 VPS39 subunit of HOPS complex involved_in ISO (PMID:23167963) RGD PMID:23167963 NCBI chr 3:107,266,846...107,304,884
Ensembl chr 3:107,267,310...107,304,975 		JBrowse link
G Vps41 VPS41 subunit of HOPS complex involved_in ISO (PMID:23167963) RGD PMID:23167963 NCBI chr17:46,063,124...46,227,582
Ensembl chr17:46,063,124...46,227,791 		JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:24446486) RGD PMID:24446486 NCBI chr 5:150,530,523...150,542,635
Ensembl chr 5:150,530,523...150,542,635 		JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase involved_in ISO (PMID:24446486) RGD PMID:24446486 NCBI chr 1:48,688,651...49,882,520
Ensembl chr 1:48,690,556...49,882,555 		JBrowse link
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:26618722) RGD PMID:26618722 NCBI chr19:21,765,771...21,801,620
Ensembl chr19:21,765,749...21,801,618 		JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 involved_in ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:103,576,453...103,622,566
Ensembl chr 4:103,576,515...103,623,959 		JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta involved_in IBA
ISO		 PMID:21873635
(PMID:19938078), (PMID:25505245)		 RGD PMID:19938078 PMID:25505245 PMID:21873635 RGD:13792537 NCBI chr 7:22,800,502...22,866,336
Ensembl chr 7:22,800,485...22,866,933 		JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps35 VPS35 retromer complex component involved_in ISO (PMID:23563491) RGD PMID:23563491 NCBI chr19:21,765,771...21,801,620
Ensembl chr19:21,765,749...21,801,618 		JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO
IBA		 (MGI:5819335|PMID:24217640)
PMID:21873635		 RGD PMID:24217640 PMID:21873635 MGI:5819335, RGD:13792537 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643 		JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 involved_in ISO
IBA		 (MGI:5819335|PMID:24217640)
PMID:21873635		 RGD PMID:24217640 PMID:21873635 MGI:5819335, RGD:13792537 NCBI chr 7:109,572,838...109,698,516
Ensembl chr 7:109,574,459...109,697,227 		JBrowse link
G Cacng3 calcium voltage-gated channel auxiliary subunit gamma 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:177,201,990...177,296,473
Ensembl chr 1:177,201,288...177,297,024 		JBrowse link
G Cacng4 calcium voltage-gated channel auxiliary subunit gamma 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:92,686,100...92,745,601
Ensembl chr10:92,683,761...92,746,126 		JBrowse link
G Cacng5 calcium voltage-gated channel auxiliary subunit gamma 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:92,827,441...92,869,632
Ensembl chr10:92,829,196...92,869,614 		JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,800,820...65,831,165
Ensembl chr 1:65,800,355...65,831,006 		JBrowse link
G Cacng8 calcium voltage-gated channel auxiliary subunit gamma 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,755,334...65,775,567
Ensembl chr 1:65,755,334...65,779,089 		JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 IMP RGD PMID:21421027 RGD:9684860 NCBI chr10:43,997,983...44,014,543
Ensembl chr10:43,997,986...44,014,434 		JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 acts_upstream_of_or_within ISO MGI:1856989 (MGI:2679144|PMID:14557411) RGD PMID:14557411 MGI:2679144 NCBI chr 2:25,600,069...25,800,937
Ensembl chr 2:25,600,040...25,800,935 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:11139587) RGD PMID:11139587 NCBI chr12:17,049,766...17,055,954
Ensembl chr12:17,049,777...17,058,026 		JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16885419)		 UniProt
RGD		 PMID:16885419 GO_REF:0000024 NCBI chr20:26,247,394...26,293,613
Ensembl chr20:26,247,404...26,293,613 		JBrowse link
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 involved_in ISO UniProtKB:P46934 (PMID:17116753) RGD PMID:17116753 NCBI chr10:100,825,426...100,844,462
Ensembl chr10:100,825,426...100,844,462 		JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate involved_in ISO
IEA		 (PMID:18767904)
GO_REF:0000107		 RGD
Ensembl		 PMID:18767904 GO_REF:0000107 NCBI chr10:105,739,617...105,757,838
Ensembl chr10:105,739,296...105,757,835 		JBrowse link
G Laptm5 lysosomal protein transmembrane 5 involved_in ISO (MGI:3803048|PMID:18619870) RGD PMID:18619870 MGI:3803048 NCBI chr 5:143,087,759...143,109,807
Ensembl chr 5:143,087,759...143,109,807 		JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor IMP chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chr 6:5,661,871...5,728,109
Ensembl chr 6:5,661,871...5,724,521 		JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:155,501,080...155,510,219
Ensembl chr 4:155,500,921...155,510,216 		JBrowse link
G M6pr-ps1 mannose-6-phosphate receptor, cation dependent, pseudogene 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:82,129,292...82,130,780
Ensembl chr  X:82,129,322...82,130,158 		JBrowse link
G Ncoa4 nuclear receptor coactivator 4 acts_upstream_of_or_within ISO (PMID:25327288) RGD PMID:25327288 NCBI chr16:7,389,222...7,409,564
Ensembl chr16:7,366,542...7,409,641
Ensembl chr16:7,366,542...7,409,641 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (MGI:5921629|PMID:28675177) RGD PMID:28675177 MGI:5921629 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in ISO UniProtKB:Q9NZ52 (PMID:17116753) RGD PMID:17116753 NCBI chr 8:73,384,095...73,468,951
Ensembl chr 8:73,383,695...73,468,951 		JBrowse link
G Pxk PX domain containing serine/threonine kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:16,759,857...16,828,452
Ensembl chr15:16,759,862...16,828,444 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Scarb2 scavenger receptor class B, member 2 involved_in ISO
IBA		 (MGI:3773765|PMID:18022370)
(PMID:18022370)
PMID:21873635		 RGD PMID:18022370 PMID:21873635 MGI:3773765, RGD:13792537 NCBI chr14:15,558,271...15,609,813
Ensembl chr14:15,558,236...15,609,813 		JBrowse link
G Snx16 sorting nexin 16 involved_in IBA
IEA
ISO
ISS		 PMID:21873635
GO_REF:0000107
(PMID:12813048)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:12813048 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 2:91,335,896...91,357,622
Ensembl chr 2:91,336,092...91,357,619 		JBrowse link
G Sorl1 sortilin related receptor 1 involved_in ISO
IBA		 (PMID:24523320)
PMID:21873635		 RGD PMID:24523320 PMID:21873635 RGD:13792537 NCBI chr 8:42,341,704...42,504,435
Ensembl chr 8:42,341,704...42,504,513 		JBrowse link
G Sort1 sortilin 1 acts_upstream_of_or_within ISO MGI:4397584 (MGI:4368056|PMID:19732768) RGD PMID:19732768 MGI:4368056 NCBI chr 2:195,924,033...196,002,354
Ensembl chr 2:195,924,099...196,002,354 		JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A involved_in ISO
IEA		 (PMID:16973552)
GO_REF:0000107		 RGD
Ensembl		 PMID:16973552 GO_REF:0000107 NCBI chr19:34,934,999...34,948,267
Ensembl chr19:34,934,961...34,948,887 		JBrowse link
G Vps53 VPS53 subunit of GARP complex involved_in ISO (MGI:6103674|PMID:28658628) RGD PMID:28658628 MGI:6103674 NCBI chr10:60,919,820...61,038,674
Ensembl chr10:60,919,820...61,038,676 		JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in ISO
IEA		 MGI:1857091 (MGI:6103674|PMID:28658628), (MGI:6430941|PMID:32345721)
GO_REF:0000107		 RGD
Ensembl		 PMID:28658628 PMID:32345721 GO_REF:0000107 MGI:6103674 MGI:6430941 NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857 		JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 involved_in IBA
ISO		 PMID:21873635
(PMID:11546807)		 RGD PMID:11546807 PMID:21873635 RGD:13792537 NCBI chr 2:23,713,018...23,757,576
Ensembl chr 2:23,713,766...23,756,990 		JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin involved_in IEA
ISO		 GO_REF:0000107
(PMID:9228033)		 Ensembl
RGD		 PMID:9228033 GO_REF:0000107 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315 		JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:164,044,226...164,046,344
Ensembl chr 2:164,044,261...164,046,336 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in ISO
ISS
IBA		 (PMID:11559757), (PMID:26212789), (PMID:36586411)
GO_REF:0000024
PMID:21873635		 RGD
UniProt		 PMID:11559757 PMID:26212789 PMID:36586411 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:41,183,397...41,187,260
Ensembl chr 8:41,183,264...41,187,259 		JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 acts_upstream_of_or_within
involved_in		 IMP
IBA
ISO
ISS
IGI		 PMID:18644871
PMID:21873635
(MGI:5805578|PMID:27628032)
GO_REF:0000024
(PMID:27628032)		 RGD
UniProt		 PMID:27628032 PMID:18644871 PMID:21873635 PMID:18644871 GO_REF:0000024 MGI:5805578, RGD:10412301, RGD:13792537, RGD:10412301 NCBI chr  X:117,173,097...117,222,090
Ensembl chr  X:117,057,606...117,260,522 		JBrowse link
zinc ion import into lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc30a2 solute carrier family 30 member 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25808614)		 Ensembl
RGD		 PMID:25808614 GO_REF:0000107 NCBI chr 5:146,559,733...146,571,957
Ensembl chr 5:146,559,733...146,571,956 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    localization 5598
      cellular localization 3610
        intracellular transport 1636
          vacuolar transport 165
            lysosomal transport 127
              Golgi to lysosome transport 12
              L-arginine transmembrane transport from lysosomal lumen to cytosol 0
              endosome to lysosome transport + 65
              late endosome to lysosome transport + 18
              lysosome to ER cholesterol transport 0
              mitochondrion to lysosome transport 3
              protein targeting to lysosome + 27
              purine nucleotide import into lysosome 0
              transmembrane L-cystine transport from lysosomal lumen to cytosol 0
              transmembrane L-histidine transport from lysosomal lumen to cytosol 0
              transmembrane L-lysine transport from lysosomal lumen to cytosol 0
              zinc ion import into lysosome 1
Path 2
Term Annotations click to browse term
  biological_process 19746
    cellular process 18159
      cellular localization 3610
        establishment of localization in cell 2302
          intracellular transport 1636
            vacuolar transport 165
              lysosomal transport 127
                Golgi to lysosome transport 12
                L-arginine transmembrane transport from lysosomal lumen to cytosol 0
                endosome to lysosome transport + 65
                late endosome to lysosome transport + 18
                lysosome to ER cholesterol transport 0
                mitochondrion to lysosome transport 3
                protein targeting to lysosome + 27
                purine nucleotide import into lysosome 0
                transmembrane L-cystine transport from lysosomal lumen to cytosol 0
                transmembrane L-histidine transport from lysosomal lumen to cytosol 0
                transmembrane L-lysine transport from lysosomal lumen to cytosol 0
                zinc ion import into lysosome 1
paths to the root